BAC Information

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BAC

Clone NameB6Ng01-008A12
Chromosome8 (Build37)
Map Location 114,964,426 - 115,095,993
singlet/doubletdoublet
Overlap geneCntnap4
Upstream geneWdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008A12.bB6Ng01-008A12.g
ACCDH844427DH844428
length1,1141,181
definitionDH844427|Mus musculus domesticus DNA, BAC clone: B6Ng01-008A12, 5' end.DH844428|Mus musculus domesticus DNA, BAC clone: B6Ng01-008A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,094,865 - 115,095,993)(114,964,426 - 114,965,621)
sequence
gaattccaagtttaatgtttaagtgttcttgttcacttcagttctaggct
ctccacatttatccaatgacttcatagagaaatcgaaccccgatggatac
agatccaaggttgaaacggcacccgtgggaggcccaggcagagctaagca
gacatgagcactggcttctcctcaaatctcagctgctcactttttccctg
gctgagatgaacgaggaagggaagccttttaatatggatcttccggtgac
actctgtaccacattgcaagcgagcaaacaaacatccgcagctcacagcc
caattattcatattaataaactgcaaaaagatgtgcaggcaaggcatagg
gaagacaaactgggttaggccagcatgaagctctgcccaactcaagggaa
gagcttgtgtgcttcgcatcgcaacagtgacctctagtgctccctctctg
atgaacccctgcagctgcagaaggaattacacctttgccacagaacttca
actgagcgggtaggtgggttcaggtctgctgtgtatcatccttgtttgtt
tatttgctacagcgcttgtcaaggccatcacccacaggaccctctaagat
tttggctaggtgaaactatacatattttactgatttaatgggattcccac
acattcgatttgaaattgaatgggaagcacagtccagcctaggagtgaag
ttctctcctttgcctttgcagagtggcaggtaaattctgacatttaatga
gctcctgaaaaatcatcagtgggtggacacgagctcgtggcagtgagttc
cctgtgcctttccctcgtgaggactctacagttaaggcaaaagagggtct
atggcaaagagagttaccaatgtcttgtctctcaaacctaaagctgtcag
taaaggcaggtcccatccattcctgagcaggactataacccttttcttgt
aaagcaaagaagaatagaaagttgtgtgttgcttggctgttttatcatac
ataaagaggaaattcttctatctaaagaatctaacaaatataacttttaa
acttttcaaattcatggccaagctgacgaagagttggggcagggtatttt
gatgatttaaatta
gaattctcagtttggtaatgtggagttttgaaggttaagagtttagcctg
acttcaggggtccatggtccttcagtcaaggaggtgattggagaccagta
acgcttatggcaaactgtgcttccgatgtttcgacatttccccaatcaca
ccattttggtttttttaaaatatgggtgacagtaatttcccttacctgtg
gttttatttgcatagcttcagttacccaaagcaaatcattgtctagaaat
actaaacaacaacagcaacaacaacaacaacaacaacaacaacaaaaaac
ctctccagaaataaatgttcataatttaaaaatgacctttattatagcac
tctgttattatgaccatattctattatgaggtaatattattgctttctta
tacccaatatatggtcacaccttatcacaggtaagaatgaagagaaaata
ctggaatgtataacattagtgtttgctatggtttcgggcatatcctgggg
aagcttaggacattcctcttataataaggggaataactgtatagtgtttc
tcattattttggttttataaaccataagtcaataacacatgtgacattta
actctcaatatacattagttacttcaagagaataattttgaagagatgac
taaagatcactcatatagcgacaggagaatcatctctaaatatctactct
atgaacaagtagaaaagcacattattccaatggagtccagaaagacctca
agagatggtgtctctctaaatccagaagcagacaatagtggcttagggta
gtgtcaaaagtggccagtgttcgacagggtgacacaaacccgattttagg
gctctgtctctgtacaagccagaaataactggcaggtttaacagacagaa
gcttgcaattcgtatcaagccacacgagtttgcacagtggctaaagacag
tgcacaaatatgcatctccctttagaatttacagttgcttcacgaagatg
tactatttcaatatgataataagtgacacagagcatcccatgtcctaatt
tccaagctttaaatcggacttattgtcttcactgacgcaatgagagagtt
ggctcttgaaatgcttcaaagaaatttaaatccgagcggacagctccaca
tggtaagggagtggtgatatacctttgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_115094865_115095993
seq2: B6Ng01-008A12.b_46_1159 (reverse)

