BAC Information

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BAC

Clone NameB6Ng01-009P20
Chromosome8 (Build37)
Map Location 86,268,996 - 86,380,577
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97
Downstream geneEG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009P20.bB6Ng01-009P20.g
ACCDH845787DH845788
length1,1041,084
definitionDH845787|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P20, 5' end.DH845788|Mus musculus domesticus DNA, BAC clone: B6Ng01-009P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,379,475 - 86,380,577)(86,268,996 - 86,270,080)
sequence
gaattctttgtggtatttctattaaccagagttcaaaccagagacaagca
ggcccaagatggagtcagcttacagatcagagtttcctctgttgccagtg
ttcttttcttcgccacactgcttttgaacatgttattttatcacacgcat
agaaaccccaatgaaaccatcaacatttgtgttatggggtctgttgctgt
gatagagaccatgactaaagcaacttggatagagtaacaggaggttacat
ccacctggcctttttgttccctgaaataataaccctgagactgcaggggg
tgtgggggagcagtgtacaggaaaaagtgggagagcgagcgaggtgccac
agatccctgcgactcctcagagtcctgatctgccgtacatggcattagag
ccaagatgactcctgaacactggtgagacagcaaaaaggaaccgaggata
gggaggtgactacttccccaggcttcaaagaaatcctaaggggtggcgat
attccctgcccctgctccttctcagttacttcatcaggcagggctttcat
tggggcatgatgatggtgtggcaagatacgattggctgggggtttagggg
catggattggcttgaatgctgtatataggcttatgcactgctcaataaac
tcagatctgcaccctgatgctggtcttcggagtttgattcatcttgtgac
tcggtcgtctcttctccccacccctcatcctcagtcctgtttccacatga
gacttctcatatgtgaatatagggccaatagctttggctcattcccctga
caaactcataaacttaaatgcccatttaattctagtctatatctcccata
tgtggttggttacgtctcctcaggtttatgtgaccgaccatctactttca
gcgtttctagggccaagctctctgcttattctatgagtgccacatggctg
ggttaccttctactcagtttcatgcatctgtcttctcagaagtctgggcg
aatctctctcacacctggattttatccagaaccttctctccctaactgga
acttcacctccgtcttctgctcgctcatggccaaggcttttaattgacca
ggtg
gaattccaggccaaccagggttatagacggagtgggtttcatacaaaata
aataggctggagagatggcaccgcggttaagagcacttgctgctcttcca
gaagacctgggtttgcttcccagcacccacatggtggctcacaaatatct
gtgactcctgttccaggggacccaataccttcttctgacctccctaggca
ccaggcaggcatgtggtgcacagacatatacacaggccaacacacatata
cataaaataaagataaaactttaaaaacaaaacaggaaaaaaaatctgat
ttctgtagtgagaattctggaatttggtttctttaaaaacacaggaatat
tgtaagagtatacttttgttttaatcccaggggtgagatgcagggctgct
tctgactgtccacagcagctgactatgcacacctgaggcaccacacgacc
tgactggcctggaactcactgcgtagatcgggctggccttaaactcactg
agatttgtctttctcctgcctgctgaaattaaagttgtgcgtcaccctgc
ttggtgagtctttaatcacattactgatgttgtcacaggtcttacagagg
ttatctggcacttactgggtacctggcttgtgttctgttggtggtgtgcg
ttttctcggcactagggaagactttcaggctctgaagcatgcctgcaaat
gctcaccactgaccccggtccctagcccctgggagggtctgctctcaggg
tgttacacaggtgaataactccaaaggccctctgctcttggtttaggctt
gaatatcaatgaagcttccacgcctttagttaaggactgtctacctcagg
tctccctggcttgaaccagcagttctccctggctacttgcttttttcatt
ttcttttcctatgcagcatgcatgtatgcgtgcgctcacacttgtgcatg
tgtgcgagcctgcttgttcatgctggtgtggatgccttgtgctgcttcaa
ccctttttatattatttctgagacaggtcctcttcctggttctgaaactc
actcactgggtaagacatcaagccctgaagatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86379475_86380577
seq2: B6Ng01-009P20.b_49_1152 (reverse)

seq1  CACCT-GTCAATAAAAAAGCCTATGGCCAATGAGCTGAGGCAGAAGACGG  49
      ||||| ||||||  |||||||| ||||| |||||| || ||||||||| |
seq2  CACCTGGTCAAT-TAAAAGCCT-TGGCC-ATGAGC-GA-GCAGAAGAC-G  44

seq1  GAGGTGGAAGTTCCAG-TAGGGAGAGAAGGTTCTGGGATAAAGT-CAGGT  97
      ||||| |||||||||| ||||||||||||||||| ||||||| | |||||
seq2  GAGGT-GAAGTTCCAGTTAGGGAGAGAAGGTTCT-GGATAAAATCCAGGT  92

seq1  GTGAGAGAGATTCGCCCAGAACTCTGGAGAAGACAGATGCATGAAACTGA  147
      ||||||||||||||||||||  ||| ||||||||||||||||||||||||
seq2  GTGAGAGAGATTCGCCCAGACTTCT-GAGAAGACAGATGCATGAAACTGA  141

