BAC Information

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BAC

Clone NameB6Ng01-010O09
Chromosome8 (Build37)
Map Location 17,451,535 - 17,542,385
singlet/doubletdoublet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010O09.bB6Ng01-010O09.g
ACCDH846434DH846435
length1861,053
definitionDH846434|Mus musculus domesticus DNA, BAC clone: B6Ng01-010O09, 5' end.DH846435|Mus musculus domesticus DNA, BAC clone: B6Ng01-010O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,451,535 - 17,451,720)(17,541,319 - 17,542,385)
sequence
tgtagcaatgtaatgtttattttcttctaattcattccatatttaacaga
gggactcaggtggccttacacttgctatgtaggtaaggttggccttgaac
ttctgatcctcttgcctgtactctggagtgctgaaattaaacccagatgg
aatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctttgggcagatatccccctgaatctatccacttgcttctcctct
ttgcctggaatgccttttcatgttttaagctgatattagatctcatcttt
cctgcaagctcattcaaagtcttgaaatatcagaaacacttcagtagact
ccctggaggcagcagggtagaatgaaaaaggccttaatttaggcttctgt
ttctccattctttaaggaaattattgacaagacctaccaagcctctggtt
gacctttcaggatgtcaggttcttcccaagctcatatctgacctgtatgg
taatagatatgttagcgccatagataaacgcagaattccacatgtttcag
ggagtcagtgtcgggtttctcccactgctgctgatggcagcaatcacata
ctattttggcaccgcctgaagcactgctccacatgtgaaaggaatagtcc
aagaattgacaatcttgcagtacttcaaaagatgataacttgccttttta
aagaggaattttttccaataggaaagattttgcatagacattttcggcaa
acatctgaaaacctcttatttcaatcaataagaaaagaatgacaatcctt
cagggggaacaaaaccaaaatacatttaaattcagaggcaacacaggaaa
gatggaaagaaagaaagctaagtctgtatttgtatttctagcccaattca
aaaaccatcatttccccaaacatcatcttaattaattctctcaacagtca
aatgagttaagaaagtagatacagtttttaggactaggcagttcttattt
atataaagtatatacatattaactttttgggaaatgggaaaattggcaca
ttaattgaggttagtgagtacccatatgtgtctatacaaagaatctctca
tatatggtacagagaaagcagtagctatagactggtagaaaacatggttt
tctatcaagtaaactgtgaagaccctggtctcagaatgcctctgctacta
tgaatacgaccctagaacctctctgtggaatactacggacatgatagtgg
tgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17451535_17451720
seq2: B6Ng01-010O09.b_53_238

seq1  TGTAGCAATGTAATGTTTATTTTCTTCTAATTCATTCCATATTTAACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAATGTAATGTTTATTTTCTTCTAATTCATTCCATATTTAACAGA  50

seq1  GGGACTCAGGTGGCCTTACACTTGCTATGTAGGTAAGGTTGGCCTTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCAGGTGGCCTTACACTTGCTATGTAGGTAAGGTTGGCCTTGAAC  100

seq1  TTCTGATCCTCTTGCCTGTACTCTGGAGTGCTGAAATTAAACCCAGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCCTCTTGCCTGTACTCTGGAGTGCTGAAATTAAACCCAGATGG  150

seq1  AATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  186
      ||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  186

seq1: chr8_17541319_17542385
seq2: B6Ng01-010O09.g_66_1118 (reverse)

seq1  ACACCACTATCATTGGTTCTGTAGGTATTCCCACAGAGAGGTTCCTAGGG  50
      |||||||||||||    || ||| ||||| ||||||||||||| ||||||
seq2  ACACCACTATCAT---GTCCGTA-GTATT-CCACAGAGAGGTT-CTAGGG  44

seq1  TCGGTATTCATAGTAAGCAAGAGGGCATCTGAGACCAGGGTCTTTCACAG  100
      || ||||||||||| ||| |||||   ||||||||||||||| |||||||
seq2  TC-GTATTCATAGT-AGC-AGAGGCATTCTGAGACCAGGGTC-TTCACAG  90

seq1  TTTTACTTGATAGAAAACCATGTTTTCTACCAGTCTATAGCTACCTGCTT  150
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  -TTTACTTGATAGAAAACCATGTTTTCTACCAGTCTATAGCTA-CTGCTT  138

