BAC Information

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BAC

Clone NameB6Ng01-010L14
Chromosome8 (Build37)
Map Location 36,828,374 - 36,972,093
singlet/doubletdoublet
Overlap geneLOC100041572, Gm501, Cldn23
Upstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1
Downstream geneLOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010L14.bB6Ng01-010L14.g
ACCDH846310DH846311
length1,0001,137
definitionDH846310|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L14, 5' end.DH846311|Mus musculus domesticus DNA, BAC clone: B6Ng01-010L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,828,374 - 36,829,794)(36,970,955 - 36,972,093)
sequence
gaattctatgctttgcaaagtaaggtcagagcagcaggcacattgcttca
cctgaatgacggacatgtcccagttctgtaaaggcagaatgtctgcagag
ttttccaggtgactcctgtgcagtttaagtgtgactgactaaccctttct
atgtccctaagggtcggctcccagtgagcccagcgctctgcttctagtcc
cattagggatcggtggtgcaaagtccccagccacaatgcgaggagacctt
cctggacagaggcgggtcttgcccaggagagcaggcgcccaagatttgca
ccagcgaactccaggcacccattcagcagcctgcaaagaggcgtgggaac
tggcgcccgcccgcgtcccgcgcccctcgtctcttgctcctcccttctgg
gttgtcctcactcaggcgcccagcaggagcaagatcccgcggcccgggtc
cgggtccgtccctgctaggcatgcggtgccggatgttcttgctccctttc
tccttgatgctggtatctttgagtggcagctttggacgctcaggagcagg
tgagtgaggtccgtggtcaggggcgccctcggaagggtcgcatcgcagct
ctggtttgcagggagcaggatgtggggtgcggggtagcagtattgtacgc
gctgcgctgcagggacagaaggcgaacttcggatgccttcgctgagtgtg
cagtcctcagctgagcagtgtggcaagtaagatgtagaaggtggggctga
gcatcctgcagagacagccctggagaattcaggactgccaggccctttga
gaacctgtggataggaggagaggtagatcaaggacaacgattacttgagt
cacccagcaagtgtatgggagctctctccatcctagtccctagatcactt
atctcttagatggatgcttccgtctcgaagtcagacctggtggaatcact
ttctagcccgatttttcacagtacggttgggctgtgtggttaaggactta

gaattctggtggcaactagctagcccaggtgtcctcctgctgctgggtgt
cctgaaagcatggctgtagttgtagaacctggacaggattagctacccaa
agcagcaaccaatcccctacaagtatgggtattcatttgtttctatagca
acgtgggggatttctgtagtgtagaccatgagatgtggaggtgttgctcc
agagagggaatacaagacccattaggaagaagggaaatcctgaagctccc
acttcaccctacactggtctagaggaccaggaagaaacagaagacaggta
agaaagtgaggacagaagtcataatattcattttcattgctcccactttc
cccacctcgctagagaagagaatacttggaaagatcccaagctagaagat
ggaaagagattatctctgctttccctgccttagctttgggtactttcaag
atggcgcaagggcaatggttaggggagtggtgaacagaggtgtttaatcc
tctttgagagagtgctactgcctccctgaggcacactggtggcccaggtg
acccaaaaccaatggatacacagagacaatgaagccgaatgagggcagag
actctgaagacaaaggacatatttacagccctggcttgaagatggagtac
tttgtgggaataagcaagagaagatcaacctactaaggaagcaaaggctg
tttagttagagctcagtgtatgcagagattcagtcagcaccacttgggtt
ttgtcacaaactctgaggcaagaaaaggacccaagaatcctctgcagtgg
gaaagtggaaggccccgtgcattctctgaatagaggcagctgccctgaga
agatggcagtgagccagctcgaagaagggcattggtgatggttagttagt
gttaattatcaacttgacaagatctagatcacctagagatggcctttgaa
caatgtatgtgatgatatcttgattgtagtgttatagaagactcatctaa
attgtgtaataggacaattctctgagccagggagaacagtgagccagagc
cacttagacaggtggtgctcacgtcctttgttatcctgaaccatggggcg
cacgcccccaagtaccaagctctgtgactgctttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_36828374_36829794
seq2: B6Ng01-010L14.b_43_1042

