BAC Information

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BAC

Clone NameB6Ng01-009H03
Chromosome8 (Build37)
Map Location 26,100,748 - 26,226,688
singlet/doubletdoublet
Overlap geneAdam9, Tm2d2, Htra4, Plekha2, LOC100042390
Upstream geneZmat4, 1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32
Downstream geneTacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009H03.bB6Ng01-009H03.g
ACCDH845382DH845383
length1,127989
definitionDH845382|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H03, 5' end.DH845383|Mus musculus domesticus DNA, BAC clone: B6Ng01-009H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,100,748 - 26,101,880)(26,226,136 - 26,226,688)
sequence
gaattcatgatacagctctttgctccacagaaacactctctcccatcatc
atgattcattccaaggttatgccccaattcatgagcaacaatggatgcaa
atgtctccacagtgatttgcccaaactgtacaaacacaggaaggtgcagt
tagacagtgttttctgtgtcagattttttcttttttgtcaaaaggcaatc
tgtctactacaatggcaactctatgtcgatctgtgtccagtgccagccct
acatgcacacactctgacaagaatccagagtgactcatgtgctgataatc
aggcatcaacagaccattccctgtagcttatgacaaagcaaactgatttc
tttaaaatggaacctgttttctcattcataaaaagatagtatcctggtta
attccgtggtcgttccaacacacctcactgaagaactgttgggagtgcac
atgtctacgaggcatttcttccttggcaatggatctaaaagggccagcct
tgtacatgtctatgaggcatcccttgcttgtcagtgaatctacagggcca
gccttgtactgtgggtagttccaggcatggggtcctggctatgtaagaaa
ggtacctgagcatgagccagagtcagcgcacatcaatcctgtggagtttc
tgctgctctgagtctgggccctaacttcccttagtgatggacctgaagtg
taagccatataaataaaccctttcctcctctgagctgcttttggtcatgg
tgttatcacagcaacatagaagaaaactagaatagataataacatgtaat
aaatattaaaaatttgacctagtctctagggaaaagaacacatatgctac
tattactgcgtccttgggaaatgtacaactgctgctgtaaggatctgaag
gaggagcattgagtcagtagacgctgtggactatcctaatgcctctaccc
aaaactgtacttaaagaacacataccacattgatcccacctgcgtggctt
cttgaacatactgttcctacaaacgccattcctgcagttcaccaaagccc
tttcttcttaatgaaatgtaagttataagatgtagttgaggaaaagaaaa
tattagttcctgtttctaagtatcata
gaattccttggatttattagaatttgccttcttaaaagaaatgaggattt
gaaattgatattcaagcttgccatgtgtatatatggcacacacacatata
tgtatacatagatatacatagatatatacacatacatgcatacacagacc
ctgtactggctagttttgtgtcaacttgacacagctggagttatcacaga
gaaaggagcttcagttgaggaaatgcctccatgagatccaactgtaaggc
attttctcaattagtgatcaagggggaaaggccccttgtgggtggaacca
tctctgggctgatagtcttggttgtataagagagcaggctgagcaagcca
ggggaaacaagccagtaatgaacatccctccatggcctctgcatcacctc
ctgctttctgacctgcttgagttccagtcctgacttcctttggtgatgaa
cagtagtatggaagtgtaagccgaataaaccctttccttcctaatttgct
tcttggtcatgatgtttgtgtaggaatagaaaccctaagacagacccata
caaacacacatacacacacagacacacacacacagacacacagacacaca
cacacacacacagatggaatggaggaggaagcagggtctcactatgtagc
ctaggctccccctctgcctctcaaatattgggatgacaggcatgtgctta
actccgttttcgtgatgagtaataccaacagatagatactgagagtcttt
gcatagctgtgtgtatgtaaatatctaaaacatcttattaggagtctaac
aatttccaatactgcctcatgtataagaatcaacaaataaaaatttccac
tgtgacatagctcagtggaaaggtctcctagcagaagtgaggtctgggct
ttgattttctgcatgcagactgattaagtaatcaaacagttatcataatg
taatgatgagttaatctcaagatgtttcactgccaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_26100748_26101880
seq2: B6Ng01-009H03.b_49_1175

seq1  GAATTCATGATACAGCTCTTTGCTCCACAGAAACACTCTCTCCCATCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATACAGCTCTTTGCTCCACAGAAACACTCTCTCCCATCATC  50

seq1  ATGATTCATTCCAAGGTTATGCCCCAATTCATGAGCAACAATGGATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCATTCCAAGGTTATGCCCCAATTCATGAGCAACAATGGATGCAA  100

seq1  ATGTCTCCACAGTGATTTGCCCAAACTGTACAAACACAGGAAGGTGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCACAGTGATTTGCCCAAACTGTACAAACACAGGAAGGTGCAGT  150

seq1  TAGACAGTGTTTTCTGTGTCAGATTTTTTCTTTTTTGTCAAAAGGCAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGTGTTTTCTGTGTCAGATTTTTTCTTTTTTGTCAAAAGGCAATC  200

seq1  TGTCTACTACAATGGCAACTCTATGTCGATCTGTGTCCAGTGCCAGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACTACAATGGCAACTCTATGTCGATCTGTGTCCAGTGCCAGCCCT  250

seq1  ACATGCACACACTCTGACAAGAATCCAGAGTGACTCATGTGCTGATAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACACACTCTGACAAGAATCCAGAGTGACTCATGTGCTGATAATC  300

seq1  AGGCATCAACAGACCATTCCCTGTAGCTTATGACAAAGCAAACTGATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCAACAGACCATTCCCTGTAGCTTATGACAAAGCAAACTGATTTC  350

