BAC Information

Click to search

BAC

Clone NameB6Ng01-011A07
Chromosome8 (Build37)
Map Location 47,366,270 - 47,477,086
singlet/doubletdoublet
Overlap geneHelt
Upstream geneKlkb1, Cyp4v3, BC035537, Tlr3, Sorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325
Downstream geneLOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6, Stox2, 4930448N21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011A07.bB6Ng01-011A07.g
ACCDH846518DH846519
length1,110967
definitionDH846518|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A07, 5' end.DH846519|Mus musculus domesticus DNA, BAC clone: B6Ng01-011A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,366,270 - 47,367,388)(47,476,119 - 47,477,086)
sequence
gaattcttgtggatcggaaccggagcacaagacctgccatgcccagagta
gacgggtgaatggctcagttagctgccggagtgatccaggctccagagcc
ttgtctttagacctctgaagaaaggtgttgattcctcggtcccggggtga
ggttccaagtagaagagggctagcagggcaccatcgattgtgactttttc
cagacaggaaattttctttcatcactgcacccccgacttctcacactact
tctgaaactcaggagtgtggcccctgcctcccgtcagtcccaccagtgac
cagggattgcattttctatatcctttattctgtgatgtgcagcttagttt
tcccggaagactttcacttcttatttgtaaacatgtttagagaatgtaga
tgcagtcgttttaaagttaagttagcagacaacctagttcaacacatgag
gaataccttagaattgggatcaattacatgtgggagatgaggcaggtgtt
taaacacacacaccaccaccaccaccaccaccaccaccaccaccaccacc
accaccaccaccaccaccagtaacagaaaaataatctctgagagatgggc
ctgtgggtgtgggcgactggttgtattgcttttattacaaactcgatctt
agccattttctcctctcattgcagttttcgttttctcatctgcctttctc
ccttccttttggggtccgcctttaactttatacttgatgcagtgttctga
agtgggagggagaatggttaataagagcaacgctaagcctcacgagcgcc
ccctgctgcttctcggctgactatacaagtccttgcgattcgaattggca
gaagcaccctagttccaaagggtgctacagaagcccttgtgggtttgctt
gggtctaagctgcagattccttcattgctggagctttatagactcagacg
cgaggggaggagtcttcggcgttttatctgaactattgcttaaataattg
ctgataaagaatgagtcaacagttcacgggccctgagtggatgacagcat
gttgaagcagttagttttttctgtaaagggtagaaatgattaaggtatag
gtatttgcat
gaattcactgtgtagagtgtataagcacatactccgagtcctgcgttcac
cccttgagtgctggggttatagtgatcacatcacagccagctgtatccca
ataagggtttgcctggatcaaagctaaccctgagacacgatgcaatgagg
atacaaagccagggagtaaagacacctgaacagctttctaaccagagttc
tgccttgctaagacaacactggcaggaacctaagtccggtccgaagctta
aattctgatgcagaaagaacgtaagccgatgagcttaaagttcctgcaga
tgcagagattcagctcaagatccccgaaagcctgacgtgacccaggcaag
ggaggaagaaggttaaatgatgcatacttatggaggcttagcctgtggag
cctgtggctgatgagacttgtcccttctagatggggagtacctggaaata
agtgagaaacgttgctctgggctggtcagatggcttagttcacaaaggca
cttcctgacaaacctgacaataaaagccaatcctcttgacctaactatat
ggtgtaaggagacaaccgaatcctgaaggttgtcctgtgacctcctccca
catgtgacaaacatgtgtacatgtgcagacatacaccaaataataagaaa
tacatgctttgggctggagagatgactcaggagttaagagcaccgactac
tcttctagaggtgctgagttcagttcccaacaaccacatggtggctcaca
accatctgtaatggggtctgatgacctcttctggtgtgtctgaagagagc
agtggtagtatacgccaaagtataaaattaattaattattaaaaagaact
aagaaaaagaagtaatgcttaaagtttaaaaataaaacaaattcaagatg
aaactgctctagagcctaagtcgcttagggcaaggaatcttgtaagtggt
tgtgggttgggggtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_47366270_47367388
seq2: B6Ng01-011A07.b_47_1156

seq1  GAATTCTTGTGGATCGGAACCGGAGCACAAGACCTGCCATGCCCAGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGGATCGGAACCGGAGCACAAGACCTGCCATGCCCAGAGTA  50

seq1  GACGGGTGAATGGCTCAGTTAGCTGCCGGAGTGATCCAGGCTCCAGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGTGAATGGCTCAGTTAGCTGCCGGAGTGATCCAGGCTCCAGAGCC  100

seq1  TTGTCTTTAGACCTCTGAAGAAAGGTGTTGATTCCTCGGTCCCGGGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTAGACCTCTGAAGAAAGGTGTTGATTCCTCGGTCCCGGGGTGA  150

