BAC Information

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BAC

Clone NameB6Ng01-009E04
Chromosome8 (Build37)
Map Location 112,733,621 - 112,861,766
singlet/doubletdoublet
Overlap geneBC025546, Hydin
Upstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2
Downstream geneLOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009E04.bB6Ng01-009E04.g
ACCDH845250DH845251
length1,1531,056
definitionDH845250|Mus musculus domesticus DNA, BAC clone: B6Ng01-009E04, 5' end.DH845251|Mus musculus domesticus DNA, BAC clone: B6Ng01-009E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,733,621 - 112,734,789)(112,860,713 - 112,861,766)
sequence
gaattcactgtttatcccttgacggagtaaaaagaactgagcagcagtgc
tgttgggatgaaacacaagcaggatggacagtgtggtgctcaggcatgca
ttccacagggggaccaagtgaaacagcagactaaaaaacagagcagagca
gaccaaaaaaagatggaagacaagaggagaaggagcccaaggagcctcgg
aagagtgctgccaggacttcagaggaaattgctaagaacatgagctcagt
gagacaccgaaaacacaaggaagcaaaagcagaaaagttcagggatggat
ttcatgagccaaaaggtgaaaagaaaggcaggggcgttacagcagaagct
gagcgatctcaccttgaacaacaaaaagagagcagaaagaatgaactggg
gatggcaggaggctttgaaacctcagattccactccaagtgatgtatttc
ctccatcgaggccatccagcctgagcctccccaaacagcatcaccaattg
tggaccaagtattcaaatgcaggacactatgagggacaactctcattcaa
actaccacagacccgatggaacatgggtcatgaatggatccacgcttttc
ttacacaaatgttttcttattcttgtggacttgtattaataacttcagga
ttgtgagaaagaaaattcatgtttttcttacatgcccccctctgctttcc
accatgacttgaggcagtatgagaccctcaccaaaagcccggtaggtacc
attaccacggccttagactgtaattactcagttccagctgttcctttata
gcaacacagaccaagaaagtatcttaatgaagataccgagcaggaagttg
gatactacaagaagagactagaggttaaaagacagatccaagataacaac
acactttgaggtcattgatgtgtgggttttaaggcttgtgaatggatgag
tctctcaggaaagcacagagagagggctgtgctggctagtttgatgttaa
ctgacacaagctacagtcatttggaagagggaccttaattgagaaatttc
ctcaccacatggcctgtagtacatttctgatgatgttgtgtgggagggtc
tacagctcatggtggacaggctgttatctgggtacttctaagaaagcaga
tga
gaattccacacccctaagccccttaccccataaaaacccctagcttccga
gcctcggggtagactcccctgcctcctgtgtgaggtacatgtcggcccag
agctctgccaataaagcctcgtgcattttgcatcaagaaggattcttgcg
tgttcgtgggtgtatcctgtccctggactagagtgggggtccccatatcg
ggggtcctacactgaaagagtacatgttaaaagtcagtgttttaagcact
ccccctaaggctgagaaccaccacaagaagcctggggaaataataaagaa
gaaaaataaataaggtttgaaaaaatgtgaagtgtaaagaaaaatcaaag
gaaagttggccctctgagtacgtgaacaaaactaatacagccacagcgat
agaccacacggctaaggaggaaggaggacagccagcaggcttagcagcat
cacaaagacaggagtggctgctctgaacaatcctgagcttggaacttaag
atctcaaagtatggcaaaatatccttaaagttggcttaggaaatgggagc
cagtgattaagaatctgcacctcttttgcaaaagaaaagcatggtttgga
cagagaacttcttagccatttaaggaagtaacaacacaagtctttaaaag
gggctctctcaaagaataaaagaagataataattcctgtacactcaaaat
ttatgttctgttttttttttgtttgtttgtttgtttgtttttaaagacca
atttgttttcatcgggctaaaatctgagataggtattatataaaaagaaa
attagagtatagttttttttttccttacaaatttgaatactgccttaatc
agggtttctactgctgtcatgaacaccatgaccaaaaagaacgtttgcgg
aggaaaggatttttagcttacacttccacattgctgttcttcatcaaagg
aagtttggacaggagctcacacagaggaggatctggaggcaggcactgat
gcaagaggtcatggagggtgttcttactggtttgctttcttcatggcttg
ctcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112733621_112734789
seq2: B6Ng01-009E04.b_47_1199

