BAC Information

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BAC

Clone NameB6Ng01-008H17
Chromosome8 (Build37)
Map Location 64,511,606 - 64,681,545
singlet/doubletdoublet
Overlap geneBC013672, Anxa10, LOC100040775
Upstream geneNek1, Sh3rf1, EG664975, Cbr4, Palld, LOC100040872
Downstream geneLOC384830, LOC100040804, LOC665267, Spock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008H17.bB6Ng01-008H17.g
ACCDH844723DH844724
length1,1121,134
definitionDH844723|Mus musculus domesticus DNA, BAC clone: B6Ng01-008H17, 5' end.DH844724|Mus musculus domesticus DNA, BAC clone: B6Ng01-008H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,511,606 - 64,512,560)(64,680,393 - 64,681,545)
sequence
gaattctcccaatattattgtaagctcaccctttctaactttttctgaag
tcgggctggctggttcaactcagctcttccaggccaaagtcctctccaag
ctgactgattcaatctggcttctttggacttctgactgaattgctctgct
tggccttataaataacaacttttcaatatgttctaatcttttggctagtt
ctcattttcattctcattctgtcttcacctgcaacctttctctgtaaaac
tgtcctgataaaactgccttttctccctctccctccctctttccttccct
gtttctccccctcccctttcccctgtccctgtccctctcccccttctctc
tcagctgctctctcagattgcctctgttttcatgagagttgggcatatcc
tatttctgactcattctgccagatatttctctgatttgtcaccttgtctg
cccctcaattagatgttactttcaaacatggctgcttccttctacaaact
aatcttacctctattattaaggattaaaggtgtgtgctgagcatatttat
attctagccagataatactgtaattcactgtctgtattctgactggacca
cacagacctagaaagtctttgggtatcatcccttgcctgatcagccatat
tgttggattaaaatttctctacagataactacaagttctaagttgtaagc
ctctgtccatgtgaataactaaaaacttgtatttctttaggtcattctac
acacacttggtatcaatcacacacaagccccggtgctgtggccatacgca
ttgatagtcaaggaagaaaaattccacttaatgcctatgcacttgatttc
tataagcatggatcccttattggattagtccaggaaataggtatgtttta
tcttgaaattccaagaaatgactattcctgacaaacatattagatttcac
ttccagacaatggcacagatgatgcatatttatacatttatttctagtta
gcagcaaagttagcacatgggccacctcacttgatctaaatatatgctaa
atggtgtctttgtgttattcaatatatctaccttaacggttctatttatg
ccattagtattt
gaattccaggacagccagggctatacagagaaaccctgtctcgaaaaaca
aaacaaaacaaaacaaacaaacaaaaacaaacaaaaaccaaaacaagtcc
tgggctacatgtttacactagtttagagaagttcaatacagtccttgagc
ctcacatctcataaaaatgaagctgacttgtaccattgctatactcagta
gcagagaaaagttcaggaaaagtatagccactttatcagcttgaagatgg
gggtgaggtgtacaatgccatctattcattaaatcatgagatttgagaag
cccatattgatgggtaccacattttgcaacttactaaaaacccttaatta
aagccatgtagctacagaattgttttgtatatgtctttttttttcaagat
gtaaatttttcaagacgaattctgatcataggtccctcaatgtaatactc
tggtcctgcagctgcatagtcaaatacatccccctgcttactactaagca
atattctttttgaaaaacagatgtgtcagaaaggaatgaaaaccgtctta
tctattcagagttacatttataagagatacgtaatcagcgttatcttcag
aatccacccctctttgggaaagttttcacttctgatgcagttgcaaagag
aagtaaaagggctgctttctcattgaacagcctttttctgtgccctaatc
acgtctgtatcctcggtctctattttgatggaacagttcgtctatgcaag
tgtgatcatgcatagcataaaagtccatcaaatagactacaattatgaaa
tatgttgtcacaaagcagcgatgaattctccctctctcctcatcattttg
catgtgctttgcaaaattggaatgagtctcgtgaagagtctagaatctgg
cctttaccacttctgtaacactctgtcctcagaatctctctctctttcca
ggtattaattcttcttcctttctctctgcgcactgctatactagtgactg
tagtgagatcggcttggatttcatgtgttaatttaaaatgtctctttgcc
ctgctgtttgaaattcatcacccgatataattgaagatccatcattcctt
tctgaatattcctgcaatacctaatccagcacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_64511606_64512560
seq2: B6Ng01-008H17.b_218_1155

seq1  AATATGTTCTAATCTTTTGGCTAGTTCTCATTTTCATTCTCATTCTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTCTAATCTTTTGGCTAGTTCTCATTTTCATTCTCATTCTGTCT  50

seq1  TCACCTGCAACCTTTCTCTGTAAAACTGTCCTGATAAAACTGCCTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCAACCTTTCTCTGTAAAACTGTCCTGATAAAACTGCCTTTTCT  100

