BAC Information

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BAC

Clone NameB6Ng01-009O23
Chromosome8 (Build37)
Map Location 102,724,252 - 102,848,054
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009O23.bB6Ng01-009O23.g
ACCDH845745DH845746
length1,1231,000
definitionDH845745|Mus musculus domesticus DNA, BAC clone: B6Ng01-009O23, 5' end.DH845746|Mus musculus domesticus DNA, BAC clone: B6Ng01-009O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,724,252 - 102,725,387)(102,847,051 - 102,848,054)
sequence
gaattctttgcaaaaattatttagcaacttatttgatcaatgaagcagac
acgtggggcttggtgagatggctcacagttaagagcactggctgcttttt
ccaggaccaagcatccacatggtggctcccaaccatcagtaactctagtc
ccaggaatccaaagctcttttctggcttccacaagcactggatacacatg
gtatagagacatacatgcagacaaaaatactcatacacataaaacaatta
ttgaaaatattaaaaagtagataatgtttcaggaattgaatgaagatgga
aaggaactactgttcataattggtattgcaaaggtgcaaattacctattt
aactactattatctactaactctcttcctgctgattatctgccatctatc
tatgtgtacttatcaggttttagcaaatcaaataagttgaggctatgaac
tttactttgaaatacacctatcattttaaaagtttgtgtttgtgagtttt
taatccagtgaacctgttcttacctctttttctcataacaatccccatat
ttcatgaagactgatctgaacaaagcctactgaaagaactaattgcaaat
tctacctccaacatctttaagcattccaagattagccaactttcatttcc
tggtacccagccagaatgtattttcataagtttcaatcttgaacagaaac
tataaatgtgccaccttcattgtaagtaccatttttcttcctcagggtat
atattagagtcaacattggatgttctcttcatatcccagatgaaaagatc
tctgacaaattgcagatatttgcccaaatatttctatgcctttgtaacat
gggacagagaatattttttaaaggttttcaattctccaaatttcaaaatc
aagcctccttctacactgacattacatcagtggaacatagaaattgtagt
atactttatctaatgtttctgggcaataatatagtcagattaacaaatgc
atagtcttgagctttttatgtggtcaatttatttattagtatgtgaagca
tttatttattgaggtgaaaaaggtacttggaataaatgacttcggcatca
aagttcacattgcagtttatata
gaattccactcataagtatgtgataattatgtcttacaaattgtgcttca
aaaaatacatgctgggactaagcaaaaaaaaaaaaaaaaaaaaaaaaaaa
tatatatatataatttgtttgctttctgaacatactacttccagattatt
cttccccctgccaccctatgtactccactgaggacacaaagtcattctta
ggtacttgcctatataatcattagtttcattactagttaattttgctatg
tgtgtattttgatctgtttcttcctccaaatgctcccatatccctcctct
taccaaccctttcactaaataaattctccctatttactagttttaatttt
gtttagtgtcccatagagcttaatcaagctatgcaaggggtcctgagttt
ggaaaaatctatcagactttggtgagtttaccagttggatacataactga
ataccgcacccctctgtctctcccaggatctgttgccaacagctcagcag
gacatggaagggaacagctattcccttttcattttatagcttccatttat
tagagcctagtttctgtggacctagaaggaaaatcattgctgatgtgagt
ttatgtttctatatttttgtcttgaccaaaagatggtatttctcaaccac
tctctgacactctggcttttacatgcttcttaacactgaccttggataat
atggtacctctttttcgaatgtggctaatgatgaagctattgtcttgctc
tagtcaaccaagacatcagaaccagtttaagtagcttactgtcagcttat
agggtctgtcatctcataaactagatccaactactccccaatttttaacc
ctttgagcctagataagctgtaaagacttatcactatttatttatttatt
tatttatttatttatttttgtcctgggaccacatgggaaagtttgcctta
ctgagtttaccaaatgtcacaggtgaaacaacatgtatcctggtgtgttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_102724252_102725387
seq2: B6Ng01-009O23.b_50_1172

seq1  GAATTCTTTGCAAAAATTATTTAGCAACTTATTTGATCAATGAAGCAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCAAAAATTATTTAGCAACTTATTTGATCAATGAAGCAGAC  50

seq1  ACGTGGGGCTTGGTGAGATGGCTCACAGTTAAGAGCACTGGCTGCTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGGGCTTGGTGAGATGGCTCACAGTTAAGAGCACTGGCTGCTTTTT  100

seq1  CCAGGACCAAGCATCCACATGGTGGCTCCCAACCATCAGTAACTCTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACCAAGCATCCACATGGTGGCTCCCAACCATCAGTAACTCTAGTC  150