seq1  TAATTTAAATATCATCCAAAATACCCTGGCCCAACTCTTTCGTCAGCTTG  50
      ||||||||  ||||| |||||||||||| |||||||| ||||||||||||
seq2  TAATTTAA--ATCAT-CAAAATACCCTGCCCCAACTC-TTCGTCAGCTTG  46

seq1  CCATTGGAAATAGGAAAAGTTTTAAAAGTTTATATTTGGTTTAGATTCTT  100
       |  ||  |||  |||||| |||||||| |||||||||  ||||||||||
seq2  GCCATG--AATTTGAAAAG-TTTAAAAG-TTATATTTG--TTAGATTCTT  90

seq1  TAGATAGAAGAATTTCCTCTTTTTATGTATGATAAAAACAGCCAAGCAAA  150
      |||||||||||||||||||  |||||||||||| ||||||||||||| ||
seq2  TAGATAGAAGAATTTCCTC--TTTATGTATGAT-AAAACAGCCAAGC-AA  136

seq1  CACACAACTTTCTATTTCTTTCTCTGCTTTACAAG-AAAGGGTTATAAGT  199
      ||||||||||||||||   |||| ||||||||||| |||||||||| |||
seq2  CACACAACTTTCTATT--CTTCTTTGCTTTACAAGAAAAGGGTTAT-AGT  183

seq1  CCTGCTCAGGAATGGATGGGACCTGCC-TTACTGACAGCTTTAGGTTTGA  248
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTGCTCAGGAATGGATGGGACCTGCCTTTACTGACAGCTTTAGGTTTGA  233

seq1  GAGACAAGACATTGGTAACTCTCTTTGCCATAGACCCTCTTTTGCCTTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGACATTGGTAACTCTCTTTGCCATAGACCCTCTTTTGCCTTAA  283

seq1  CTGTAGAGTCCTCACGAGGGAAAGGCACAGGGAACTCACTGCCACGAGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGTCCTCACGAGGGAAAGGCACAGGGAACTCACTGCCACGAGCT  333

seq1  CGTGTCCACCCACTGATGATTTTTCAGGAGCTCATTTAATGTCAGAATTT  398
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CGTGTCCACCCACTGATGATTTTTCAGGAGCTCATTAAATGTCAGAATTT  383

seq1  ACCTGCCACTCTGCAAAGGCAAAGGAGAGAACTTCACTCCTAGGCTGGAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCACTCTGCAAAGGCAAAGGAGAGAACTTCACTCCTAGGCTGGAC  433

seq1  TGTGCTTCCCATTCAATTTCAAATCGAATGTGTGGGAATCCCATTAAATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCCCATTCAATTTCAAATCGAATGTGTGGGAATCCCATTAAATC  483

seq1  AGTAAAATATGTATAGTTTCACCTAGCCAAAATCTTAGAGGGTCCTGTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATATGTATAGTTTCACCTAGCCAAAATCTTAGAGGGTCCTGTGG  533

seq1  GTGATGGCCTTGACAAGCGCTGTAGCAAATAAACAAACAAGGATGATACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCCTTGACAAGCGCTGTAGCAAATAAACAAACAAGGATGATACA  583

seq1  CAGCAGACCTGAACCCACCTACCCGCTCAGTTGAAGTTCTGTGGCAAAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGACCTGAACCCACCTACCCGCTCAGTTGAAGTTCTGTGGCAAAGG  633

