BAC Information

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BAC

Clone NameB6Ng01-009M05
Chromosome8 (Build37)
Map Location 41,401,294 - 41,552,337
singlet/doubletdoublet
Overlap gene2900075B16Rik, Zdhhc2
Upstream geneEG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166, Fgf20
Downstream geneCnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009M05.bB6Ng01-009M05.g
ACCDH845619DH845620
length1,0571,161
definitionDH845619|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M05, 5' end.DH845620|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,401,294 - 41,402,362)(41,551,149 - 41,552,337)
sequence
gaattcagtttaccccctgtattctatgatgtatggatgtagactcttgc
tgctgcattatttatttgataggcagtaggcatgcttatacagtagtagt
agtatttgcttgcaagttctttttttcaattggaaaagtaaacccatgtt
tttcatattccaaattctcatttaaacagctcagtgctcaaacttcttcc
ctaaaatttggaatataaaacatgttctatttcctgtcctgaatattcca
ggttgaatatgtatgtacaagaattttaagtcattctattgttttctact
ttttcattatcacgatatgtgtgtagttgatacagtgtattgactaagat
cttcgtagtattttgttctctagaaaggttgaggtagaaggtacttgcac
caattcaatttaagatagcttcaccctattacaagttattatacttaggc
atggtcacctaaacttttcctatgctcttacacatctgacaatgacatgg
gacttgtctttgtcatgtgaacacagttcttagtagattaagaaagagtg
aaacagggcctatcctaaatgtggaacaattattttatgcaaatttatac
aacattattaaaatcctctatgtggtaaacataaataaataaatttctct
ttttcatgatatgatcagaatccagttcaagtataatagggtcctacatg
taataagtaaaacttaaaaatatttagaggaatatgtcgtttatttgttt
gtttatttatttgtttgtttgttgttttttgttttttcgagacagagttt
ctctgtatagccctgactgtcctggaactcactctgtagaccaggctgac
ctcgaactcagaaattcgcctgcctctgcttcccaagtgctgggattaaa
ggcatgtgctaccatgcccagcagaggatatgtcttactgatttttaaac
aaagtaaaacccagaaggggaatacacaaagattttgtatagcagaaatg
taccacagattcgacgaacagtgtgcgaagtgtataatgagggctataga
ctgataa
gaattcagattatcagcctttgtgacttttaccattgacctacccttcca
gcccagcttataggtcttctgactataaatgggtggacggactaaataat
attgaaatatttaaatctatgtttttaaacaaaatgtaagtgtatttata
ctcaataacctcttaaagtaaaaaaaaaaaaaacatttttaacttcattg
aaacttttgtctcatcataatttttccagttgacccaagaatgtacttta
tagccagcttgtccaaacaaaaatccaatcccaaaacagatacatctggt
tatgtctactttgcatatctgtggtccaaaaagacattagaattgcccac
ggtcatataacaaatgaagatgtggaatgtctgtgaggctattaatgttc
ttgtcacaaccctgaaaaacaggttctaaaatcataactttaggatatga
atacatttagaagtataaagattttgcccatcattttggagacagaatct
aacatgcgaggtcggatactaagaaacatgctgcttgctatgcgacctta
ggtctttgttgatcctggatgttgatgtttaaaaaaaaaggtcttcatta
gacagggtcttgcctacacagccttgctatctctcaatcagggtggtgct
ttgtttctggtcattttccatcacactgaggtaaccattgttccaacagg
cagcgtttcccacaatcctttcatacctgtgaagtcggttataatgctac
cctcacctctaatttggtaataccttttttactttttttttggtagctaa
gcctcatcaaattagttatattaaaaatgacagttattggcttcatttct
tttctataacttcctttactattatcttccgtcttcactgtctcctcccc
tctgctggattaagtttattctcttctctttactggttcctcacatatat
acatagtacagtttagatgtttcttcattatatatggacaccttggaggt
gtgcctttccctctgagcctgtactagctggattttttttgttttgttgc
acacttgaccgaattagatcttgcactataggacctcctttgagaaatgt
ctcattagaatgatcggtggcatttctcaatagtgatcagaggaaggcca
ttgggtgctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_41401294_41402362
seq2: B6Ng01-009M05.b_41_1097

seq1  GAATTCAGTTTACCCCCTGTATTCTATGATGTATGGATGTAGACTCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTACCCCCTGTATTCTATGATGTATGGATGTAGACTCTTGC  50

seq1  TGCTGCATTATTTATTTGATAGGCAGTAGGCATGCTTATACAGTAGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATTATTTATTTGATAGGCAGTAGGCATGCTTATACAGTAGTAGT  100

seq1  AGTATTTGCTTGCAAGTTCTTTTTTTCAATTGGAAAAGTAAACCCATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGCTTGCAAGTTCTTTTTTTCAATTGGAAAAGTAAACCCATGTT  150

seq1  TTTCATATTCCAAATTCTCATTTAAACAGCTCAGTGCTCAAACTTCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATTCCAAATTCTCATTTAAACAGCTCAGTGCTCAAACTTCTTCC  200

