BAC Information

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BAC

Clone NameB6Ng01-009M07
Chromosome8 (Build37)
Map Location 41,401,294 - 41,552,337
singlet/doubletdoublet
Overlap gene2900075B16Rik, Zdhhc2
Upstream geneEG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166, Fgf20
Downstream geneCnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009M07.bB6Ng01-009M07.g
ACCDH845623DH845624
length1,0161,093
definitionDH845623|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M07, 5' end.DH845624|Mus musculus domesticus DNA, BAC clone: B6Ng01-009M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,401,294 - 41,402,320)(41,551,225 - 41,552,337)
sequence
gaattcagtttaccccctgtattctatgatgtatggatgtagactcttgc
tgctgcattatttatttgataggcagtaggcatgcttatacagtagtagt
agtatttgcttgcaagttctttttttcaattggaaaagtaaacccatgtt
tttcatattccaaattctcatttaaacagctcagtgctcaaacttcttcc
ctaaaatttggaatataaaacatgttctatttcctgtcctgaatattcca
ggttgaatatgtatgtacaagaattttaagtcattctattgttttctact
ttttcattatcacgatatgtgtgtagttgatacagtgtattgactaagat
cttcgtagtattttgttctctagaaaggttgaggtagaaggtacttgcac
caattcaatttaagatagcttcaccctattacaagttattatacttaggc
atggtcacctaaacttttcctatgctcttacacatctgacaatgacatgg
gacttgtctttgtcatgtgaacacagttcttagtagattaagaaagagtg
aaacagggcctatcctaaatgtggaacaattattttatgcaaatttatac
aacattattaaaatcctctatgtggtaaacataaataaataaatttctct
ttttcatgatatgatcagaatccagttcaagtataatagggtcctacatg
taataagtaaaacttaaaaatatttagaggaatatgtcgtttatttgttt
gtttatttatttgtttgtttgttgtttttttgttttttcgagacagagtt
tctctgtatagccctgactgtcctggaactcactctgtagaccagctgac
ctcgaactcagaaattcgcctgcctctgcttcccaagtgctgggattaag
gcatgtgctacatgtccagcagagaatatgtcttactgattttaaatcaa
agtaaacccaaaagggaattcacaaagaattttggatagcagaaatgtat
ccaagattcagacaga
gaattctgattatcagcctttgtgacttttaccattgacctacccttcca
gcccagcttataggtcttctgactataaatgggtggacggactaaataat
attgaaatatttaaatctatgtttttaaacaaaatgtaagtgtatttata
ctcaataacctcttaaagtaaaaaaaaaaaaaacatttttaacttcattg
aaacttttgtctcatcataatttttccagttgacccaagaatgtacttta
tagccagcttgtccaaacaaaaatccaatcccaaaacagatacatctggt
tatgtctactttgcatatctgtggtccaaaaagacattagaattgcccac
ggtcatataacaaatgaagatgtggaatgtctgtgaggctattaatgttc
ttgtcacaaccctgaaaaacaggttctaaaatcataactttaggatatga
atacatttagaagtataaagattttgcccatcattttggagacagaatct
aacatgcgaggtcggatactaagaaacatgctgcttgctatgcgacctta
ggtctttgttgatcctggatgttgatgtttaaaaaaaaaggtcttcatta
gacagggtcttgcctacacagccttgctatctctcaatcagggtggtgct
ttgtttctggtcattttccatcacactgaggtaaccattgttccaacagg
cagcgtttcccacaatcctttcatacctgtgaagtcggttataatgctac
cctcacctctaatttggtaataccttttttactttttttttggtagttaa
gcctcatcaaattagttatataaaaatggacagttattggcttcatttct
tttctataacttcctttactataatcttccgtcttcactgtctcctcccc
ttctgctgattaagtttattctctttctctttactggtcctcacaattaa
tacatagttacaagttagatgtttcttcattaaaaatggacacttggagg
tggcctttcctcggagccttgtactactgaattaacttggttttgtgcca
ctttgacagtagaaacatgaacaaaaagaatccccttgaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_41401294_41402320
seq2: B6Ng01-009M07.b_48_1063

seq1  GAATTCAGTTTACCCCCTGTATTCTATGATGTATGGATGTAGACTCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTACCCCCTGTATTCTATGATGTATGGATGTAGACTCTTGC  50

seq1  TGCTGCATTATTTATTTGATAGGCAGTAGGCATGCTTATACAGTAGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATTATTTATTTGATAGGCAGTAGGCATGCTTATACAGTAGTAGT  100

seq1  AGTATTTGCTTGCAAGTTCTTTTTTTCAATTGGAAAAGTAAACCCATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGCTTGCAAGTTCTTTTTTTCAATTGGAAAAGTAAACCCATGTT  150

seq1  TTTCATATTCCAAATTCTCATTTAAACAGCTCAGTGCTCAAACTTCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATTCCAAATTCTCATTTAAACAGCTCAGTGCTCAAACTTCTTCC  200