seq1  GTAGAGGGTAA-CCAGCCATGTGGCACTCATAGAATAAGCAGAGAGCTTG  196
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAGGTAACCCAGCCATGTGGCACTCATAGAATAAGCAGAGAGCTTG  191

seq1  GCCCT-GGAACGCTG-AAGTAGATGGTCGGTCACATAAACCTGAGGAGAC  244
      ||||| | ||||||| ||||||||||||||||||||||||||||||||||
seq2  GCCCTAGAAACGCTGAAAGTAGATGGTCGGTCACATAAACCTGAGGAGAC  241

seq1  GTAACCAACCACATATGGGAGATATAGACTAGAA-TAAATGGGCATTTAA  293
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTAACCAACCACATATGGGAGATATAGACTAGAATTAAATGGGCATTTAA  291

seq1  G-TTATGAGTTTGTCA-GGGAATGAGCCAAAGCTATTGG-CCTATATTCA  340
      | |||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  GTTTATGAGTTTGTCAGGGGAATGAGCCAAAGCTATTGGCCCTATATTCA  341

seq1  CATATGAGAAGTCTCATGTGGAAACAGGACTGAGGATGAGGGGTGGGGAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAGAAGTCTCATGTGGAAACAGGACTGAGGATGAGGGGTGGGGAG  391

seq1  AAGAGACGACCGAGTCACAAGATGAATCAAACTCCGAAGACCAGCATCAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACGACCGAGTCACAAGATGAATCAAACTCCGAAGACCAGCATCAG  441

seq1  GGTGCAGATCTGAGTTTATTGAGCAGTGCATAAGCCTATATACAGCATTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGATCTGAGTTTATTGAGCAGTGCATAAGCCTATATACAGCATTC  491

seq1  AAGCCAATCCATGCCCCTAAACCCCCAGCCAATCGTATCTTGCCACACCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAATCCATGCCCCTAAACCCCCAGCCAATCGTATCTTGCCACACCA  541

seq1  TCATCATGCCCCAATGAAAGCCCTGCCTGATGAAGTAACTGAGAAGGAGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGCCCCAATGAAAGCCCTGCCTGATGAAGTAACTGAGAAGGAGC  591

seq1  AGGGGCAGGGAATATCGCCACCCCTTAGGATTTCTTTGAAGCCTGGGGAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGGGAATATCGCCACCCCTTAGGATTTCTTTGAAGCCTGGGGAA  641

seq1  GTAGTCACCTCCCTATCCTCGGTTCCTTTTTGCTGTCTCACCAGTGTTCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCACCTCCCTATCCTCGGTTCCTTTTTGCTGTCTCACCAGTGTTCA  691

seq1  GGAGTCATCTTGGCTCTAATGCCATGTACGGCAGATCAGGACTCTGAGGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCATCTTGGCTCTAATGCCATGTACGGCAGATCAGGACTCTGAGGA  741

seq1  GTCGCAGGGATCTGTGGCACCTCGCTCGCTCTCCCACTTTTTCCTGTACA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCAGGGATCTGTGGCACCTCGCTCGCTCTCCCACTTTTTCCTGTACA  791

seq1  CTGCTCCCCCACACCCCCTGCAGTCTCAGGGTTATTATTTCAGGGAACAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCCCACACCCCCTGCAGTCTCAGGGTTATTATTTCAGGGAACAA  841

seq1  AAAGGCCAGGTGGATGTAACCTCCTGTTACTCTATCCAAGTTGCTTTAGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCAGGTGGATGTAACCTCCTGTTACTCTATCCAAGTTGCTTTAGT  891

seq1  CATGGTCTCTATCACAGCAACAGACCCCATAACACAAATGTTGATGGTTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTCTATCACAGCAACAGACCCCATAACACAAATGTTGATGGTTT  941

seq1  CATTGGGGTTTCTATGCGTGTGATAAAATAACATGTTCAAAAGCAGTGTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGTTTCTATGCGTGTGATAAAATAACATGTTCAAAAGCAGTGTG  991

seq1  GCGAAGAAAAGAACACTGGCAACAGAGGAAACTCTGATCTGTAAGCTGAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGAAAAGAACACTGGCAACAGAGGAAACTCTGATCTGTAAGCTGAC  1041

seq1  TCCATCTTGGGCCTGCTTGTCTCTGGTTTGAACTCTGGTTAATAGAAATA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTGGGCCTGCTTGTCTCTGGTTTGAACTCTGGTTAATAGAAATA  1091

seq1  CCACAAAGAATTC  1103
      |||||||||||||
seq2  CCACAAAGAATTC  1104

seq1: chr8_86268996_86270080
seq2: B6Ng01-009P20.g_69_1152

seq1  GAATTCCAGGCCAACCAGGGTTATAGACGGAGTGGGTTTCATACAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAACCAGGGTTATAGACGGAGTGGGTTTCATACAAAATA  50