seq1  GGTTCCAAGTAGAAGAGGGCTAGCAGGGCACCATCGATTGTGACTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAAGTAGAAGAGGGCTAGCAGGGCACCATCGATTGTGACTTTTTC  200

seq1  CAGACAGGAAATTTTCTTTCATCACTGCACCCCCGACTTCTCACACTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGAAATTTTCTTTCATCACTGCACCCCCGACTTCTCACACTACT  250

seq1  TCTGAAACTCAGGAGTGTGGCCCCTGCCTCCCGTCAGTCCCACCAGTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACTCAGGAGTGTGGCCCCTGCCTCCCGTCAGTCCCACCAGTGAC  300

seq1  CAGGGATTGCATTTTCTATATCCTTTATTCTGTGATGTGCAGCTTAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATTGCATTTTCTATATCCTTTATTCTGTGATGTGCAGCTTAGTTT  350

seq1  TCCCGGAAGACTTTCACTTCTTATTTGTAAACATGTTTAGAGAATGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGAAGACTTTCACTTCTTATTTGTAAACATGTTTAGAGAATGTAGA  400

seq1  TGCAGTCGTTTTAAAGTTAAGTTAGCAGACAACCTAGTTCAACACATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCGTTTTAAAGTTAAGTTAGCAGACAACCTAGTTCAACACATGAG  450

seq1  GAATACCTTAGAATTGGGATCAATTACATGTGGGAGATGAGGCAGGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCTTAGAATTGGGATCAATTACATGTGGGAGATGAGGCAGGTGTT  500

seq1  TAAACACACACACCACCACCACCACCACCACCACCACCACCACCACCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACACACACCACCACCACCACCACCACCACCACCACCACCACCACC  550

seq1  ACCACCACCACCACCACCAGTAACAGAAAAATAATCTCTGAGAGATGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACCACCACCACCAGTAACAGAAAAATAATCTCTGAGAGATGGGC  600

seq1  CTGTGGGTGTGGGCGACTGGTTGTATTGCTTTTATTACAAACTCGATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTGTGGGCGACTGGTTGTATTGCTTTTATTACAAACTCGATCTT  650

seq1  AGCCATTTTCTCCTCTCATTGCAGTTTTCGTTTTCTCATCTGCCTTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTTCTCCTCTCATTGCAGTTTTCGTTTTCTCATCTGCCTTTCTC  700

seq1  CCTTCCTTTTGGGGTCCGCCTTTAACTTTATACTTGATGCAGTGTTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTTTGGGGTCCGCCTTTAACTTTATACTTGATGCAGTGTTCTGA  750

seq1  AGTGGGAGGGAGAATGGTTAATAAGAGCAACGCTAAGCCTCACGAGCGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGGGAGAATGGTTAATAAGAGCAACGCTAAGCCTCACGAGCGCC  800

seq1  CCCTGCTGCTTCTCGGCTGACTATACAAGTCCTTGCGATTCGAATTGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGCTTCTCGGCTGACTATACAAGTCCTTGCGATTCGAATTGGCA  850

seq1  GAAGCACCCTAGTTCCAAAGGGTGCTACAGAAGCCCTTGTGGGTTTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACCCTAGTTCCAAAGGGTGCTACAGAAGCCCTTGTGGGTTTGCTT  900

seq1  -GGTCTAAGCTGCAGATTCCTTCATTGCTGGAGCTTTATAGACTCAGACG  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTAAGCTGCAGATTCCTTCATTGCTGGAGCTTTATAGACTCAGACG  950

seq1  CGAGGGGAGGAGTC-TCGGCGTTTTATCTGAACTATTGCTTAAATAAATT  998
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  CGAGGGGAGGAGTCTTCGGCGTTTTATCTGAACTATTGCTTAAAT-AATT  999

seq1  GCTGATAAAGAATGAAGTCAAACAAGTTCACCGGGCCTGAAGTGGAATGA  1048
      |||||||||||||| ||||||   ||||||| || |||| ||||| ||||
seq2  GCTGATAAAGAATG-AGTCAA--CAGTTCACGGGCCCTG-AGTGG-ATGA  1044

seq1  CAGCAATGTTGAAGCAGTTAAGTTTTTTCTGTAAAAAGGTAGAAAATGAT  1098
      |||| |||||||||||||| |||||||||||| ||| ||||| |||||||
seq2  CAGC-ATGTTGAAGCAGTT-AGTTTTTTCTGT-AAAGGGTAG-AAATGAT  1090

seq1  TATAGGTATAGGTATTTGCAT  1119
      || ||||||||||||||||||
seq2  TA-AGGTATAGGTATTTGCAT  1110

seq1: chr8_47476119_47477086
seq2: B6Ng01-011A07.g_66_1032 (reverse)