seq1  TGTAATTCCTTCTGCAGCTGCAGGGGTTCATCAGAGAGGGAGCACTAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCCTTCTGCAGCTGCAGGGGTTCATCAGAGAGGGAGCACTAGAG  683

seq1  GTCACTGTTGCGATGCGAAGCACACAAGCTCTTCCCTTGAGTTGGGCAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTTGCGATGCGAAGCACACAAGCTCTTCCCTTGAGTTGGGCAGA  733

seq1  GCTTCATGCTGGCCTAACCCAGTTTGTCTTCCCTATGCCTTGCCTGCACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATGCTGGCCTAACCCAGTTTGTCTTCCCTATGCCTTGCCTGCACA  783

seq1  TCTTTTTGCAGTTTATTAATATGAATAATTGGGCTGTGAGCTGCGGATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGCAGTTTATTAATATGAATAATTGGGCTGTGAGCTGCGGATGT  833

seq1  TTGTTTGCTCGCTTGCAATGTGGTACAGAGTGTCACCGGAAGATCCATAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTCGCTTGCAATGTGGTACAGAGTGTCACCGGAAGATCCATAT  883

seq1  TAAAAGGCTTCCCTTCCTCGTTCATCTCAGCCAGGGAAAAAGTGAGCAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCTTCCCTTCCTCGTTCATCTCAGCCAGGGAAAAAGTGAGCAGC  933

seq1  TGAGATTTGAGGAGAAGCCAGTGCTCATGTCTGCTTAGCTCTGCCTGGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTGAGGAGAAGCCAGTGCTCATGTCTGCTTAGCTCTGCCTGGGC  983

seq1  CTCCCACGGGTGCCGTTTCAACCTTGGATCTGTATCCATCGGGGTTCGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACGGGTGCCGTTTCAACCTTGGATCTGTATCCATCGGGGTTCGAT  1033

seq1  TTCTCTATGAAGTCATTGGATAAATGTGGAGAGCCTAGAACTGAAGTGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATGAAGTCATTGGATAAATGTGGAGAGCCTAGAACTGAAGTGAA  1083

seq1  CAAGAACACTTAAACATTAAACTTGGAATTC  1129
      |||||||||||||||||||||||||||||||
seq2  CAAGAACACTTAAACATTAAACTTGGAATTC  1114

seq1: chr8_114964426_114965621
seq2: B6Ng01-008A12.g_68_1248

seq1  GAATTCTCAGTTTGGTAATGTGGAGTTTTGAAGGTTAAGAGTTTAGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTTGGTAATGTGGAGTTTTGAAGGTTAAGAGTTTAGCCTG  50

seq1  ACTTCAGGGGTCCATGGTCCTTCAGTCAAGGAGGTGATTGGAGACCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGGGGTCCATGGTCCTTCAGTCAAGGAGGTGATTGGAGACCAGTA  100

seq1  ACGCTTATGGCAAACTGTGCTTCCGATGTTTCGACATTTCCCCAATCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTATGGCAAACTGTGCTTCCGATGTTTCGACATTTCCCCAATCACA  150

seq1  CCATTTTGGTTTTTTTAAAATATGGGTGACAGTAATTTCCCTTACCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGGTTTTTTTAAAATATGGGTGACAGTAATTTCCCTTACCTGTG  200

seq1  GTTTTATTTGCATAGCTTCAGTTACCCAAAGCAAATCATTGTCTAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTGCATAGCTTCAGTTACCCAAAGCAAATCATTGTCTAGAAAT  250

seq1  ACTAAACAACAACAGCAACAACAACAACAACAACAACAACAACAAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAACAACAGCAACAACAACAACAACAACAACAACAACAAAAAAC  300

seq1  CTCTCCAGAAATAAATGTTCATAATTTAAAAATGACCTTTATTATAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGAAATAAATGTTCATAATTTAAAAATGACCTTTATTATAGCAC  350

seq1  TCTGTTATTATGACCATATTCTATTATGAGGTAATATTATTGCTTTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATTATGACCATATTCTATTATGAGGTAATATTATTGCTTTCTTA  400

