BAC Information

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BAC

Clone NameB6Ng01-009L10
Chromosome8 (Build37)
Map Location 96,888,325 - 97,019,520
singlet/doubletdoublet
Overlap geneSlc12a3, Herpud1, EG434339
Upstream gene2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555
Downstream geneAI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009L10.bB6Ng01-009L10.g
ACCDH845583DH845584
length1,050350
definitionDH845583|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L10, 5' end.DH845584|Mus musculus domesticus DNA, BAC clone: B6Ng01-009L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,018,466 - 97,019,520)(96,888,325 - 96,888,674)
sequence
gaattcaatccctgggatatgactcgtgaaacttctcctctgacctctga
acacacactgcacgtgtgggtacaacacaccccctcccatccccaaacaa
taagtgaataaatgtaataaaatgcttttaatgaattggactcacacgac
ctgaccctgagagaaaaccacactgtcactgaatagtaattagctgcagg
gagatctcccatggctggattcaatcctttcagacgatgcaaacccctct
ttctgggtgtgttttgtacggagaagtgcataggaaacacacctgaggtc
tacacggattagcttgtccaatggtctggaattgatttgaggtggagcca
gaagtcagggcatgaggttgctacaacctgggaaagcaggtttgatgcag
gtgagactataggctcactaatcggaaaatccaaaatccaaagtctgtaa
tagtttgagcgctgatgtcacactgcaagtggaaaattccagtcctgaca
ggtcccagccctaagtgcagcaggtccattatagaaacgggatattgctt
tcagagggcttacacgaaacgagtgaatgttgtgtttagacccggttccc
tttcccaaagtatcccattctgcatatgcaaacattccaaaatctgaaga
aaatttaaaacccttccagtcctgagtatcttggataagaactacacaac
cagaaagtaaaaacatagtatacaatgagcgagaggaggacaagactgtg
acaaatgacaccatgattcggtgagaggacgggtttgctttagcgagggg
cttcagcctacagtttttaaaaaggttattcttgtataagaatccttaac
actgactcccaaggaaaggctcaatgtcttgttcacagaaatagaaactg
aagtacaaggactcagtccagctttcatgtggctgagagatttctggtta
tggtcaagggctggtttgttctgagtgtgaggaatttcagggacaagggg
ttaaaggtgatgaaattagtcataagcaggatgaagagaactgtgtgggg

ttcgggtttttgttgttgttgtttcaagacagagtttctctgtgtagccc
tggctgtcctggaactcactctgtagaccaggttggcctcgaactcagaa
atctgcctgcctctgcctctcaagtgctgggattaaaggtgtacgccact
actgtccggctagaattcttaagatggtagaaaagtcactttcttatctg
cacagccaaacatgactgaacagcattctaggatatcctgttacttgcat
cgtgttttacagctaggacaaaaggcccctgagaaaccatgctggaatcg
tccctgacatccttcatggggcgggggtggtggcggtggtggtgatggtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_97018466_97019520
seq2: B6Ng01-009L10.b_45_1094 (reverse)

seq1  CCCCACACAAGTCTCTCCTTCATCCTGCCTCTATGGCTAATCTCATCACC  50
      |||||||||  |||   |||||||||||   |||| ||||| ||||||||
seq2  CCCCACACAGTTCT---CTTCATCCTGC--TTATGACTAATTTCATCACC  45

seq1  TTTGAACCCCTTGTCCCTGAAATACCTCACACTTCAGAACAACCAGGCCC  100
      ||| ||||||||||||||||||| |||||||| ||||||||| |  ||||
seq2  TTT-AACCCCTTGTCCCTGAAATTCCTCACAC-TCAGAACAAACCAGCCC  93

seq1  TTGACCATAACCAGGAGTTCTCTCAGCCACATGGAAGCTGG-CTGAGTCC  149
      ||||||||||||| ||  ||||||||||||||| ||||||| ||||||||
seq2  TTGACCATAACCA-GAAATCTCTCAGCCACATGAAAGCTGGACTGAGTCC  142

seq1  TTGTACTTCAGTTTCTACTTCTGTGAACAAGACATTGAGCCTTTCCTTGG  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGTACTTCAGTTTCTATTTCTGTGAACAAGACATTGAGCCTTTCCTTGG  192

seq1  GAGTCAGTGTTAA-GATTCTTATACAAGAATAACCTTTTTAAAAACTGTA  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTGTTAAGGATTCTTATACAAGAATAACCTTTTTAAAAACTGTA  242

seq1  GGCTGGAGCCCCTCGCT-AAGCAAACCCGTCCTCTCACCGAATCATGGTG  297
      ||||| ||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGCTGAAGCCCCTCGCTAAAGCAAACCCGTCCTCTCACCGAATCATGGTG  292