seq1  CCCTCTCCCTCCCTCTTTCCTTCCCTGTTTCTCCCCCTCCCCTTTCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCCTCCCTCTTTCCTTCCCTGTTTCTCCCCCTCCCCTTTCCCCT  150

seq1  GTCCCTGTCCCTCTCCCCCTTCTCTCTCAGCTGCTCTCTCAGATTGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTCCCTCTCCCCCTTCTCTCTCAGCTGCTCTCTCAGATTGCCTC  200

seq1  TGTTTTCATGAGAGTTGGGCATATCCTATTTCTGACTCATTCTGCCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATGAGAGTTGGGCATATCCTATTTCTGACTCATTCTGCCAGAT  250

seq1  ATTTCTCTGATTTGTCACCTTGTCTGCCCCTCAATTAGATGTTACTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTGATTTGTCACCTTGTCTGCCCCTCAATTAGATGTTACTTTCA  300

seq1  AACATGGCTGCTTCCTTCTACAAACTAATCTTACCTCTATTATTAAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCTGCTTCCTTCTACAAACTAATCTTACCTCTATTATTAAGGAT  350

seq1  TAAAGGTGTGTGCTGAGCATATTTATATTCTAGCCAGATAATACTGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGTGTGCTGAGCATATTTATATTCTAGCCAGATAATACTGTAAT  400

seq1  TCACTGTCTGTATTCTGACTGGACCACACAGACCTAGAAAGTCTTTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCTGTATTCTGACTGGACCACACAGACCTAGAAAGTCTTTGGGT  450

seq1  ATCATCCCTTGCCTGATCAGCCATATTGTTGGATTAAAATTTCTCTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCCTTGCCTGATCAGCCATATTGTTGGATTAAAATTTCTCTACAG  500

seq1  ATAACTACAAGTTCTAAGTTGTAAGCCTCTGTCCATGTGAATAACTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTACAAGTTCTAAGTTGTAAGCCTCTGTCCATGTGAATAACTAAAA  550

seq1  ACTTGTATTTCTTTAGGTCATTCTACACACACTTGGTATCAATCACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTATTTCTTTAGGTCATTCTACACACACTTGGTATCAATCACACAC  600

seq1  AAGCCCCGGTGCTGTGGCCATACGCATTGGATAGTCAAGGAAGAAAAATT  650
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGCCCCGGTGCTGTGGCCATACGCATT-GATAGTCAAGGAAGAAAAATT  649

seq1  CCACTTAATGCCTATGCACTTGATTTCTATAAGCATGGATCCCTTATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAATGCCTATGCACTTGATTTCTATAAGCATGGATCCCTTATTGG  699

seq1  ATTAGTCCAGGACAATAGGTATGTTTTATCTTGAAAATTCCAAGAAATGA  750
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  ATTAGTCCAGGA-AATAGGTATGTTTTATCTTG-AAATTCCAAGAAATGA  747

seq1  CTATTCCTGACAAACATATTAGATTTTCACTTCCAGAACAAATGGCACAG  800
      ||||||||||||||||||||||| |||||||||||||   ||||||||||
seq2  CTATTCCTGACAAACATATTAGA-TTTCACTTCCAGA--CAATGGCACAG  794

seq1  ATGATGGCATATTTTATACATTTATTTCTAGTTTAGCAGCAAAAGTTTAG  850
      ||||| ||||| ||||||||||||||||||| |||||||||||   ||||
seq2  ATGAT-GCATA-TTTATACATTTATTTCTAG-TTAGCAGCAAA--GTTAG  839

seq1  CACATGGGCCAACTCACTTGATCTAAATATATGCCTTAAAT-GTGTCTTT  899
      ||||||||||| ||||||||||||||||||||||  ||||| ||||||||
seq2  CACATGGGCCACCTCACTTGATCTAAATATATGC--TAAATGGTGTCTTT  887

seq1  GTGTATATCAAATATATCTTTACATT-ACAGTTCTATTTATGCACCATTT  948
      |||| |||  ||||||||  ||| || || ||||||||||||  ||| ||
seq2  GTGT-TATTCAATATATC--TACCTTAACGGTTCTATTTATG--CCA-TT  931

seq1  AGTATTT  955
      |||||||
seq2  AGTATTT  938

seq1: chr8_64680393_64681545
seq2: B6Ng01-008H17.g_67_1200 (reverse)

seq1  GTGTGCATGTGATTAGGTGATTGGCAGGAATATTCAAGAAAGGAAATTGA  50
      |||||| || |||||||| ||| |||||||||||| |||||||||  |||
seq2  GTGTGC-TG-GATTAGGT-ATT-GCAGGAATATTC-AGAAAGGAA--TGA  43