seq1  AATAGGCTGGAGAGATGGCACCGCGGTTAAGAGCACTTGCTGCTCTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCTGGAGAGATGGCACCGCGGTTAAGAGCACTTGCTGCTCTTCCA  100

seq1  GAAGACCTGGGTTTGCTTCCCAGCACCCACATGGTGGCTCACAAATATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCTGGGTTTGCTTCCCAGCACCCACATGGTGGCTCACAAATATCT  150

seq1  GTGACTCCTGTTCCAGGGGACCCAATACCTTCTTCTGACCTCCCTAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCCTGTTCCAGGGGACCCAATACCTTCTTCTGACCTCCCTAGGCA  200

seq1  CCAGGCAGGCATGTGGTGCACAGACATATACACAGGCCAACACACATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGGCATGTGGTGCACAGACATATACACAGGCCAACACACATATA  250

seq1  CATAAAATAAAGATAAAACTTTAAAAACAAAACAGGAAAAAAAATCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATAAAGATAAAACTTTAAAAACAAAACAGGAAAAAAAATCTGAT  300

seq1  TTCTGTAGTGAGAATTCTGGAATTTGGTTTCTTTAAAAACACAGGAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGTGAGAATTCTGGAATTTGGTTTCTTTAAAAACACAGGAATAT  350

seq1  TGTAAGAGTATACTTTTGTTTTAATCCCAGGGGTGAGATGCAGGGCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAGTATACTTTTGTTTTAATCCCAGGGGTGAGATGCAGGGCTGCT  400

seq1  TCTGACTGTCCACAGCAGCTGACTATGCACACCTGAGGCACCACACGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTGTCCACAGCAGCTGACTATGCACACCTGAGGCACCACACGACC  450

seq1  TGACTGGCCTGGAACTCACTGCGTAGATCGGGCTGGCCTTAAACTCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGCCTGGAACTCACTGCGTAGATCGGGCTGGCCTTAAACTCACTG  500

seq1  AGATTTGTCTTTCTCCTGCCTGCTGAAATTAAAGTTGTGCGTCACCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTCTTTCTCCTGCCTGCTGAAATTAAAGTTGTGCGTCACCCTGC  550

seq1  TTGGTGAGTCTTTAATCACATTACTGATGTTGTCACAGGTCTTACAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGTCTTTAATCACATTACTGATGTTGTCACAGGTCTTACAGAGG  600

seq1  TTATCTGGCACTTACTGGGTACCTGGCTTGTGTTCTGTTGGTGGTGTGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGGCACTTACTGGGTACCTGGCTTGTGTTCTGTTGGTGGTGTGCG  650

seq1  TTTTCTCGGCACTAGGGAAGACTTTCAGGCTCTGAAGCATGCCTGCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCGGCACTAGGGAAGACTTTCAGGCTCTGAAGCATGCCTGCAAAT  700

seq1  GCTCACCACTGACCCCGGTCCCTAGCCCCTGGGAGGGTCTGCTCTCAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCACTGACCCCGGTCCCTAGCCCCTGGGAGGGTCTGCTCTCAGGG  750

seq1  TGTTACACAGGTGAATAACTCCAAAGGCCCTCTGCTCTTTGGTTTAGGCT  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTACACAGGTGAATAACTCCAAAGGCCCTCTGCTC-TTGGTTTAGGCT  799

seq1  TGAATATCAATGAAGCTTCCACGCC-TTAGTT-AGGACTGTCTACC-CAG  847
      ||||||||||||||||||||||||| |||||| ||||||||||||| |||
seq2  TGAATATCAATGAAGCTTCCACGCCTTTAGTTAAGGACTGTCTACCTCAG  849

seq1  GTCTCCCTGGCTTGAACCAGCAGTTCTCCCTGGCTACTTGCTTTTTTCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTGGCTTGAACCAGCAGTTCTCCCTGGCTACTTGCTTTTTTCAT  899

seq1  TTTCTTTTTCCTATGCAGCATGCATGTATGCGTGCGCTCACACTTGTGCA  947
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTC-TTTTCCTATGCAGCATGCATGTATGCGTGCGCTCACACTTGTGCA  948

seq1  TGTGTGCGAGCCTGCCTGTTCATGCTGGTGTGGATGCCTTGTGGCTGCCT  997
      ||||||||||||||| |||||||||||||||||||||||||| ||||| |
seq2  TGTGTGCGAGCCTGCTTGTTCATGCTGGTGTGGATGCCTTGT-GCTGCTT  997

seq1  CAAACACTTTTTATATTATTTTCTGAGACAGGGTCTCTCCCTGGTTCTGA  1047
      | ||| |||||||||||| |||||||||||||  |||| |||||||||||
seq2  C-AACCCTTTTTATATTA-TTTCTGAGACAGGTCCTCTTCCTGGTTCTGA  1045

seq1  AACTCACCCACTGGGTTAGACATCAAGCCCTG-AGATCT  1085
      ||||||| |||||||| ||||||||||||||| ||||||
seq2  AACTCACTCACTGGGTAAGACATCAAGCCCTGAAGATCT  1084