seq1  TCTCTGTACCATATATTGAGAGATTCTTTGTATAGACACATATGGGTACT  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTCTGTACCATATA-TGAGAGATTCTTTGTATAGACACATATGGGTACT  187

seq1  CACTAACCTCAATTAATGTGCCAATTTTCCCATTTCCCAAAAAGTTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACCTCAATTAATGTGCCAATTTTCCCATTTCCCAAAAAGTTAATA  237

seq1  TGTATATACTTTATATAAATAAGAACTGCCTAGTCCTTAAAAACTGTATC  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTATATACTTTATATAAATAAGAACTGCCTAGTCC-TAAAAACTGTATC  286

seq1  TACTTTCTTAACTCATTTGACTGTTGAGAGAATTAATTAAGATGATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTTAACTCATTTGACTGTTGAGAGAATTAATTAAGATGATGTTT  336

seq1  GGGGAAATGATGGTTTTTGAATTGGGCTAGAAATACAAATACAGACTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATGATGGTTTTTGAATTGGGCTAGAAATACAAATACAGACTTAG  386

seq1  CTTTCTTTCTTTCCATCTTTCCTGTGTTGCCTCTGAATTTAAATGTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCCATCTTTCCTGTGTTGCCTCTGAATTTAAATGTATTT  436

seq1  TGGTTTTGTTCCCCCTGAAGGATTGTCATTCTTTTCTTATTGATTGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGTTCCCCCTGAAGGATTGTCATTCTTTTCTTATTGATTGAAAT  486

seq1  AAGAGGTTTTCAGATGTTTGCCGAAAATGTCTATGCAAAATCTTTCCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTTTCAGATGTTTGCCGAAAATGTCTATGCAAAATCTTTCCTAT  536

seq1  TGGAAAAAATTCCTCTTTAAAAAGGCAAGTTATCATCTTTTGAAGTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAATTCCTCTTTAAAAAGGCAAGTTATCATCTTTTGAAGTACTG  586

seq1  CAAGATTGTCAATTCTTGGACTATTCCTTTCACATGTGGAGCAGTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTGTCAATTCTTGGACTATTCCTTTCACATGTGGAGCAGTGCTTC  636

seq1  AGGCGGTGCCAAAATAGTATGTGATTGCTGCCATCAGCAGCAGTGGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGTGCCAAAATAGTATGTGATTGCTGCCATCAGCAGCAGTGGGAGA  686

seq1  AACCCGACACTGACTCCCTGAAACATGTGGAATTCTGCGTTTATCTATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGACACTGACTCCCTGAAACATGTGGAATTCTGCGTTTATCTATGG  736

seq1  CGCTAACATATCTATTACCATACAGGTCAGATATGAGCTTGGGAAGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAACATATCTATTACCATACAGGTCAGATATGAGCTTGGGAAGAACC  786

seq1  TGACATCCTGAAAGGTCAACCAGAGGCTTGGTAGGTCTTGTCAATAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCTGAAAGGTCAACCAGAGGCTTGGTAGGTCTTGTCAATAATTT  836

seq1  CCTTAAAGAATGGAGAAACAGAAGCCTAAATTAAGGCCTTTTTCATTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGAATGGAGAAACAGAAGCCTAAATTAAGGCCTTTTTCATTCTA  886

seq1  CCCTGCTGCCTCCAGGGAGTCTACTGAAGTGTTTCTGATATTTCAAGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGCCTCCAGGGAGTCTACTGAAGTGTTTCTGATATTTCAAGACT  936

seq1  TTGAATGAGCTTGCAGGAAAGATGAGATCTAATATCAGCTTAAAACATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAGCTTGCAGGAAAGATGAGATCTAATATCAGCTTAAAACATGA  986

seq1  AAAGGCATTCCAGGCAAAGAGGAGAAGCAAGTGGATAGATTCAGGGGGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATTCCAGGCAAAGAGGAGAAGCAAGTGGATAGATTCAGGGGGAT  1036

seq1  ATCTGCCCAAAGAATTC  1067
      |||||||||||||||||
seq2  ATCTGCCCAAAGAATTC  1053