seq1  TACCCAATATATGGTCACACCTTATCACAGGTAAGAATGAAGAGAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAATATATGGTCACACCTTATCACAGGTAAGAATGAAGAGAAAATA  450

seq1  CTGGAATGTATAACATTAGTGTTTGCTATGGTTTCGGGCATATCCTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGTATAACATTAGTGTTTGCTATGGTTTCGGGCATATCCTGGGG  500

seq1  AAGCTTAGGACATTCCTCTTATAATAAGGGGAATAACTGTATAGTGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAGGACATTCCTCTTATAATAAGGGGAATAACTGTATAGTGTTTC  550

seq1  TCATTATTTTGGTTTTATAAACCATAAGTCAATAACACATGTGACATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTTTGGTTTTATAAACCATAAGTCAATAACACATGTGACATTTA  600

seq1  ACTCTCAATATACATTAGTTACTTCAAGAGAATAATTTTGAAGAGATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAATATACATTAGTTACTTCAAGAGAATAATTTTGAAGAGATGAC  650

seq1  TAAAGATCACTCATATAGCGACAGGAGAATCATCTCTAAATATCTACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCACTCATATAGCGACAGGAGAATCATCTCTAAATATCTACTCT  700

seq1  ATGAACAAGTAGAAAAGCACATTATTCCAATGGAGTCCAGAAAGACCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAGTAGAAAAGCACATTATTCCAATGGAGTCCAGAAAGACCTCA  750

seq1  AGAGATGGTGTCTCTCTAAATCCAGAAGCAGACAATAGTGGCTTAGGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGTGTCTCTCTAAATCCAGAAGCAGACAATAGTGGCTTAGGGTA  800

seq1  GTGTCAAAAGTGGCCAGTGTTCGACAGGGTGACACAAACCCGATTTTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAAAGTGGCCAGTGTTCGACAGGGTGACACAAACCCGATTTTAGG  850

seq1  GCTCTGTCTCTGTACAAGCCAGAAATAACTGGCAGGTTTAACAGACAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCTCTGTACAAGCCAGAAATAACTGGCAGGTTTAACAGACAGAA  900

seq1  GCTTGCAAATTCGTATCAAGCCACACGGAGTTTGCACAGTGGCTAAAGAC  950
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTTGC-AATTCGTATCAAGCCACAC-GAGTTTGCACAGTGGCTAAAGAC  948

seq1  AGTGCACAAATATGCATCTCCCTTTAGAATTTACAGTTGCTTCACGAAGG  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTGCACAAATATGCATCTCCCTTTAGAATTTACAGTTGCTTCACGAA-G  997

seq1  ATTGTTACTATTTCAATATGATAATAAAGTGACACAGAGCCATCCCATGT  1050
      ||   |||||||||||||||||||| ||||||||||||| ||||||||||
seq2  AT--GTACTATTTCAATATGATAAT-AAGTGACACAGAG-CATCCCATGT  1043

seq1  CCTTATTCCCAAGCTTTAAATCGGAGTTTATTGTCTTCACTGACGCAGTG  1100
      ||| ||| |||||||||||||||||  |||||||||||||||||||| ||
seq2  CCTAATTTCCAAGCTTTAAATCGGA-CTTATTGTCTTCACTGACGCAATG  1092

seq1  AGGAGAGTTGGCTCTTGAAATGCTTTAAAAAGAAAATTTAAATCCCGAGC  1150
      | ||||||||||||||||||||||| |||    |||||||||| ||||||
seq2  A-GAGAGTTGGCTCTTGAAATGCTTCAAA---GAAATTTAAAT-CCGAGC  1137

seq1  GGACAGCTCCACAAATGGTAGGGATGTGTGTTTACTCCTTTGTTTG  1196
      ||||||||||||  |||||| ||  |||    ||  ||||||||||
seq2  GGACAGCTCCAC--ATGGTAAGGGAGTGGTGATATACCTTTGTTTG  1181