seq1  TCATTTGTCACAGTCTTGTCCTCCTCTCGCTCATTGTATACTATGTTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTCACAGTCTTGTCCTCCTCTCGCTCATTGTATACTATGTTTTT  342

seq1  ACTTTCTGGTTGTGTAGTTCTTATCCAAGATACTCAGGACTGGAAGGGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGGTTGTGTAGTTCTTATCCAAGATACTCAGGACTGGAAGGGTT  392

seq1  TTAAATTTTCTTCAGATTTTGGAATGTTTGCATATGCAGAATGGGATACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTCTTCAGATTTTGGAATGTTTGCATATGCAGAATGGGATACT  442

seq1  TTGGGAAAGGGAACCGGGTCTAAACACAACATTCACTCGTTTCGTGTAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAGGGAACCGGGTCTAAACACAACATTCACTCGTTTCGTGTAAG  492

seq1  CCCTCTGAAAGCAATATCCCGTTTCTATAATGGACCTGCTGCACTTAGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGAAAGCAATATCCCGTTTCTATAATGGACCTGCTGCACTTAGGG  542

seq1  CTGGGACCTGTCAGGACTGGAATTTTCCACTTGCAGTGTGACATCAGCGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACCTGTCAGGACTGGAATTTTCCACTTGCAGTGTGACATCAGCGC  592

seq1  TCAAACTATTACAGACTTTGGATTTTGGATTTTCCGATTAGTGAGCCTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTATTACAGACTTTGGATTTTGGATTTTCCGATTAGTGAGCCTAT  642

seq1  AGTCTCACCTGCATCAAACCTGCTTTCCCAGGTTGTAGCAACCTCATGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACCTGCATCAAACCTGCTTTCCCAGGTTGTAGCAACCTCATGCC  692

seq1  CTGACTTCTGGCTCCACCTCAAATCAATTCCAGACCATTGGACAAGCTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCTGGCTCCACCTCAAATCAATTCCAGACCATTGGACAAGCTAA  742

seq1  TCCGTGTAGACCTCAGGTGTGTTTCCTATGCACTTCTCCGTACAAAACAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGTAGACCTCAGGTGTGTTTCCTATGCACTTCTCCGTACAAAACAC  792

seq1  ACCCAGAAAGAGGGGTTTGCATCGTCTGAAAGGATTGAATCCAGCCATGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAAGAGGGGTTTGCATCGTCTGAAAGGATTGAATCCAGCCATGG  842

seq1  GAGATCTCCCTGCAGCTAATTACTATTCAGTGACAGTGTGGTTTTCTCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTCCCTGCAGCTAATTACTATTCAGTGACAGTGTGGTTTTCTCTC  892

seq1  AGGGTCAGGTCGTGTGAGTCCAATTCATTAAAAGCATTTTATTACATTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCAGGTCGTGTGAGTCCAATTCATTAAAAGCATTTTATTACATTTA  942

seq1  TTCACTTATTGTTTGGGGATGGGAGGGGGTGTGTTGTACCCACACGTGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTATTGTTTGGGGATGGGAGGGGGTGTGTTGTACCCACACGTGCA  992

seq1  GTGTGTGTTCAGAGGTCAGAGGAGAAGTTTCACGAGTCATATCCCAGGGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTTCAGAGGTCAGAGGAGAAGTTTCACGAGTCATATCCCAGGGA  1042

seq1  TTGAATTC  1055
      ||||||||
seq2  TTGAATTC  1050

seq1: chr8_96888325_96888674
seq2: B6Ng01-009L10.g_76_425

seq1  TTCGGGTTTTTGTTGTTGTTGTTTCAAGACAGAGTTTCTCTGTGTAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGTTTTTGTTGTTGTTGTTTCAAGACAGAGTTTCTCTGTGTAGCCC  50

seq1  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCCTCGAACTCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGCCTCGAACTCAGAA  100

seq1  ATCTGCCTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGTGTACGCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGTGTACGCCACT  150

seq1  ACTGTCCGGCTAGAATTCTTAAGATGGTAGAAAAGTCACTTTCTTATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCGGCTAGAATTCTTAAGATGGTAGAAAAGTCACTTTCTTATCTG  200

seq1  CACAGCCAAACATGACTGAACAGCATTCTAGGATATCCTGTTACTTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCAAACATGACTGAACAGCATTCTAGGATATCCTGTTACTTGCAT  250

seq1  CGTGTTTTACAGCTAGGACAAAAGGCCCCTGAGAAACCATGCTGGAATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTTACAGCTAGGACAAAAGGCCCCTGAGAAACCATGCTGGAATCG  300

seq1  TCCCTGACATCCTTCATGGGGCGGGGGTGGTGGCGGTGGTGGTGATGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGACATCCTTCATGGGGCGGGGGTGGTGGCGGTGGTGGTGATGGTG  350