seq1  GAATTCTATGCTTTGCAAAGTAAGGTCAGAGCAGCAGGCACATTGCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCTTTGCAAAGTAAGGTCAGAGCAGCAGGCACATTGCTTCA  50

seq1  CCTGAATGACGGACATGTCCCAGTTCTGTAAAGGCAGAATGTCTGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGACGGACATGTCCCAGTTCTGTAAAGGCAGAATGTCTGCAGAG  100

seq1  TTTTCCAGGTGACTCCTGTGCAGTTTAAGTGTGACTGACTAACCCTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGGTGACTCCTGTGCAGTTTAAGTGTGACTGACTAACCCTTTCT  150

seq1  ATGTCCCTAAGGGTCGGCTCCCAGTGAGCCCAGCGCTCTGCTTCTAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTAAGGGTCGGCTCCCAGTGAGCCCAGCGCTCTGCTTCTAGTCC  200

seq1  CATTAGGGATCGGTGGTGCAAAGTCCCCAGCCACAATGCGAGGAGACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGGATCGGTGGTGCAAAGTCCCCAGCCACAATGCGAGGAGACCTT  250

seq1  CCTGGACAGAGGCGGGTCTTGCCCAGGAGAGCAGGCGCCCAAGATTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACAGAGGCGGGTCTTGCCCAGGAGAGCAGGCGCCCAAGATTTGCA  300

seq1  CCAGCGAACTCCAGGCACCCATTCAGCAGCCTGCAAAGAGGCGTGGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGAACTCCAGGCACCCATTCAGCAGCCTGCAAAGAGGCGTGGGAAC  350

seq1  TGGCGCCCGCCCGCGTCCCGCGCCCCTCGTCTCTTGCTCCTCCCTTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCCCGCCCGCGTCCCGCGCCCCTCGTCTCTTGCTCCTCCCTTCTGG  400

seq1  GTTGTCCTCACTCAGGCGCCCAGCAGGAGCAAGATCCCGCGGCCCGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCTCACTCAGGCGCCCAGCAGGAGCAAGATCCCGCGGCCCGGGTC  450

seq1  CGGGTCCGTCCCTGCTAGGCATGCGGTGCCGGATGTTCTTGCTCCCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCCGTCCCTGCTAGGCATGCGGTGCCGGATGTTCTTGCTCCCTTTC  500

seq1  TCCTTGATGCTGGTATCTTTGAGTGGCAGCTTTGGACGCTCAGGAGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATGCTGGTATCTTTGAGTGGCAGCTTTGGACGCTCAGGAGCAGG  550

seq1  TGAGTGAGGTCCGTGGTCAGGGGCGCCCTCGGAAGGGTCGCATCGCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGGTCCGTGGTCAGGGGCGCCCTCGGAAGGGTCGCATCGCAGCT  600

seq1  CTGGTTTGCAGGGAGCAGGATGTGGGGTGCGGGGTAGCAGTATTGTACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGCAGGGAGCAGGATGTGGGGTGCGGGGTAGCAGTATTGTACGC  650

seq1  GCTGCGCTGCAGGGACAGAAGGCGAACTTCGGATGCCTTCGCTGAGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGCTGCAGGGACAGAAGGCGAACTTCGGATGCCTTCGCTGAGTGTG  700

seq1  CAGTCCTCAGCTGAGCAGTGTGGCAAGTAAGATGTAGAAGGGTGGGGCTG  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGTCCTCAGCTGAGCAGTGTGGCAAGTAAGATGTAGAA-GGTGGGGCTG  749

seq1  AGCATCCTGCAGAGACAGCCCTGGAGAATTCAGGACTGCCAGGCCCTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTGCAGAGACAGCCCTGGAGAATTCAGGACTGCCAGGCCCTTTG  799

seq1  AGAACCTGTGGATAGGAGGAGAGGTAAGATCAAGGACAAAGGATTACTTG  850
      ||||||||||||||||||||||||| ||||||||||| || |||||||| 
seq2  AGAACCTGTGGATAGGAGGAGAGGT-AGATCAAGGAC-AACGATTACTT-  846

