BAC Information

Click to search

BAC

Clone NameB6Ng01-008N10
Chromosome8 (Build37)
Map Location 123,826,504 - 123,955,597
singlet/doubletdoublet
Overlap genenone
Upstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
Downstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008N10.bB6Ng01-008N10.g
ACCDH844961DH844962
length1,1051,058
definitionDH844961|Mus musculus domesticus DNA, BAC clone: B6Ng01-008N10, 5' end.DH844962|Mus musculus domesticus DNA, BAC clone: B6Ng01-008N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,826,504 - 123,827,625)(123,954,538 - 123,955,597)
sequence
gaattcttttgcctcagtttctttcccgttgtctgtctatatcgctttca
ccactacagctaacatcagcagcagcagcagaagctccaccacaacactg
tcactgtagccacaatagccatcacccttgtcatcgctattgccatcatt
gtcaccatcactatcaccaccgtcttcatcaccacagtcaacatcagcat
cattacatcaccatcattacatcaccagaatcagcatcaccgtcatcaca
tcatcattacatcaccacagtcagcatcagcatcaccatcattacatcac
caccattatagtcatcagcatcatcctcatcccatcaccagagtcagtat
caccatcattacaccaccaccatcagcttcagcatcattacattaccctc
attacatcataccagcagcagcatcatcaccatcattacatcaccaacat
caccatcattacattaccaccatcagcatcaccatcatgacatcaccacc
attacatcacgaccgccatcactgtcatcaccaccttcattgtatgaacc
gttactgagttctcgctatgagtctcctaggaagatgtttcagtgccccc
ccttgccccctctcctccggccgtcacagtaaacccatgttccagatgag
gaaacaggtccttggaagctggtctccctgagagagcctccagtcactca
ctcgctccttattaagtctttcaacaaatcttcaccacgtgtctgtcacg
aggtgcggagcacgtgaagccatggctgccagctccaaaggcgttagcca
ggtgcacgggtcatacatattaataagtgtaacaaaattccagaattgcc
gtaagccaacaaaaggacgcctggggccaaaggaacaagaaatcaactta
gtctccaaaacattccctgaattatgcatatgattcagccttctcaagtg
atcctgggtactaagagtttccacccgagcttgtgtgtgtgaaaacacta
cttctagcaatagtgtggaggggctcatatctctttacagcataccacca
acacatatatgaagctcatagtccactcaaggccacagtcaggcttgctc
tacgg
gaattccagtgcgcactcctgtcagcctggtcttggaaggcagctggtta
ctttggcccacgcccagttctggctctccgctctgctttgccctctaccc
ccaactttcctctttctttcggaagaaaaaaaatgtcctaatcagagaga
ggcctgaagtcatggctgagtgagactgaagaagtggctctgtttgctgg
ttctaacaggctctgagcctggggtccctgcctcctgtctctcttacgca
cagctggtaccagcgtcttcttccttttccctggtaggttgatgtgaggt
gaagctgacccttattttacatatggatccttgtgtggtgacccaggtca
gggtggagatctctctcttgcctcctggggatctccagtcacctctcttg
atcagtgacctttcctacagtgggtggctgtgactcgggtcactgtacgg
tcctctccttttgtccttgttagggtgactattgctgcgacaaagcacca
tgaccaaaaaacaagttggggaggaaagggtttattcagcttacacttcc
atactgctgtttatcaccaaaggaagccagggttggaacttaagcaggcc
tggaacctggaggcaggagctgatgcagaggccatggagggatactgctt
actggcttttctcaccatagcttgctcagcctgctttcttatagaatcca
gggccatctgcccagaaatggcaccacccacattgggcaggaccctcccc
catccatcactaattacgaaaatcctcacagccatatcttatggggggca
tttgcccaattgaggctcctcttctctgatgactctagcttgtgtcgagt
tgacagaactagcagcatccctgtgtctgtctccttgagtcatctttttc
tcaattaaatttaaagcacaaaatatttagctcttcagatctctcgtgtc
tatgagggggtactttgattacgtcacctctatgatttgcttatcccttc
cctgcaggtctcccccatatttcatgtcttatctcttctctcatgggctt
agtattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_123826504_123827625
seq2: B6Ng01-008N10.b_47_1151

seq1  GAATTCTTTTGCCTCAGTTTCTTTCCCGTTGTCTGTCTATATCGCTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCCTCAGTTTCTTTCCCGTTGTCTGTCTATATCGCTTTCA  50

seq1  CCACTACAGCTAACATCAGCAGCAGCAGCAGAAGCTCCACCACAACACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACAGCTAACATCAGCAGCAGCAGCAGAAGCTCCACCACAACACTG  100

seq1  TCACTGTAGCCACAATAGCCATCACCCTTGTCATCGCTATTGCCATCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTAGCCACAATAGCCATCACCCTTGTCATCGCTATTGCCATCATT  150

seq1  GTCACCATCACTATCACCACCGTCTTCATCACCACAGTCAACATCAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATCACTATCACCACCGTCTTCATCACCACAGTCAACATCAGCAT  200