seq1  CTAAAATTTGGAATATAAAACATGTTCTATTTCCTGTCCTGAATATTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTTGGAATATAAAACATGTTCTATTTCCTGTCCTGAATATTCCA  250

seq1  GGTTGAATATGTATGTACAAGAATTTTAAGTCATTCTATTGTTTTCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAATATGTATGTACAAGAATTTTAAGTCATTCTATTGTTTTCTACT  300

seq1  TTTTCATTATCACGATATGTGTGTAGTTGATACAGTGTATTGACTAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTATCACGATATGTGTGTAGTTGATACAGTGTATTGACTAAGAT  350

seq1  CTTCGTAGTATTTTGTTCTCTAGAAAGGTTGAGGTAGAAGGTACTTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTAGTATTTTGTTCTCTAGAAAGGTTGAGGTAGAAGGTACTTGCAC  400

seq1  CAATTCAATTTAAGATAGCTTCACCCTATTACAAGTTATTATACTTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAATTTAAGATAGCTTCACCCTATTACAAGTTATTATACTTAGGC  450

seq1  ATGGTCACCTAAACTTTTCCTATGCTCTTACACATCTGACAATGACATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCACCTAAACTTTTCCTATGCTCTTACACATCTGACAATGACATGG  500

seq1  GACTTGTCTTTGTCATGTGAACACAGTTCTTAGTAGATTAAGAAAGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTCTTTGTCATGTGAACACAGTTCTTAGTAGATTAAGAAAGAGTG  550

seq1  AAACAGGGCCTATCCTAAATGTGGAACAATTATTTTATGCAAATTTATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGCCTATCCTAAATGTGGAACAATTATTTTATGCAAATTTATAC  600

seq1  AACATTATTAAAATCCTCTATGTGGTAAACATAAATAAATAAATTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATTAAAATCCTCTATGTGGTAAACATAAATAAATAAATTTCTCT  650

seq1  TTTTCATGATATGATCAGAATCCAGTTCAAGTATAATAGGGTCCTACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGATATGATCAGAATCCAGTTCAAGTATAATAGGGTCCTACATG  700

seq1  TAATAAGTAAAACTTAAAAATATTTAGAGGAATATGTCGTTTATTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTAAAACTTAAAAATATTTAGAGGAATATGTCGTTTATTTGTTT  750

seq1  GTTTATTTATTTGTTTGTTTGTTGTTTTTTGTTTTTTCGAGACAGAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTATTTGTTTGTTTGTTGTTTTTTGTTTTTTCGAGACAGAGTTT  800

seq1  CTCTGTATAGCCCTGACTGTCCTGGAACTCACTCTGTAGACCAGGCTGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTATAGCCCTGACTGTCCTGGAACTCACTCTGTAGACCAGGCTGAC  850

seq1  CTCGAACTCAGAAATTCGCCTGCCTCTGCTTCCCAAGTGCTGGGATTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAACTCAGAAATTCGCCTGCCTCTGCTTCCCAAGTGCTGGGATTAAA  900

seq1  GGCATGTGCTACCATGCCCAGCAGAGGAATATGTCTTACTGATTTTTAAA  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGCATGTGCTACCATGCCCAGCAGAGG-ATATGTCTTACTGATTTTTAAA  949

seq1  ACAAAAGTAAAACCCAGAAGGGGAAATACACAAAGAATTTTGGAATAGCA  1000
         |||||||||||||||||||| ||||||||||||  ||| | ||||||
seq2  --CAAAGTAAAACCCAGAAGGGG-AATACACAAAGA--TTTTGTATAGCA  994

seq1  GAAAATGTACCACAGGATTCAGACAGAACAAGTGTGCAGAGTGTATAATG  1050
      | |||||||||||| ||||| ||| |||| |||||||  |||||||||||
seq2  G-AAATGTACCACA-GATTC-GAC-GAAC-AGTGTGCGAAGTGTATAATG  1039

seq1  AGGGGCTATAGACTGATAA  1069
      | |||||||||||||||||
seq2  A-GGGCTATAGACTGATAA  1057

seq1: chr8_41551149_41552337
seq2: B6Ng01-009M05.g_69_1229 (reverse)

seq1  TCAGCACCCACAATGGGCCCTCCCCTCTTGATCACTAATTGAGAAAATGC  50
      ||||||||  |||| |||| ||| |   |||||||| |||||| ||||||
seq2  TCAGCACC--CAAT-GGCCTTCCTC---TGATCACT-ATTGAG-AAATGC  42

seq1  CTTACAGCTAGATCTCATGGAGACATTTCCTCAAGGGGGGCTCCTTTCTC  100
      |  || | |   ||| || ||||||||| ||||| || || |||| |   
seq2  C--ACCGATCATTCTAAT-GAGACATTT-CTCAAAGGAGG-TCCTAT---  84

seq1  TGT-CATGATTCTAACTCGTGTCAAGTTGGCACAAAAACAAAATAAAATC  149
       || || || ||||| ||| |||||||  |||  ||||||||| ||||||
seq2  AGTGCAAGA-TCTAATTCG-GTCAAGTGTGCAACAAAACAAAA-AAAATC  131