seq1  GAGTCACCCAGCAAGTGTAAGGGAGCTCTCTCCATCCTAGTCCCTAGATC  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGTCACCCAGCAAGTGTATGGGAGCTCTCTCCATCCTAGTCCCTAGATC  896

seq1  ACCTTATCTCTTAGATGGATGCTTCCGTCCTCGAAGTCCAGACCTGGTGG  950
      | |||||||||||||||||||||||||| |||||||| |||||||||| |
seq2  A-CTTATCTCTTAGATGGATGCTTCCGT-CTCGAAGT-CAGACCTGGT-G  942

seq1  GACTCACTTTCTAGCCCCGATTTTTCTACCAGTTACGGTTGGGCTGTGTG  1000
      || ||||||||||| |||||||||||   ||| |||||||||||||||||
seq2  GAATCACTTTCTAG-CCCGATTTTTC--ACAG-TACGGTTGGGCTGTGTG  988

seq1  GTTATAGGTACTTAGTATAGCTAAGAGGTGCCATCCTTTAAAAACTGCCC  1050
      |||| ||| |||||                                    
seq2  GTTA-AGG-ACTTA------------------------------------  1000

seq1  CCTGGGAAAGAATGGTTGGGAGCACTTCCTGCTGCACCTGTTGATGCCAC  1100
                                                        
seq2  --------------------------------------------------  1000

seq1  TCCCATAGATAGATCCAAAGATGTCGTGATCTTTGACATGGGAAAGGAGG  1150
                                                        
seq2  --------------------------------------------------  1000

seq1  AGTACGACGTGCCCCAGGGTAGCTGAGACATATACAGTTGTCAGTAGGTC  1200
                                                        
seq2  --------------------------------------------------  1000

seq1  AAGTTGCTGGCTGCTGGTGTCAACAGAGGTTGTAGGTACCCAGCATTGAG  1250
                                                        
seq2  --------------------------------------------------  1000

seq1  AAACCCCTGCCTGGAGGTTAGCAATCTGGTCACTCAGGTGAGACTGTTCT  1300
                                                        
seq2  --------------------------------------------------  1000

seq1  ACCCCAACCAGGTACGGAAGGCAAGTGTGAAGCCATGTTAATCTTTGCAT  1350
                                                        
seq2  --------------------------------------------------  1000

seq1  TTTTGCTCGCGTTTAAGCCAAATTCAATCACTTTGAAGGAACCCTTCCAA  1400
                                                        
seq2  --------------------------------------------------  1000

seq1  GGCTCTGACCCTCAGGACTTA  1421
                           
seq2  ---------------------  1000

seq1: chr8_36970955_36972093
seq2: B6Ng01-010L14.g_67_1203 (reverse)

seq1  AAGAAAGGAAGTCACAAGAGCTTGGGTACTTGGTGGCGTTGCCCCCATGG  50
      |||||| | |||||| ||||||| ||||||||| |||||   ||||||||
seq2  AAGAAA-GCAGTCAC-AGAGCTT-GGTACTTGGGGGCGTGCGCCCCATGG  47

seq1  -TCAAGA-AACAAAGAGCAGTGAGCACACACATG-CTAAGT-GCTCT-GC  95
       ||| || ||||||| |  |||||||| ||| || |||||| ||||| ||
seq2  TTCAGGATAACAAAG-GACGTGAGCAC-CACCTGTCTAAGTGGCTCTGGC  95

seq1  TCACTG-TCTCCCCTGCTCAGAGAGTGGTCCTATT-CACAATTAAGATGG  143
      |||||| ||||||  ||||||||| | |||||||| ||||||| ||||| 
seq2  TCACTGTTCTCCCTGGCTCAGAGAATTGTCCTATTACACAATTTAGATGA  145

seq1  GTCTTCTATACCACTTACAATCAAGATAATCATCACATACA-TGTTCAAA  192
      |||||||||| ||| |||||||||||| ||||||||||||| ||||||||
seq2  GTCTTCTATAACAC-TACAATCAAGAT-ATCATCACATACATTGTTCAAA  193

seq1  GGCCCATCTTCTAGGTGATTCTAGATCTTGTCAAGTTGATAATTAACACT  242
      || ||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  GG-CCATC-TCTAGGTGA-TCTAGATCTTGTCAAGTTGATAATTAACACT  240