seq1  CATTACATCACCATCATTACATCACCAGAATCAGCATCACCGTCATCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATCACCATCATTACATCACCAGAATCAGCATCACCGTCATCACA  250

seq1  TCATCATTACATCACCACAGTCAGCATCAGCATCACCATCATTACATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTACATCACCACAGTCAGCATCAGCATCACCATCATTACATCAC  300

seq1  CACCATTATAGTCATCAGCATCATCCTCATCCCATCACCAGAGTCAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTATAGTCATCAGCATCATCCTCATCCCATCACCAGAGTCAGTAT  350

seq1  CACCATCATTACACCACCACCATCAGCTTCAGCATCATTACATTACCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCATTACACCACCACCATCAGCTTCAGCATCATTACATTACCCTC  400

seq1  ATTACATCATACCAGCAGCAGCATCATCACCATCATTACATCACCAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCATACCAGCAGCAGCATCATCACCATCATTACATCACCAACAT  450

seq1  CACCATCATTACATTACCACCATCAGCATCACCATCATGACATCACCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCATTACATTACCACCATCAGCATCACCATCATGACATCACCACC  500

seq1  ATTACATCACGACCGCCATCACTGTCATCACCACCTTCATTGTATGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCACGACCGCCATCACTGTCATCACCACCTTCATTGTATGAACC  550

seq1  GTTACTGAGTTCTCGCTATGAGTCTCCTAGGAAGATGTTTCAGTGCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGAGTTCTCGCTATGAGTCTCCTAGGAAGATGTTTCAGTGCCCCC  600

seq1  CCTTGCCCCCTCTCCTCCGGCCGTCACAGTAAACCCATGTTCCAGATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCCCCTCTCCTCCGGCCGTCACAGTAAACCCATGTTCCAGATGAG  650

seq1  GAAACAGGTCCTTGGAAGCTGGTCTCCCTGAGAGAGCCTCCAGTCACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTCCTTGGAAGCTGGTCTCCCTGAGAGAGCCTCCAGTCACTCA  700

seq1  CTCGCTCCTTATTAAGTCTTTCAACAAATCTTCACCACGTGTCTGTCAGG  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTCGCTCCTTATTAAGTCTTTCAACAAATCTTCACCACGTGTCTGTCACG  750

seq1  AGGTGCGGAGCACGTGAAGCCATGGCTGCCAGCTCCAAAGGCGTTAGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCGGAGCACGTGAAGCCATGGCTGCCAGCTCCAAAGGCGTTAGCCA  800

seq1  GGTGCACGGGTCATACATATTAATAAGTGTAACAAAATTCCAGAATTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACGGGTCATACATATTAATAAGTGTAACAAAATTCCAGAATTGCC  850

seq1  GTAAGCCAACAAAAGGACGCCTGGGGCCAAAGGAACAAGAAATCAACTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCAACAAAAGGACGCCTGGGGCCAAAGGAACAAGAAATCAACTTA  900

seq1  GTCTCCAAAACATTCCCTGAATTATGCATATGAATTCCAGCCTTCTCAAG  950
      |||||||||||||||||||||||||||||||||  | |||||||||||||
seq2  GTCTCCAAAACATTCCCTGAATTATGCATATGA--TTCAGCCTTCTCAAG  948

seq1  TGATCCTGGGTACTAAGAGTTTCCACCCGAGCTTGTGTGTGTGAAAACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTGGGTACTAAGAGTTTCCACCCGAGCTTGTGTGTGTGAAAACAC  998

seq1  TACCTTCTAGCAAATAGTGTGGA-GCGCTCATATCTCTTTTAACAGTCAT  1049
      || |||||||| ||||||||||| | ||||||||||||||  |||| |||
seq2  TA-CTTCTAGC-AATAGTGTGGAGGGGCTCATATCTCTTT--ACAG-CAT  1043

seq1  ACACACAAACACACAAAAAAGGAAGCTCATAGTCCCAACTCAAAGGGGCC  1099
      || ||| |||||   | | | ||||||||||||||  ||||||   ||||
seq2  AC-CACCAACAC---ATATATGAAGCTCATAGTCC--ACTCAA---GGCC  1084

seq1  ACCAAGTCCAGGC-TGCTCTACGG  1122
      ||  ||| ||||| ||||||||||
seq2  AC--AGT-CAGGCTTGCTCTACGG  1105

seq1: chr8_123954538_123955597
seq2: B6Ng01-008N10.g_70_1127 (reverse)

seq1  TAAATACTAAGGCCATGAGAG-AGAGAAAAGACATGAAA-GTGGGGGAGA  48
      ||||||||||| ||||||||| ||||| |||||||||||  |||||||||
seq2  TAAATACTAAGCCCATGAGAGAAGAGATAAGACATGAAATATGGGGGAGA  50