seq1  AGCAACCCCAACCCAC-ACCACTTAC-AGGTTCCTTGCCCT-AGCGACTT  47
      |||| ||||||||||| ||||||||| || ||||||||||| ||||||||
seq2  AGCACCCCCAACCCACAACCACTTACAAGATTCCTTGCCCTAAGCGACTT  50

seq1  AGGCTCTAGAGCAG-TTCATCTTGATTTTTGTTTTTATTTTTAAACTTTA  96
      |||||||||||||| |||||||||| |||   ||||||||||||||||||
seq2  AGGCTCTAGAGCAGTTTCATCTTGAATTT--GTTTTATTTTTAAACTTTA  98

seq1  AGCATTTACTTCTTTTTCTTAGTTCTTTTTTAATTAATTAATTAATTTTA  146
      |||| |||||||||||||||||||||||||  | ||||||||||||||||
seq2  AGCA-TTACTTCTTTTTCTTAGTTCTTTTT--AATAATTAATTAATTTTA  145

seq1  TACTTTGGCGTATACTACCACTGCTCTCTTCAGACACACCAGAAGAGGTC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGGCGTATACTACCACTGCTCTCTTCAGACACACCAGAAGAGGTC  195

seq1  ATCAGACCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGTTGGGAAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGTTGGGAAC  245

seq1  TGAACTCAGCACCTCTAGAAGAGTAGTCGGTGCTCTTAACTCCTGAGTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGCACCTCTAGAAGAGTAGTCGGTGCTCTTAACTCCTGAGTCA  295

seq1  TCTCTCCAGCCCAAAGCATGTATTTCTTATTATTTGGTGTATGTCTGCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGCCCAAAGCATGTATTTCTTATTATTTGGTGTATGTCTGCAC  345

seq1  ATGTACACATGTTTGTCACATGTGGGAGGAGGTCACAGGACAACCTTCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACATGTTTGTCACATGTGGGAGGAGGTCACAGGACAACCTTCAG  395

seq1  GATTCGGTTGTCTCCTTACACCATATAGTTAGGTCAAGAGGATTGGCTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGGTTGTCTCCTTACACCATATAGTTAGGTCAAGAGGATTGGCTTT  445

seq1  TATTGTCAGGTTTGTCAGGAAGTGCCTTTGTGAACTAAGCCATCTGACCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCAGGTTTGTCAGGAAGTGCCTTTGTGAACTAAGCCATCTGACCA  495

seq1  GCCCAGAGCAACGTTTCTCACTTATTTCCAGGTACTCCCCATCTAGAAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGCAACGTTTCTCACTTATTTCCAGGTACTCCCCATCTAGAAGG  545

seq1  GACAAGTCTCATCAGCCACAGGCTCCACAGGCTAAGCCTCCATAAGTATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTCTCATCAGCCACAGGCTCCACAGGCTAAGCCTCCATAAGTATG  595

seq1  CATCATTTAACCTTCTTCCTCCCTTGCCTGGGTCACGTCAGGCTTTCGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTAACCTTCTTCCTCCCTTGCCTGGGTCACGTCAGGCTTTCGGG  645

seq1  GATCTTGAGCTGAATCTCTGCATCTGCAGGAACTTTAAGCTCATCGGCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGAGCTGAATCTCTGCATCTGCAGGAACTTTAAGCTCATCGGCTT  695

seq1  ACGTTCTTTCTGCATCAGAATTTAAGCTTCGGACCGGACTTAGGTTCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCTTTCTGCATCAGAATTTAAGCTTCGGACCGGACTTAGGTTCCTG  745

seq1  CCAGTGTTGTCTTAGCAAGGCAGAACTCTGGTTAGAAAGCTGTTCAGGTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTTGTCTTAGCAAGGCAGAACTCTGGTTAGAAAGCTGTTCAGGTG  795

seq1  TCTTTACTCCCTGGCTTTGTATCCTCATTGCATCGTGTCTCAGGGTTAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTCCCTGGCTTTGTATCCTCATTGCATCGTGTCTCAGGGTTAGC  845

seq1  TTTGATCCAGGCAAACCCTTATTGGGATACAGCTGGCTGTGATGTGATCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCCAGGCAAACCCTTATTGGGATACAGCTGGCTGTGATGTGATCA  895

seq1  CTATAACCCCAGCACTCAAGGGGTGAACGCAGGACTCGGAGTATGTGCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACCCCAGCACTCAAGGGGTGAACGCAGGACTCGGAGTATGTGCTT  945

seq1  ATACACTCTACACAGTGAATTC  968
      ||||||||||||||||||||||
seq2  ATACACTCTACACAGTGAATTC  967