seq1  AACTAACCATCACCAATGCCCTTCTTCGAGCTGGCTCACTGCCATCTTCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAACCATCACCAATGCCCTTCTTCGAGCTGGCTCACTGCCATCTTCT  290

seq1  CAGGGCAGCTGCCTCTATTCAGAGAATGCACGGGGCCTTCCACTTTCCCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGCTGCCTCTATTCAGAGAATGCACGGGGCCTTCCACTTTCCCA  340

seq1  CTGCAGAGGATTCTTGGGTCCTTTTCTTGCCTCAGAGTTTGTGACAAAAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGGATTCTTGGGTCCTTTTCTTGCCTCAGAGTTTGTGACAAAAC  390

seq1  CCAAGTGGTGCTGACTGAATCTCTGCATACACTGAGCTCTAACTAAACAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGTGCTGACTGAATCTCTGCATACACTGAGCTCTAACTAAACAG  440

seq1  CCTTTGCTTCCTTAGTAGGTTGATCTTCTCTTGCTTATTCCCACAAAGTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTTCCTTAGTAGGTTGATCTTCTCTTGCTTATTCCCACAAAGTA  490

seq1  CTCCATCTTCAAGCCAGGGCTGTAAATATGTCCTTTGTCTTCAGAGTCTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTCAAGCCAGGGCTGTAAATATGTCCTTTGTCTTCAGAGTCTC  540

seq1  TGCCCTCATTCGGCTTCATTGTCTCTGTGTATCCATTGGTTTTGGGTCAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCATTCGGCTTCATTGTCTCTGTGTATCCATTGGTTTTGGGTCAC  590

seq1  CTGGGCCACCAGTGTGCCTCAGGGAGGCAGTAGCACTCTCTCAAAGAGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCACCAGTGTGCCTCAGGGAGGCAGTAGCACTCTCTCAAAGAGGA  640

seq1  TTAAACACCTCTGTTCACCACTCCCCTAACCATTGCCCTTGCGCCATCTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACCTCTGTTCACCACTCCCCTAACCATTGCCCTTGCGCCATCTT  690

seq1  GAAAGTACCCAAAGCTAAGGCAGGGAAAGCAGAGATAATCTCTTTCCATC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTACCCAAAGCTAAGGCAGGGAAAGCAGAGATAATCTCTTTCCATC  740

seq1  TTCTAGCTTGGGATCTTTCCAAGTATTCTCTTCTCTAGCGAGGTGGGGAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTTGGGATCTTTCCAAGTATTCTCTTCTCTAGCGAGGTGGGGAA  790

seq1  AGTGGGAGCAATGAAAATGAATATTATGACTTCTGTCCTCACTTTCTTAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGCAATGAAAATGAATATTATGACTTCTGTCCTCACTTTCTTAC  840

seq1  CTGTCTTCTGTTTCTTCCTGGTCCTCTAGACCAGTGTAGGGTGAAGTGGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCTGTTTCTTCCTGGTCCTCTAGACCAGTGTAGGGTGAAGTGGG  890

seq1  AGCTTCAGGATTTCCCTTCTTCCTAATGGGTCTTGTATTCCCTCTCTGGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAGGATTTCCCTTCTTCCTAATGGGTCTTGTATTCCCTCTCTGGA  940

seq1  GCAACACCTCCACATCTCATGGTCTACACTACAGAAATCCCCCACGTTGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACCTCCACATCTCATGGTCTACACTACAGAAATCCCCCACGTTGC  990

seq1  TATAGAAACAAATGAATACCCATACTTGTAGGGGATTGGTTGCTGCTTTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAACAAATGAATACCCATACTTGTAGGGGATTGGTTGCTGCTTTG  1040

seq1  GGTAGCTAATCCTGTCCAGGTTCTACAACTACAGCCATGCTTTCAGGACA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTAATCCTGTCCAGGTTCTACAACTACAGCCATGCTTTCAGGACA  1090

seq1  CCCAGCAGCAGGAGGACACCTGGGCTAGCTAGTTGCCACCAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGCAGGAGGACACCTGGGCTAGCTAGTTGCCACCAGAATTC  1137