seq1  CTAAAATTTGGAATATAAAACATGTTCTATTTCCTGTCCTGAATATTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTTGGAATATAAAACATGTTCTATTTCCTGTCCTGAATATTCCA  250

seq1  GGTTGAATATGTATGTACAAGAATTTTAAGTCATTCTATTGTTTTCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAATATGTATGTACAAGAATTTTAAGTCATTCTATTGTTTTCTACT  300

seq1  TTTTCATTATCACGATATGTGTGTAGTTGATACAGTGTATTGACTAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTATCACGATATGTGTGTAGTTGATACAGTGTATTGACTAAGAT  350

seq1  CTTCGTAGTATTTTGTTCTCTAGAAAGGTTGAGGTAGAAGGTACTTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTAGTATTTTGTTCTCTAGAAAGGTTGAGGTAGAAGGTACTTGCAC  400

seq1  CAATTCAATTTAAGATAGCTTCACCCTATTACAAGTTATTATACTTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAATTTAAGATAGCTTCACCCTATTACAAGTTATTATACTTAGGC  450

seq1  ATGGTCACCTAAACTTTTCCTATGCTCTTACACATCTGACAATGACATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCACCTAAACTTTTCCTATGCTCTTACACATCTGACAATGACATGG  500

seq1  GACTTGTCTTTGTCATGTGAACACAGTTCTTAGTAGATTAAGAAAGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTCTTTGTCATGTGAACACAGTTCTTAGTAGATTAAGAAAGAGTG  550

seq1  AAACAGGGCCTATCCTAAATGTGGAACAATTATTTTATGCAAATTTATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGCCTATCCTAAATGTGGAACAATTATTTTATGCAAATTTATAC  600

seq1  AACATTATTAAAATCCTCTATGTGGTAAACATAAATAAATAAATTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATTAAAATCCTCTATGTGGTAAACATAAATAAATAAATTTCTCT  650

seq1  TTTTCATGATATGATCAGAATCCAGTTCAAGTATAATAGGGTCCTACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGATATGATCAGAATCCAGTTCAAGTATAATAGGGTCCTACATG  700

seq1  TAATAAGTAAAACTTAAAAATATTTAGAGGAATATGTCGTTTATTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTAAAACTTAAAAATATTTAGAGGAATATGTCGTTTATTTGTTT  750

seq1  GTTTATTTATTTGTTTGTTTGTTG-TTTTTTGTTTTTTCGAGACAGAGTT  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTTATTTATTTGTTTGTTTGTTGTTTTTTTGTTTTTTCGAGACAGAGTT  800

seq1  TCTCTGTATAGCCCTGACTGTCCTGGAACTCACTCTGTAGACCAGGCTGA  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTCTGTATAGCCCTGACTGTCCTGGAACTCACTCTGTAGACCA-GCTGA  849

seq1  CCTCGAACTCAGAAATTCGCCTGCCTCTGCTTCCCAAGTGCTGGGATTAA  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCTCGAACTCAGAAATTCGCCTGCCTCTGCTTCCCAAGTGCTGGGATT-A  898

seq1  AGGCATGTGCTACCATGCCCAGCAGAGGAATATGTCTTACTGATTTTTAA  949
      |||||||||||| |||| |||||||| ||||||||||||||||||||  |
seq2  AGGCATGTGCTA-CATGTCCAGCAGA-GAATATGTCTTACTGATTTT--A  944

seq1  AACAAAAGTAAAACCCAGAAGGGGAAATACACAAAGAATTTTGGAATAGC  999
      ||  ||||| ||||||| |||||  ||| ||||||||||||||| |||||
seq2  AATCAAAGT-AAACCCAAAAGGG--AATTCACAAAGAATTTTGG-ATAGC  990

seq1  AGAAAATGTACCACAGGATTCAGACAGA  1027
      || ||||||| | || ||||||||||||
seq2  AG-AAATGTATC-CAAGATTCAGACAGA  1016

seq1: chr8_41551225_41552337
seq2: B6Ng01-009M07.g_70_1162 (reverse)

seq1  TTCCTCAAGGGGGGCTCCTTTCTCTGTCATGATTCTAACTCGTGTCAAGT  50
      ||||||||  |||| | |||| | | ||||| |||||     ||||||  
seq2  TTCCTCAA--GGGGATTCTTTTTGT-TCATGTTTCTA----CTGTCAAAG  43

seq1  TGGCACAAAAACAAAATAAAATCCAGCTAGTACAAGGCCTCAGAGGGAAA  100
      |||||||||| |||  |  ||| ||| |||||||||| ||| || |||||
seq2  TGGCACAAAACCAAGTT--AATTCAG-TAGTACAAGG-CTCCGA-GGAAA  88