seq1  CCCTTGCAAGAGGAGGGGATAAGCAGATCAT-GGGGTGACGTAATCAAAG  97
      ||  ||||   ||| |||||||||| ||||| | ||||||||||||||||
seq2  CC--TGCA--GGGAAGGGATAAGCAAATCATAGAGGTGACGTAATCAAAG  96

seq1  TA-CCCCTCATAGACA-GGGAGTTCTGAAAGGCTAAATAATTTTGTGCTT  145
      || ||||||||||||| | ||| ||||||  ||||||| |||||||||||
seq2  TACCCCCTCATAGACACGAGAGATCTGAAGAGCTAAAT-ATTTTGTGCTT  145

seq1  TAAAATTAAATGAG-AAAAGATGACTCAAGGAGACAGACAACAGGGATGC  194
      |||| |||| |||| |||||||||||||||||||||||| ||||||||||
seq2  TAAATTTAATTGAGAAAAAGATGACTCAAGGAGACAGAC-ACAGGGATGC  194

seq1  TGGCTAGTTCTGTCAACTCGACACAAGCTAGAGTCATCAGAGAAGAGGGA  244
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  T-GCTAGTTCTGTCAACTCGACACAAGCTAGAGTCATCAGAGAAGA-GGA  242

seq1  GCCTCAATTGGGCAAATGCCCCCCATAAGATATGGCTGTGGGGAATTTTC  294
      |||||||||||||||||||||||||||||||||||||||| || ||||||
seq2  GCCTCAATTGGGCAAATGCCCCCCATAAGATATGGCTGTGAGG-ATTTTC  291

seq1  GTAATTAGTGATGGATGGGGGAGGGTCCTGCCCAATGTGGGTGGTGCCAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAGTGATGGATGGGGGAGGGTCCTGCCCAATGTGGGTGGTGCCAT  341

seq1  TTCTGGGCAGATGGCCCTGGATTCTATAAGAAAGCAGGCTGAGCAAGCTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCAGATGGCCCTGGATTCTATAAGAAAGCAGGCTGAGCAAGCTA  391

seq1  TGGTGAG-AAAGCCAGTAAGCAGTATCCCTCCATGGCCTCTGCATCAGCT  443
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGAAAAGCCAGTAAGCAGTATCCCTCCATGGCCTCTGCATCAGCT  441

seq1  CCTGCCTCCAGGTTCCAGGCCTGCTTAAGTTCCAACCCTGGCTTCCTTTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCAGGTTCCAGGCCTGCTTAAGTTCCAACCCTGGCTTCCTTTG  491

seq1  GTGATAAACAGCAGTATGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAACAGCAGTATGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCC  541

seq1  AACTTGTTTTTTGGTCATGGTGCTTTGTCGCAGCAATAGTCACCCTAACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTTTTTTGGTCATGGTGCTTTGTCGCAGCAATAGTCACCCTAACA  591

seq1  AGGACAAAAGGAGAGGACCGTACAGTGACCCGAGTCACAGCCACCCACTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAAGGAGAGGACCGTACAGTGACCCGAGTCACAGCCACCCACTG  641

seq1  TAGGAAAGGTCACTGATCAAGAGAGGTGACTGGAGATCCCCAGGAGGCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGGTCACTGATCAAGAGAGGTGACTGGAGATCCCCAGGAGGCAA  691

seq1  GAGAGAGATCTCCACCCTGACCTGGGTCACCACACAAGGATCCATATGTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATCTCCACCCTGACCTGGGTCACCACACAAGGATCCATATGTA  741

seq1  AAATAAGGGTCAGCTTCACCTCACATCAACCTACCAGGGAAAAGGAAGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGGTCAGCTTCACCTCACATCAACCTACCAGGGAAAAGGAAGAA  791

seq1  GACGCTGGTACCAGCTGTGCGTAAGAGAGACAGGAGGCAGGGACCCCAGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTGGTACCAGCTGTGCGTAAGAGAGACAGGAGGCAGGGACCCCAGG  841

seq1  CTCAGAGCCTGTTAGAACCAGCAAACAGAGCCACTTCTTCAGTCTCACTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCCTGTTAGAACCAGCAAACAGAGCCACTTCTTCAGTCTCACTC  891

seq1  AGCCATGACTTCAGGCCTCTCTCTGATTAGGACATTTTTTTTCTTCCGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGACTTCAGGCCTCTCTCTGATTAGGACATTTTTTTTCTTCCGAA  941

seq1  AGAAAGAGGAAAGTTGGGGGTAGAGGGCAAAGCAGAGCGGAGAGCCAGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGAAAGTTGGGGGTAGAGGGCAAAGCAGAGCGGAGAGCCAGAA  991

seq1  CTGGGCGTGGGCCAAAGTAACCAGCTGCCTTCCAAGACCAGGCTGACAGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCGTGGGCCAAAGTAACCAGCTGCCTTCCAAGACCAGGCTGACAGG  1041

seq1  AGTGCGCACTGGAATTC  1060
      |||||||||||||||||
seq2  AGTGCGCACTGGAATTC  1058