seq1  CAGCTAGTACAAGGCCTCAGAGGGAAAGGCACACCTCCAA-GTGTCCATA  198
      |||||||||||  | ||||||||||||||||||||||||| |||||||||
seq2  CAGCTAGTACA--GGCTCAGAGGGAAAGGCACACCTCCAAGGTGTCCATA  179

seq1  TTATAAATGAAGAAACATCTTAAACTGGTAACTATGTATATATTGTGAGG  248
       ||| |||||||||||||| |||||||   |||||||||||| |||||||
seq2  -TAT-AATGAAGAAACATC-TAAACTG--TACTATGTATATA-TGTGAGG  223

seq1  AACCAGTAAAAGGAGAAGAGAATAAACTTAAATCCAGCAGAGGGGAGGAG  298
      ||||||||||  ||||||||||||||||| ||||||||||||||||||||
seq2  AACCAGTAAA--GAGAAGAGAATAAACTT-AATCCAGCAGAGGGGAGGAG  270

seq1  ACAGTGAAGACGGAAGATAATAGTAAAGGAAGTTATAGAAAAGAAATGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAGACGGAAGATAATAGTAAAGGAAGTTATAGAAAAGAAATGAA  320

seq1  GCCAATAACTGTCATTTTTAATATAACTAATTTGATGAGGCTTAGCTACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAACTGTCATTTTTAATATAACTAATTTGATGAGGCTTAGCTACC  370

seq1  AAAAAAAAAGTAAAAAAGGTATTACCAAATTAGAGGTGAGGGTAGCATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGTAAAAAAGGTATTACCAAATTAGAGGTGAGGGTAGCATTA  420

seq1  TAACCGACTTCACAGGTATGAAAGGATTGTGGGAAACGCTGCCTGTTGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCGACTTCACAGGTATGAAAGGATTGTGGGAAACGCTGCCTGTTGGA  470

seq1  ACAATGGTTACCTCAGTGTGATGGAAAATGACCAGAAACAAAGCACCACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGTTACCTCAGTGTGATGGAAAATGACCAGAAACAAAGCACCACC  520

seq1  CTGATTGAGAGATAGCAAGGCTGTGTAGGCAAGACCCTGTCTAATGAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGAGAGATAGCAAGGCTGTGTAGGCAAGACCCTGTCTAATGAAGA  570

seq1  CCTTTTTTTTTAAACATCAACATCCAGGATCAACAAAGACCTAAGGTCGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTTTAAACATCAACATCCAGGATCAACAAAGACCTAAGGTCGC  620

seq1  ATAGCAAGCAGCATGTTTCTTAGTATCCGACCTCGCATGTTAGATTCTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGCAGCATGTTTCTTAGTATCCGACCTCGCATGTTAGATTCTGT  670

seq1  CTCCAAAATGATGGGCAAAATCTTTATACTTCTAAATGTATTCATATCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAATGATGGGCAAAATCTTTATACTTCTAAATGTATTCATATCCT  720

seq1  AAAGTTATGATTTTAGAACCTGTTTTTCAGGGTTGTGACAAGAACATTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATGATTTTAGAACCTGTTTTTCAGGGTTGTGACAAGAACATTAA  770

seq1  TAGCCTCACAGACATTCCACATCTTCATTTGTTATATGACCGTGGGCAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCACAGACATTCCACATCTTCATTTGTTATATGACCGTGGGCAAT  820

seq1  TCTAATGTCTTTTTGGACCACAGATATGCAAAGTAGACATAACCAGATGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTCTTTTTGGACCACAGATATGCAAAGTAGACATAACCAGATGT  870

seq1  ATCTGTTTTGGGATTGGATTTTTGTTTGGACAAGCTGGCTATAAAGTACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTTGGGATTGGATTTTTGTTTGGACAAGCTGGCTATAAAGTACA  920

seq1  TTCTTGGGTCAACTGGAAAAATTATGATGAGACAAAAGTTTCAATGAAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGTCAACTGGAAAAATTATGATGAGACAAAAGTTTCAATGAAGT  970

seq1  TAAAAATGTTTTTTTTTTTTTTACTTTAAGAGGTTATTGAGTATAAATAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTTTTTTTTTTTTTTACTTTAAGAGGTTATTGAGTATAAATAC  1020

seq1  ACTTACATTTTGTTTAAAAACATAGATTTAAATATTTCAATATTATTTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACATTTTGTTTAAAAACATAGATTTAAATATTTCAATATTATTTAG  1070

seq1  TCCGTCCACCCATTTATAGTCAGAAGACCTATAAGCTGGGCTGGAAGGGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCCACCCATTTATAGTCAGAAGACCTATAAGCTGGGCTGGAAGGGT  1120

seq1  AGGTCAATGGTAAAAGTCACAAAGGCTGATAATCTGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAATGGTAAAAGTCACAAAGGCTGATAATCTGAATTC  1161