BAC Information

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BAC

Clone NameB6Ng01-008H07
Chromosome8 (Build37)
Map Location 94,166,806 - 94,320,835
singlet/doubletdoublet
Overlap geneAJ237917, LOC674324, LOC100040628
Upstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, LOC100041254
Downstream geneIrx3, 4933436C20Rik, Irx5, Irx6, LOC100041325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008H07.bB6Ng01-008H07.g
ACCDH844707DH844708
length751629
definitionDH844707|Mus musculus domesticus DNA, BAC clone: B6Ng01-008H07, 5' end.DH844708|Mus musculus domesticus DNA, BAC clone: B6Ng01-008H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,166,806 - 94,167,554)(94,320,207 - 94,320,835)
sequence
gaattctctctgccaaactcatgggaaagaggactgacttgtgtgcagtt
tggcctgaagcacttgcgtcaatgttctgctcctggaagaatatactttg
acgtaggcattgcttgcttaacagaccacaaaagtgaatgcccctccatg
agtacggcccatgcttggaggcctcacaggagcccaaggatcctgttagg
gcaggatattatgtgacacccaccactggagcaaggaccccgtctcccaa
ttagcatgttaatatttaagggacccttagcctctgctagaaagagttga
ggttacttccaccacctcccccaaccctttctttccagaccaataaacac
atcagccctctctttcaaaacaaaacaaaacaacaacaataaagtgcccc
tcaaggttgagaagataaggtaccctgtctcaagaagtaaagtggagagc
aactgaggaagacaccaggcctggacctgtggcctccacacctaaaatgc
aggtacacacagacaaagaaaagagaaacaaggaatggtgggtctcttgt
ccgcaaggtatggcaaggctcctggaagccaacctgtagaagggaaagag
attatgtagctggaaaaggtctgcatagactggaaggtgatccaaggcct
gggggctcctggtcaggtcccacccctcccaacagggaggtacctagatg
gtatttaagtctttcttccccatacccccattctatttcccacaaccccc
c
gaattcacttcctcgggttctttttcaccagccgcctgcttcacaaggtg
aggatgagagaggggggtctgcccgtgctcattcttaagtaggggtgtcc
agccatttgcagaggcttaaactaaatatcctcagttcccaggggtacct
gccgctccccttcccattgtccagaaatgtgagacctttcctttaggtgg
ctcaagagaccctgaaaccagctttaccaaggaaaacaggaaactaccca
ggggaaaaatgatgttggtaggcacagtcttctgggaggaggtccccaga
gagagggacttcatcagtgggagagagatgggtggacatagggtctctct
ccagtgaagcttccggaactgcccagactgtctatcttgaaagtacagca
ataggaggaggcatgggggagccagccccaccctgggcatatctcataca
gtgtgtgcttcagacaccaccgttcccaagttgacctcagtataccaact
caaccaaagcaaaacagaatctcccaggttcccagcaaaagaggaaaggg
tcccaagaagtccctccattccttaatattgattcctaaaatggagaagg
aaagttagaagacgtggtggggggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_94166806_94167554
seq2: B6Ng01-008H07.b_44_794

seq1  GAATTCTCTCTGCCAAACTCATGGGAAAGAGGACTGACTTGTGTGCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGCCAAACTCATGGGAAAGAGGACTGACTTGTGTGCAGTT  50

seq1  TGGCCTGAAGCACTTGCGTCAATGTTCTGCTCCTGGAAGAATATACTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGAAGCACTTGCGTCAATGTTCTGCTCCTGGAAGAATATACTTTG  100

seq1  ACGTAGGCATTGCTTGCTTAACAGACCACAAAAGTGAATGCCCCTCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGGCATTGCTTGCTTAACAGACCACAAAAGTGAATGCCCCTCCATG  150

seq1  AGTACGGCCCATGCTTGGAGGCCTCACAGGAGCCCAAGGATCCTGTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACGGCCCATGCTTGGAGGCCTCACAGGAGCCCAAGGATCCTGTTAGG  200

seq1  GCAGGATATTATGTGACACCCACCACTGGAGCAAGGACCCCGTCTCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATATTATGTGACACCCACCACTGGAGCAAGGACCCCGTCTCCCAA  250

seq1  TTAGCATGTTAATATTTAAGGGACCCTTAGCCTCTGCTAGAAAGAGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGTTAATATTTAAGGGACCCTTAGCCTCTGCTAGAAAGAGTTGA  300

seq1  GGTTACTTCCACCACCTCCCCCAACCCTTTCTTTCCAGACCAATAAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTTCCACCACCTCCCCCAACCCTTTCTTTCCAGACCAATAAACAC  350

seq1  ATCAGCCCTCTCTTTCAAAACAAAACAAAACAACAACAATAAAGTGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCCTCTCTTTCAAAACAAAACAAAACAACAACAATAAAGTGCCCC  400