seq1  CCAGGAATCCAAAGCTCTTTTCTGGCTTCCACAAGCACTGGATACACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATCCAAAGCTCTTTTCTGGCTTCCACAAGCACTGGATACACATG  200

seq1  GTATAGAGACATACATGCAGACAAAAATACTCATACACATAAAACAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAGACATACATGCAGACAAAAATACTCATACACATAAAACAATTA  250

seq1  TTGAAAATATTAAAAAGTAGATAATGTTTCAGGAATTGAATGAAGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATATTAAAAAGTAGATAATGTTTCAGGAATTGAATGAAGATGGA  300

seq1  AAGGAACTACTGTTCATAATTGGTATTGCAAAGGTGCAAATTACCTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTACTGTTCATAATTGGTATTGCAAAGGTGCAAATTACCTATTT  350

seq1  AACTACTATTATCTACTAACTCTCTTCCTGCTGATTATCTGCCATCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTATTATCTACTAACTCTCTTCCTGCTGATTATCTGCCATCTATC  400

seq1  TATGTGTACTTATCAGGTTTTAGCAAATCAAATAAGTTGAGGCTATGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTACTTATCAGGTTTTAGCAAATCAAATAAGTTGAGGCTATGAAC  450

seq1  TTTACTTTGAAATACACCTATCATTTTAAAAGTTTGTGTTTGTGAGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTGAAATACACCTATCATTTTAAAAGTTTGTGTTTGTGAGTTTT  500

seq1  TAATCCAGTGAACCTGTTCTTACCTCTTTTTCTCATAACAATCCCCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGTGAACCTGTTCTTACCTCTTTTTCTCATAACAATCCCCATAT  550

seq1  TTCATGAAGACTGATCTGAACAAAGCCTACTGAAAGAACTAATTGCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAAGACTGATCTGAACAAAGCCTACTGAAAGAACTAATTGCAAAT  600

seq1  TCTACCTCCAACATCTTTAAGCATTCCAAGATTAGCCAACTTTCATTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCCAACATCTTTAAGCATTCCAAGATTAGCCAACTTTCATTTCC  650

seq1  TGGTACCCAGCCAGAATGTATTTTCATAAGTTTCAATCTTGAACAGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCCAGCCAGAATGTATTTTCATAAGTTTCAATCTTGAACAGAAAC  700

seq1  TATAAATGTGCCACCTTCATTGTAAGTACCA-TTTTCTTCCTCAGGGTAT  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATAAATGTGCCACCTTCATTGTAAGTACCATTTTTCTTCCTCAGGGTAT  750

seq1  ATATTAGAGTCAACATTGGATGTTCTCTTCATATCCCAGATGAAAAGATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAGTCAACATTGGATGTTCTCTTCATATCCCAGATGAAAAGATC  800

seq1  TCTGACAAATTGCAGATATTTGCCCAAATATTTCTATGCCTTTGTAACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAATTGCAGATATTTGCCCAAATATTTCTATGCCTTTGTAACAT  850

seq1  GGGACAGAGAATAATTTTTAAAGGTTTTCAATTCTCCAAATTTCAAAATC  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAGAATATTTTTTAAAGGTTTTCAATTCTCCAAATTTCAAAATC  900

seq1  AAGCCTCCTTCTACACTGACATTACATCAG-AGAACATAGAAATTGTAGT  948
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  AAGCCTCCTTCTACACTGACATTACATCAGTGGAACATAGAAATTGTAGT  950

seq1  AAACTTTATCTAA-GTTTCTGGGCAATAATATAGTCAAGATTAACAAATG  997
      | ||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  ATACTTTATCTAATGTTTCTGGGCAATAATATAGTC-AGATTAACAAATG  999

seq1  CATAGTCTTGAGCTTTTTATGTGGCCAAATTTAATTATATAGTATGTGAA  1047
      |||||||||||||||||||||||| | |||||| |||| ||||||||| |
seq2  CATAGTCTTGAGCTTTTTATGTGGTC-AATTTATTTAT-TAGTATGTG-A  1046

seq1  AGCATTTAATTTTATGAAGGTGAAAATAGGTTACTTTGGAATAAAGTGAA  1097
      ||||||||  |||||  ||||||||| ||| ||| |||||||||| || |
seq2  AGCATTTA--TTTATTGAGGTGAAAA-AGG-TAC-TTGGAATAAA-TG-A  1089

seq1  CTTCGGCATCAAAGTGTTCACATTTGCAGGTTTAATATA  1136
      |||||||||||||  ||||||| ||||||  || |||||
seq2  CTTCGGCATCAAA--GTTCACA-TTGCAG--TTTATATA  1123