seq1  GGCACACCTCCAAGTGTCCATATTATAAATGAAGAAACATCTTAAACTGG  150
      ||| |||||||||||||||  ||| | |||||||||||||||  |||| |
seq2  GGC-CACCTCCAAGTGTCC--ATTTTTAATGAAGAAACATCT--AACTTG  133

seq1  TAACTATGTATATATTGTGAGGAACCAGTAAAAGGAGAAGAGAATAAACT  200
      |||||||||||  ||||||||| |||||||||  || |||||||||||||
seq2  TAACTATGTATTAATTGTGAGG-ACCAGTAAAGAGA-AAGAGAATAAACT  181

seq1  TAAATCCAGCAG-AGGGGAGGAGACAGTGAAGACGGAAGATAATAGTAAA  249
      |||   |||||| |||||||||||||||||||||||||||| ||||||||
seq2  TAA--TCAGCAGAAGGGGAGGAGACAGTGAAGACGGAAGATTATAGTAAA  229

seq1  GGAAGTTATAGAAAAGAAATGAAGCCAATAACTGTCATTTTTAATATAAC  299
      ||||||||||||||||||||||||||||||||||||  |||| |||||||
seq2  GGAAGTTATAGAAAAGAAATGAAGCCAATAACTGTCCATTTTTATATAAC  279

seq1  TAATTTGATGAGGCTTAGCTACCAAAAAAAAAGTAAAAAAGGTATTACCA  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAATTTGATGAGGCTTAACTACCAAAAAAAAAGTAAAAAAGGTATTACCA  329

seq1  AATTAGAGGTGAGGGTAGCATTATAACCGACTTCACAGGTATGAAAGGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAGGTGAGGGTAGCATTATAACCGACTTCACAGGTATGAAAGGAT  379

seq1  TGTGGGAAACGCTGCCTGTTGGAACAATGGTTACCTCAGTGTGATGGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAACGCTGCCTGTTGGAACAATGGTTACCTCAGTGTGATGGAAA  429

seq1  ATGACCAGAAACAAAGCACCACCCTGATTGAGAGATAGCAAGGCTGTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAGAAACAAAGCACCACCCTGATTGAGAGATAGCAAGGCTGTGTA  479

seq1  GGCAAGACCCTGTCTAATGAAGACCTTTTTTTTTAAACATCAACATCCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGACCCTGTCTAATGAAGACCTTTTTTTTTAAACATCAACATCCAG  529

seq1  GATCAACAAAGACCTAAGGTCGCATAGCAAGCAGCATGTTTCTTAGTATC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACAAAGACCTAAGGTCGCATAGCAAGCAGCATGTTTCTTAGTATC  579

seq1  CGACCTCGCATGTTAGATTCTGTCTCCAAAATGATGGGCAAAATCTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTCGCATGTTAGATTCTGTCTCCAAAATGATGGGCAAAATCTTTAT  629

seq1  ACTTCTAAATGTATTCATATCCTAAAGTTATGATTTTAGAACCTGTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAAATGTATTCATATCCTAAAGTTATGATTTTAGAACCTGTTTTT  679

seq1  CAGGGTTGTGACAAGAACATTAATAGCCTCACAGACATTCCACATCTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGTGACAAGAACATTAATAGCCTCACAGACATTCCACATCTTCA  729

seq1  TTTGTTATATGACCGTGGGCAATTCTAATGTCTTTTTGGACCACAGATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATATGACCGTGGGCAATTCTAATGTCTTTTTGGACCACAGATAT  779

seq1  GCAAAGTAGACATAACCAGATGTATCTGTTTTGGGATTGGATTTTTGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTAGACATAACCAGATGTATCTGTTTTGGGATTGGATTTTTGTTT  829

seq1  GGACAAGCTGGCTATAAAGTACATTCTTGGGTCAACTGGAAAAATTATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGCTGGCTATAAAGTACATTCTTGGGTCAACTGGAAAAATTATGA  879

seq1  TGAGACAAAAGTTTCAATGAAGTTAAAAATGTTTTTTTTTTTTTTACTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAAAAGTTTCAATGAAGTTAAAAATGTTTTTTTTTTTTTTACTTT  929

seq1  AAGAGGTTATTGAGTATAAATACACTTACATTTTGTTTAAAAACATAGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTATTGAGTATAAATACACTTACATTTTGTTTAAAAACATAGAT  979

seq1  TTAAATATTTCAATATTATTTAGTCCGTCCACCCATTTATAGTCAGAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATTTCAATATTATTTAGTCCGTCCACCCATTTATAGTCAGAAGA  1029

seq1  CCTATAAGCTGGGCTGGAAGGGTAGGTCAATGGTAAAAGTCACAAAGGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAGCTGGGCTGGAAGGGTAGGTCAATGGTAAAAGTCACAAAGGCT  1079

seq1  GATAATCTGAATTC  1113
      ||||||| ||||||
seq2  GATAATCAGAATTC  1093