seq1  TCAAGGTTGAGAAGATAAGGTACCCTGTCTCAAGAAGTAAAGTGGAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTGAGAAGATAAGGTACCCTGTCTCAAGAAGTAAAGTGGAGAGC  450

seq1  AACTGAGGAAGACACCAGGCCTGGACCTGTGGCCTCCACACCTAAAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGAAGACACCAGGCCTGGACCTGTGGCCTCCACACCTAAAATGC  500

seq1  AGGTACACACAGACAAAGAAAAGAGAAACAAGGAATGGTGGGTCTCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACACACAGACAAAGAAAAGAGAAACAAGGAATGGTGGGTCTCTTGT  550

seq1  CCGCAAGGTATGGCAAGGCTCCTGGAAGCCAACCTGTAGAAGGGAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAGGTATGGCAAGGCTCCTGGAAGCCAACCTGTAGAAGGGAAAGAG  600

seq1  ATTATGTAGCTGGAAAAGGTCTGCATAGACTGGAAGGTGATCCAAGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTAGCTGGAAAAGGTCTGCATAGACTGGAAGGTGATCCAAGGCCT  650

seq1  -GGGGCTCCTGGTCAGGTCCCACCCCTCCCAACA-GGAGGTACCTAGATG  698
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGGGCTCCTGGTCAGGTCCCACCCCTCCCAACAGGGAGGTACCTAGATG  700

seq1  GTATTTAAGTCTTTCTTCCCTATACCCCCATTCTATTTCCCACAACCCCC  748
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTATTTAAGTCTTTCTTCCCCATACCCCCATTCTATTTCCCACAACCCCC  750

seq1  C  749
      |
seq2  C  751

seq1: chr8_94320207_94320835
seq2: B6Ng01-008H07.g_67_695 (reverse)

seq1  ACCCCCCCCCCACCACGTCTTCTAACTTTCCTTCTCCATTTTAGGAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCCCACCACGTCTTCTAACTTTCCTTCTCCATTTTAGGAATCA  50

seq1  ATATTAAGGAATGGAGGGACTTCTTGGGACCCTTTCCTCTTTTGCTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGGAATGGAGGGACTTCTTGGGACCCTTTCCTCTTTTGCTGGGA  100

seq1  ACCTGGGAGATTCTGTTTTGCTTTGGTTGAGTTGGTATACTGAGGTCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAGATTCTGTTTTGCTTTGGTTGAGTTGGTATACTGAGGTCAAC  150

seq1  TTGGGAACGGTGGTGTCTGAAGCACACACTGTATGAGATATGCCCAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACGGTGGTGTCTGAAGCACACACTGTATGAGATATGCCCAGGGT  200

seq1  GGGGCTGGCTCCCCCATGCCTCCTCCTATTGCTGTACTTTCAAGATAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGCTCCCCCATGCCTCCTCCTATTGCTGTACTTTCAAGATAGAC  250

seq1  AGTCTGGGCAGTTCCGGAAGCTTCACTGGAGAGAGACCCTATGTCCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGCAGTTCCGGAAGCTTCACTGGAGAGAGACCCTATGTCCACCC  300

seq1  ATCTCTCTCCCACTGATGAAGTCCCTCTCTCTGGGGACCTCCTCCCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTCCCACTGATGAAGTCCCTCTCTCTGGGGACCTCCTCCCAGAA  350

seq1  GACTGTGCCTACCAACATCATTTTTCCCCTGGGTAGTTTCCTGTTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGCCTACCAACATCATTTTTCCCCTGGGTAGTTTCCTGTTTTCCT  400

seq1  TGGTAAAGCTGGTTTCAGGGTCTCTTGAGCCACCTAAAGGAAAGGTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGCTGGTTTCAGGGTCTCTTGAGCCACCTAAAGGAAAGGTCTCA  450

seq1  CATTTCTGGACAATGGGAAGGGGAGCGGCAGGTACCCCTGGGAACTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGGACAATGGGAAGGGGAGCGGCAGGTACCCCTGGGAACTGAGG  500

seq1  ATATTTAGTTTAAGCCTCTGCAAATGGCTGGACACCCCTACTTAAGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGTTTAAGCCTCTGCAAATGGCTGGACACCCCTACTTAAGAATG  550

seq1  AGCACGGGCAGACCCCCCTCTCTCATCCTCACCTTGTGAAGCAGGCGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGGCAGACCCCCCTCTCTCATCCTCACCTTGTGAAGCAGGCGGCT  600

seq1  GGTGAAAAAGAACCCGAGGAAGTGAATTC  629
      |||||||||||||||||||||||||||||
seq2  GGTGAAAAAGAACCCGAGGAAGTGAATTC  629