seq1: chr8_102847051_102848054
seq2: B6Ng01-009O23.g_71_1070 (reverse)

seq1  AAACACAACCAGGATACATGTTGTTTCACCTGTGACATTTGGTAAACTTC  50
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  AAACAC-ACCAGGATACATGTTGTTTCACCTGTGACATTTGGTAAAC-TC  48

seq1  AGAAAGGCAAAACTTTCCCATGTGGTCCCAGGACAAAAAATAAATAAATA  100
      || ||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  AGTAAGGC-AAACTTTCCCATGTGGTCCCAGGAC-AAAAATAAATAAATA  96

seq1  AATAAATAAATAAATAAATAGTGATATGTCTTTACAGCTTATCTAGGCTC  150
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATAAATAAATAAATAAATAGTGATAAGTCTTTACAGCTTATCTAGGCTC  146

seq1  AAAGGGTTAAAAATTGGGGAGTAGTTGGATCTAGTTTATGAGATGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTTAAAAATTGGGGAGTAGTTGGATCTAGTTTATGAGATGACAGA  196

seq1  CCTTATAAGCTGACAGTAAGCTACTTAAACTGGTTCTGATGTCTTGGTTG  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAAGCTGACAGTAAGCTACTTAAACTGGTTCTGATGTCTTGGTTG  246

seq1  ACTAGAGCAAGACAATAGCTTCATCATTAGCCACATTCGAAAAAGAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGCAAGACAATAGCTTCATCATTAGCCACATTCGAAAAAGAGGTA  296

seq1  CCATATTATCCAAGGTCAGTGTTAAGAAGCATGTAAAAGCCAGAGTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTATCCAAGGTCAGTGTTAAGAAGCATGTAAAAGCCAGAGTGTCA  346

seq1  GAGAGTGGTTGAGAAATACCATCTTTTGGTCAAGACAAAAATATAGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGGTTGAGAAATACCATCTTTTGGTCAAGACAAAAATATAGAAAC  396

seq1  ATAAACTCACATCAGCAATGATTTTCCTTCTAGGTCCACAGAAACTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCACATCAGCAATGATTTTCCTTCTAGGTCCACAGAAACTAGGC  446

seq1  TCTAATAAATGGAAGCTATAAAATGAAAAGGGAATAGCTGTTCCCTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAATGGAAGCTATAAAATGAAAAGGGAATAGCTGTTCCCTTCCA  496

seq1  TGTCCTGCTGAGCTGTTGGCAACAGATCCTGGGAGAGACAGAGGGGTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGCTGAGCTGTTGGCAACAGATCCTGGGAGAGACAGAGGGGTGCG  546

seq1  GTATTCAGTTATGTATCCAACTGGTAAACTCACCAAAGTCTGATAGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGTTATGTATCCAACTGGTAAACTCACCAAAGTCTGATAGATTT  596

seq1  TTCCAAACTCAGGACCCCTTGCATAGCTTGATTAAGCTCTATGGGACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACTCAGGACCCCTTGCATAGCTTGATTAAGCTCTATGGGACACT  646

seq1  AAACAAAATTAAAACTAGTAAATAGGGAGAATTTATTTAGTGAAAGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATTAAAACTAGTAAATAGGGAGAATTTATTTAGTGAAAGGGTT  696

seq1  GGTAAGAGGAGGGATATGGGAGCATTTGGAGGAAGAAACAGATCAAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGGAGGGATATGGGAGCATTTGGAGGAAGAAACAGATCAAAATA  746

seq1  CACACATAGCAAAATTAACTAGTAATGAAACTAATGATTATATAGGCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGCAAAATTAACTAGTAATGAAACTAATGATTATATAGGCAAG  796

seq1  TACCTAAGAATGACTTTGTGTCCTCAGTGGAGTACATAGGGTGGCAGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAGAATGACTTTGTGTCCTCAGTGGAGTACATAGGGTGGCAGGGG  846

seq1  GAAGAATAATCTGGAAGTAGTATGTTCAGAAAGCAAACAAATTATATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATAATCTGGAAGTAGTATGTTCAGAAAGCAAACAAATTATATATA  896

seq1  TATATTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTAGTCCCAGCATGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTAGTCCCAGCATGTAT  946

seq1  TTTTTGAAGCACAATTTGTAAGACATAATTATCACATACTTATGAGTGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAGCACAATTTGTAAGACATAATTATCACATACTTATGAGTGGA  996

seq1  ATTC  1004
      ||||
seq2  ATTC  1000