seq1  GAATTCACTGTTTATCCCTTGACGGAGTAAAAAGAACTGAGCAGCAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTTATCCCTTGACGGAGTAAAAAGAACTGAGCAGCAGTGC  50

seq1  TGTTGGGATGAAACACAAGCAGGATGGACAGTGTGGTGCTCAGGCATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGATGAAACACAAGCAGGATGGACAGTGTGGTGCTCAGGCATGCA  100

seq1  TTCCACAGGGGGACCAAGTGAAACAGCAGACTAAAAAACAGAGCAGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGGGGGACCAAGTGAAACAGCAGACTAAAAAACAGAGCAGAGCA  150

seq1  GACCAAAAAAAGATGGAAGACAAGAGGAGAAGGAGCCCAAGGAGCCTCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAAAAAGATGGAAGACAAGAGGAGAAGGAGCCCAAGGAGCCTCGG  200

seq1  AAGAGTGCTGCCAGGACTTCAGAGGAAATTGCTAAGAACATGAGCTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGCTGCCAGGACTTCAGAGGAAATTGCTAAGAACATGAGCTCAGT  250

seq1  GAGACACCGAAAACACAAGGAAGCAAAAGCAGAAAAGTTCAGGGATGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACCGAAAACACAAGGAAGCAAAAGCAGAAAAGTTCAGGGATGGAT  300

seq1  TTCATGAGCCAAAAGGTGAAAAGAAAGGCAGGGGCGTTACAGCAGAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAGCCAAAAGGTGAAAAGAAAGGCAGGGGCGTTACAGCAGAAGCT  350

seq1  GAGCGATCTCACCTTGAACAACAAAAAGAGAGCAGAAAGAATGAACTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGATCTCACCTTGAACAACAAAAAGAGAGCAGAAAGAATGAACTGGG  400

seq1  GATGGCAGGAGGCTTTGAAACCTCAGATTCCACTCCAAGTGATGTATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGGAGGCTTTGAAACCTCAGATTCCACTCCAAGTGATGTATTTC  450

seq1  CTCCATCGAGGCCATCCAGCCTGAGCCTCCCCAAACAGCATCACCAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCGAGGCCATCCAGCCTGAGCCTCCCCAAACAGCATCACCAATTG  500

seq1  TGGACCAAGTATTCAAATGCAGGACACTATGAGGGACAACTCTCATTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAAGTATTCAAATGCAGGACACTATGAGGGACAACTCTCATTCAA  550

seq1  ACTACCACAGACCCGATGGAACATGGGTCATGAATGGATCCACGCTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCACAGACCCGATGGAACATGGGTCATGAATGGATCCACGCTTTTC  600

seq1  TTACACAAATGTTTTCTTATTCTTGTGGACTTGTATTAATAACTTCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAAATGTTTTCTTATTCTTGTGGACTTGTATTAATAACTTCAGGA  650

seq1  TTGTGAGAAAGAAAATTCATGTTTTTCTTACATGCCCCCCTCTGCTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAAAGAAAATTCATGTTTTTCTTACATGCCCCCCTCTGCTTTCC  700

seq1  ACCATGACTTGAGGCAGTATGAGACCCTCACCAAAAGCCCGGTAGGTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACTTGAGGCAGTATGAGACCCTCACCAAAAGCCCGGTAGGTACC  750