seq1  TGGTATCCTCCACATTATAATCGGGTGATGAATTTTCAAACAGCAGGGCA  100
      ||| ||| ||   ||||| ||||||||||||| |||||||||||||||||
seq2  TGG-ATCTTC--AATTAT-ATCGGGTGATGAA-TTTCAAACAGCAGGGCA  88

seq1  AAGAGACATTTTAAATTAACACATGAAAATCCAAGCCCGATCTTCACTAA  150
      ||||||||||||||||||||||||| ||||||||| |||||| ||||| |
seq2  AAGAGACATTTTAAATTAACACATG-AAATCCAAG-CCGATC-TCACT-A  134

seq1  CAGTCACTAAGTATAGCAGTGCGCAGAGAGAAAGGAAGAAGAATTAATAC  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACT-AGTATAGCAGTGCGCAGAGAGAAAGGAAGAAGAATTAATAC  183

seq1  CTGGGAAAGAGAGAGAGATTCTGAGGACAGAGTGTTACAGAAGTGGGTAA  250
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CT-GGAAAGAGAGAGAGATTCTGAGGACAGAGTGTTACAGAAGT-GGTAA  231

seq1  AGGCCAGATTCTAGACTCTTCACGAGACTCATTCCAATTTTGCAAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGATTCTAGACTCTTCACGAGACTCATTCCAATTTTGCAAAGCAC  281

seq1  ATGCAAAATGATGAGGAGAGAGGGAGAATTCATCGCTGCTTTGTGACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAATGATGAGGAGAGAGGGAGAATTCATCGCTGCTTTGTGACAAC  331

seq1  ATATTTCATAATTGTAGTCTATTTGATGGACTTTTATGCTATGCATGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATAATTGTAGTCTATTTGATGGACTTTTATGCTATGCATGATC  381

seq1  ACACTTGCATAGACGAACTGTTCCATCAAAATAGAGACCGAGGATACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCATAGACGAACTGTTCCATCAAAATAGAGACCGAGGATACAGA  431

seq1  CGTGATTAGGGCACAGAAAAAGGCTGTTCAATGAGAAAGCAGCCCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATTAGGGCACAGAAAAAGGCTGTTCAATGAGAAAGCAGCCCTTTTA  481

seq1  CTTCTCTTTGCAACTGCATCAGAAGTGAAAACTTTCCCAAAGAGGGGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTGCAACTGCATCAGAAGTGAAAACTTTCCCAAAGAGGGGTGG  531

seq1  ATTCTGAAGATAACGCTGATTACGTATCTCTTATAAATGTAACTCTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAGATAACGCTGATTACGTATCTCTTATAAATGTAACTCTGAAT  581

seq1  AGATAAGACGGTTTTCATTCCTTTCTGACACATCTGTTTTTCAAAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGACGGTTTTCATTCCTTTCTGACACATCTGTTTTTCAAAAAGAA  631

seq1  TATTGCTTAGTAGTAAGCAGGGGGATGTATTTGACTATGCAGCTGCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTTAGTAGTAAGCAGGGGGATGTATTTGACTATGCAGCTGCAGGA  681

seq1  CCAGAGTATTACATTGAGGGACCTATGATCAGAATTCGTCTTGAAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTATTACATTGAGGGACCTATGATCAGAATTCGTCTTGAAAAATT  731

seq1  TACATCTTGAAAAAAAAAGACATATACAAAACAATTCTGTAGCTACATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTGAAAAAAAAAGACATATACAAAACAATTCTGTAGCTACATGG  781

seq1  CTTTAATTAAGGGTTTTTAGTAAGTTGCAAAATGTGGTACCCATCAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTAAGGGTTTTTAGTAAGTTGCAAAATGTGGTACCCATCAATAT  831

seq1  GGGCTTCTCAAATCTCATGATTTAATGAATAGATGGCATTGTACACCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCTCAAATCTCATGATTTAATGAATAGATGGCATTGTACACCTCA  881

seq1  CCCCCATCTTCAAGCTGATAAAGTGGCTATACTTTTCCTGAACTTTTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCTTCAAGCTGATAAAGTGGCTATACTTTTCCTGAACTTTTCTC  931

seq1  TGCTACTGAGTATAGCAATGGTACAAGTCAGCTTCATTTTTATGAGATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGAGTATAGCAATGGTACAAGTCAGCTTCATTTTTATGAGATGT  981

seq1  GAGGCTCAAGGACTGTATTGAACTTCTCTAAACTAGTGTAAACATGTAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCAAGGACTGTATTGAACTTCTCTAAACTAGTGTAAACATGTAGC  1031

seq1  CCAGGACTTGTTTTGGTTTTTGTTTGTTTTTGTTTGTTTGTTTTGTTTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTTGTTTTGGTTTTTGTTTGTTTTTGTTTGTTTGTTTTGTTTTG  1081

seq1  TTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAA  1131

seq1  TTC  1153
      |||
seq2  TTC  1134