seq1  TTTAAAATGGAACCTGTTTTCTCATTCATAAAAAGATAGTATCCTGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGGAACCTGTTTTCTCATTCATAAAAAGATAGTATCCTGGTTA  400

seq1  ATTCCGTGGTCGTTCCAACACACCTCACTGAAGAACTGTTGGGAGTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGTGGTCGTTCCAACACACCTCACTGAAGAACTGTTGGGAGTGCAC  450

seq1  ATGTCTACGAGGCATTTCTTCCTTGGCAATGGATCTAAAAGGGCCAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACGAGGCATTTCTTCCTTGGCAATGGATCTAAAAGGGCCAGCCT  500

seq1  TGTACATGTCTATGAGGCATCCCTTGCTTGTCAGTGAATCTACAGGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGTCTATGAGGCATCCCTTGCTTGTCAGTGAATCTACAGGGCCA  550

seq1  GCCTTGTACTGTGGGTAGTTCCAGGCATGGGGTCCTGGCTATGTAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTACTGTGGGTAGTTCCAGGCATGGGGTCCTGGCTATGTAAGAAA  600

seq1  GGTACCTGAGCATGAGCCAGAGTCAGCGCACATCAATCCTGTGGAGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTGAGCATGAGCCAGAGTCAGCGCACATCAATCCTGTGGAGTTTC  650

seq1  TGCTGCTCTGAGTCTGGGCCCTAACTTCCCTTAGTGATGGACCTGAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTCTGAGTCTGGGCCCTAACTTCCCTTAGTGATGGACCTGAAGTG  700

seq1  TAAGCCATATAAATAAACCCTTTCCTCCTCTGAGCTGCTTTTGGTCATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCATATAAATAAACCCTTTCCTCCTCTGAGCTGCTTTTGGTCATGG  750

seq1  TGTTATCACAGCAACATAGAAGAAAACTAGAATAGATAATAACATGTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCACAGCAACATAGAAGAAAACTAGAATAGATAATAACATGTAAT  800

seq1  AAATATTAAAAATTTGACCTAGTCTCTAGGGAAAAGAACACATATGCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAAAAATTTGACCTAGTCTCTAGGGAAAAGAACACATATGCTAC  850

seq1  TATTACTGCGTCCTT-GGAAATGTACAACTGCTGCTGTAAGGATCTGAAG  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTACTGCGTCCTTGGGAAATGTACAACTGCTGCTGTAAGGATCTGAAG  900

seq1  GAGGAGCATTGAGTCAGTAGACGCTGTGGACTATCCTAATGCCTCTACCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCATTGAGTCAGTAGACGCTGTGGACTATCCTAATGCCTCTACCC  950

seq1  AAAACTGTACTTAAAGAACAACATACCACATTGATCCCACCTGCGTGGCT  999
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAACTGTACTTAAAGAAC-ACATACCACATTGATCCCACCTGCGTGGCT  999

seq1  CCTTGAACATACTGTTCCTACAAACGCCATTCCTGCAGTTCCACCAAAG-  1048
       ||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  TCTTGAACATACTGTTCCTACAAACGCCATTCCTGCAGTT-CACCAAAGC  1048

seq1  CCTTTCTTCCTAAATGAAAATGTAAAGTTATAAGATGTAGTTGAGGAAAA  1098
      |||||||| || |||| |||||| |||||||||||||||||||||| |||
seq2  CCTTTCTT-CTTAATG-AAATGT-AAGTTATAAGATGTAGTTGAGG-AAA  1094

seq1  AGAAACATATTAG-TCCTGTTTCTACAGTAATCATA  1133
      ||||| ||||||| ||||||||||| ||| ||||||
seq2  AGAAA-ATATTAGTTCCTGTTTCTA-AGT-ATCATA  1127

seq1: chr8_26226136_26226688
seq2: B6Ng01-009H03.g_68_620 (reverse)

seq1  TTGTATGGGTCTGTCTTAGGGTTTCTATTCCTACACAAACATCATGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGGGTCTGTCTTAGGGTTTCTATTCCTACACAAACATCATGACCA  50

seq1  AGAAGCAAATTAGGAAGGAAAGGGTTTATTCGGCTTACACTTCCATACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAATTAGGAAGGAAAGGGTTTATTCGGCTTACACTTCCATACTA  100

seq1  CTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGAAAG  150

seq1  CAGGAGGTGATGCAGAGGCCATGGAGGGATGTTCATTACTGGCTTGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGTGATGCAGAGGCCATGGAGGGATGTTCATTACTGGCTTGTTTC  200

seq1  CCCTGGCTTGCTCAGCCTGCTCTCTTATACAACCAAGACTATCAGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTTGCTCAGCCTGCTCTCTTATACAACCAAGACTATCAGCCCAG  250

seq1  AGATGGTTCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAA  300

seq1  AATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCT  350

seq1  TTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTA  400

seq1  CAGGGTCTGTGTATGCATGTATGTGTATATATCTATGTATATCTATGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTGTGTATGCATGTATGTGTATATATCTATGTATATCTATGTAT  450

seq1  ACATATATGTGTGTGTGCCATATATACACATGGCAAGCTTGAATATCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATGTGTGTGTGCCATATATACACATGGCAAGCTTGAATATCAAT  500

seq1  TTCAAATCCTCATTTCTTTTAAGAAGGCAAATTCTAATAAATCCAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCCTCATTTCTTTTAAGAAGGCAAATTCTAATAAATCCAAGGAA  550

seq1  TTC  553
      |||
seq2  TTC  553