seq1  ATTACCACGGCCTTAGACTGTAATTACTCAGTTCCAGCTGTTCCTTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCACGGCCTTAGACTGTAATTACTCAGTTCCAGCTGTTCCTTTATA  800

seq1  GCAACACAGACCAAGAAAGTATCTTAATGAAGATACCGAGCAGGAAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACAGACCAAGAAAGTATCTTAATGAAGATACCGAGCAGGAAGTTG  850

seq1  GATACTACAAGAAGAGACTAGAGGTTAAAAGACAGATCCAAGATAACAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTACAAGAAGAGACTAGAGGTTAAAAGACAGATCCAAGATAACAAC  900

seq1  ACACTTTGAGGTCATTGATGTGTGGTTTTTAAGGCTTGTGAATGGATGAG  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  ACACTTTGAGGTCATTGATGTGTGGGTTTTAAGGCTTGTGAATGGATGA-  949

seq1  GTCTCTCAGGGAAGGCACAGAGAAGAGGGCTGTGCTGGCTAGTTTGATGT  1000
      |||||||| |||| |||||||| |||||||||||||||||||||||||||
seq2  GTCTCTCA-GGAAAGCACAGAG-AGAGGGCTGTGCTGGCTAGTTTGATGT  997

seq1  TAACTTGACACAAGCTACAGTCATTTTGGAAGAGGGGACCTTAATTGAGA  1050
      |||| |||||||||||||||||| ||||||||| ||||||||||||||| 
seq2  TAAC-TGACACAAGCTACAGTCA-TTTGGAAGA-GGGACCTTAATTGAG-  1043

seq1  AAATTTCCCCACCACATTGGCCTGTAGTACATTTTCTTGATTGATGGTTT  1100
      |||||||| ||||||| |||||||||||||||||   ||| |||||  ||
seq2  AAATTTCCTCACCACA-TGGCCTGTAGTACATTT--CTGA-TGATG--TT  1087

seq1  GTGTGGGAGGGGCCACCAGCTCATGGTGGACAGTGCTG-TATCTGGTGGT  1149
      ||||||||||| | | ||||||||||||||||| |||| ||||||  |||
seq2  GTGTGGGAGGGTCTA-CAGCTCATGGTGGACAG-GCTGTTATCTG--GGT  1133

seq1  AC-TCTAAGAAAGCAGGATGA  1169
      || |||||||||||| |||||
seq2  ACTTCTAAGAAAGCA-GATGA  1153

seq1: chr8_112860713_112861766
seq2: B6Ng01-009E04.g_67_1122 (reverse)

seq1  GCTGAGCAAGCCATG-AGGAAGCAAACCAGTAAGCAGCACCCTCCATGGC  49
      ||||||||||||||| || ||||||||||||||| | ||||||||||| |
seq2  GCTGAGCAAGCCATGAAGAAAGCAAACCAGTAAG-AACACCCTCCATGAC  49

seq1  CTC-TGCATCAGTGCCTGCCTCCAGTTCCTCCTCTGTGTGAGCTCCTGTC  98
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCTTGCATCAGTGCCTGCCTCCAGATCCTCCTCTGTGTGAGCTCCTGTC  99

seq1  CAGACTTCCTTTGGTGATGAACAGCAATGTGGAAGTGTAAGCTGAAAAAT  148
      || |||||||||| ||| ||||||||||||||||||||||||| ||||||
seq2  CAAACTTCCTTTGATGAAGAACAGCAATGTGGAAGTGTAAGCT-AAAAAT  148

seq1  CCTTTCCTCCGC-AACGTTCTTTTTGGTCATGGTGTTTCATGACAGCAGT  197
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  CCTTTCCTCCGCAAACGTTCTTTTTGGTCATGGTG-TTCATGACAGCAGT  197

seq1  AGAAACCCTGATTAAGGCAGTATTCAAATTTGTAAGG-AAAAAAAAACTA  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAACCCTGATTAAGGCAGTATTCAAATTTGTAAGGAAAAAAAAAACTA  247

seq1  TACTCTAATTTTCTTTTTATATAATACCTATCTCAGATTTTAGCCCGATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAATTTTCTTTTTATATAATACCTATCTCAGATTTTAGCCCGATG  297

seq1  -AAACAAATTGGTCTTTAAAAACAAACAAACAAACAAACAAAAAAAAAAC  345
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAATTGGTCTTTAAAAACAAACAAACAAACAAACAAAAAAAAAAC  347

seq1  AGAACATAAATTTTGAGTGTACAGGAATTATTATCTTCTTTTATTCTTTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATAAATTTTGAGTGTACAGGAATTATTATCTTCTTTTATTCTTTG  397

seq1  AGAGAGCCCCTTTTAAAGACTTGTGTTGTTACTTCCTTAAATGGCTAAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCCCTTTTAAAGACTTGTGTTGTTACTTCCTTAAATGGCTAAGA  447

seq1  AGTTCTCTGTCCAAACCATGCTTTTCTTTTGCAAAAGAGGTGCAGATTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTGTCCAAACCATGCTTTTCTTTTGCAAAAGAGGTGCAGATTCT  497

seq1  TAATCACTGGCTCCCATTTCCTAAGCCAACTTTAAGGATATTTTGCCATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACTGGCTCCCATTTCCTAAGCCAACTTTAAGGATATTTTGCCATA  547

seq1  CTTTGAGATCTTAAGTTCCAAGCTCAGGATTGTTCAGAGCAGCCACTCCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGATCTTAAGTTCCAAGCTCAGGATTGTTCAGAGCAGCCACTCCT  597

seq1  GTCTTTGTGATGCTGCTAAGCCTGCTGGCTGTCCTCCTTCCTCCTTAGCC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTGATGCTGCTAAGCCTGCTGGCTGTCCTCCTTCCTCCTTAGCC  647

seq1  GTGTGGTCTATCGCTGTGGCTGTATTAGTTTTGTTCACGTACTCAGAGGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTCTATCGCTGTGGCTGTATTAGTTTTGTTCACGTACTCAGAGGG  697

seq1  CCAACTTTCCTTTGATTTTTCTTTACACTTCACATTTTTTCAAACCTTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTCCTTTGATTTTTCTTTACACTTCACATTTTTTCAAACCTTAT  747

seq1  TTATTTTTCTTCTTTATTATTTCCCCAGGCTTCTTGTGGTGGTTCTCAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCTTCTTTATTATTTCCCCAGGCTTCTTGTGGTGGTTCTCAGC  797

seq1  CTTAGGGGGAGTGCTTAAAACACTGACTTTTAACATGTACTCTTTCAGTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGGGAGTGCTTAAAACACTGACTTTTAACATGTACTCTTTCAGTG  847

seq1  TAGGACCCCCGATATGGGGACCCCCACTCTAGTCCAGGGACAGGATACAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCCCCGATATGGGGACCCCCACTCTAGTCCAGGGACAGGATACAC  897

seq1  CCACGAACACGCAAGAATCCTTCTTGATGCAAAATGCACGAGGCTTTATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGAACACGCAAGAATCCTTCTTGATGCAAAATGCACGAGGCTTTATT  947

seq1  GGCAGAGCTCTGGGCCGACATGTACCTCACACAGGAGGCAGGGGAGTCTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCTCTGGGCCGACATGTACCTCACACAGGAGGCAGGGGAGTCTA  997

seq1  CCCCGAGGCTCGGAAGCTAGGGGTTTTTATGGGGTAAGGGGCTTAGGGGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAGGCTCGGAAGCTAGGGGTTTTTATGGGGTAAGGGGCTTAGGGGT  1047

seq1  GTGGAATTC  1054
      |||||||||
seq2  GTGGAATTC  1056