BAC Information

Click to search

BAC

Clone NameB6Ng01-011B22
Chromosome8 (Build37)
Map Location 112,431,137 - 112,524,793
singlet/doubletdoublet
Overlap genePhlppl, Marveld3, LOC100041884, Tat
Upstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1
Downstream geneChst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011B22.bB6Ng01-011B22.g
ACCDH846594DH846595
length1,1231,094
definitionDH846594|Mus musculus domesticus DNA, BAC clone: B6Ng01-011B22, 5' end.DH846595|Mus musculus domesticus DNA, BAC clone: B6Ng01-011B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,431,137 - 112,432,265)(112,523,676 - 112,524,793)
sequence
gaattctctctgcattgcttcctgggtactgggattataggcatgtaccc
ccacatccagcctttgttgtagtgtggtttacctctctataatggctgtt
gatgttgatcattgtttcatgttcttgttggttattcatgtatattattt
ggagaaatgtctgctcagattctttgccattttaaacagtctgttcatta
ctgctttttgaccatcctttctgattagaagttgtgactttttccctcct
ctcttcagatagaagaagtgaagcgccggcagcactcccttgctttcagc
tcagctggagcccaagctcagacctatcatgtcagctttgagactttggc
tgagtaccagagatggcaacggcaggcgtctaaggttggaagcttggata
gagatgaggatgtagcagcaagtgaccatccttagtgtcacacttggtct
ttcttagtgcacaatgaatataataatggaatttcactgggtctttactt
tttgtattataatagaaaatggtattaaatgttttcaggtacatttctgt
ctgtaccatgtttgtgaggtgggtcttcgacagagttatggcatagtgaa
attagacttttaaaggaactgagacctgagatctccattgcttcccatct
gccacagtagtcactgatagacacacctgtccctagtgtgtacctggtgc
ttcgtgctctgtactttgttagaacagcctcgatgaaccactgaaaaggt
ggacttactgatgggacatgacctgtgattctgtcacaaatccgtcttct
ggtatgttgagggtaattggcatttcagcatagctctgcttagctattga
agatatgacactgaagtgcactgcatctctaaaacttgtgctctttggat
tctttatgtctcagacacaagtgactttcctcatgtgttttaaacacatt
atggattttgagacatttccgtttattggtcttttgttgctatatcagct
atacatgtgtttttcgtaaaactggtttcagttgtggagttacttcgatc
cttctgctctcttcaagaaaaggtactgcttcttggggcatctttggcaa
ttcagcatgttgtgtatgctttc
gaattctgttagtaatgccaggtggaattatctgtgcaggggaagctaag
agccttttgtaaagtaccaccttcctgtttattttggggggcaggagaca
ggaaaaggggagccagacgtttttggaaaagatccgctctggtggcacac
aggaaatgattgtttttatcatcttaatcattatatcttcctttattatg
gatatgacagggaaatttaaggcataaaatgtctggcagctcactgaact
gaagcacaggttagaagggacttttggcacttttttttttttttaagtag
gataattctttggttgtgaccagcaggattgagaccccaaatgcctcttc
taattgagaaaacccgcctcggtgagccatctccagacggtgatgatcta
gtacagcccccagccaaccttgtaagatttctcctgcccttgtctaaaga
gaagcgttgagggaaagtcgtaaagaggcaactgcaccacagaaggtttg
cagacaaagtgctgacctcttatccctaggtcaaatgaaagtagttccac
cgagtagctacaggagttaggtaagggtaggtgactggtactgaagatac
acgtagacatccgatacataggtagggtgtgtgggacaatgctaacagac
aggcagaagaactggtaaggttgagtaagctcaaaccctggggaatctcg
gagatttgagaagagcaagagtggagccattccccgtccgtctctgtacc
tgctctggacatgtaaccacgacagccaacagagaggatcacgggcagtc
agtcacatagcataaagtgactcctcttcgccatgttaatgaggtatcta
gatagcttgagcctttagccagtgaccttccttttcctggggattctcac
gcccttcaccaagaggtacttaatctctggggtcatccaaataaagtgta
tggatcacaccacctcctcatcagcagtatgactagcacgattcatcaca
gagagctgcttcattagatgccaagggaagcttcactaaagatcttgcta
gatcttgagaagccagagagcatacttgataattatttaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_112431137_112432265
seq2: B6Ng01-011B22.b_43_1165

seq1  GAATTCTCTCTGCATTGCTTCCTGGGTACTGGGATTATAGGCATGTACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTGCATTGCTTCCTGGGTACTGGGATTATAGGCATGTACCC  50

seq1  CCACATCCAGCCTTTGTTGTAGTGTGGTTTACCTCTCTATAATGGCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCAGCCTTTGTTGTAGTGTGGTTTACCTCTCTATAATGGCTGTT  100

seq1  GATGTTGATCATTGTTTCATGTTCTTGTTGGTTATTCATGTATATTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGATCATTGTTTCATGTTCTTGTTGGTTATTCATGTATATTATTT  150

seq1  GGAGAAATGTCTGCTCAGATTCTTTGCCATTTTAAACAGTCTGTTCATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATGTCTGCTCAGATTCTTTGCCATTTTAAACAGTCTGTTCATTA  200

seq1  CTGCTTTTTGACCATCCTTTCTGATTAGAAGTTGTGACTTTTTCCCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTTGACCATCCTTTCTGATTAGAAGTTGTGACTTTTTCCCTCCT  250

seq1  CTCTTCAGATAGAAGAAGTGAAGCGCCGGCAGCACTCCCTTGCTTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGATAGAAGAAGTGAAGCGCCGGCAGCACTCCCTTGCTTTCAGC  300

seq1  TCAGCTGGAGCCCAAGCTCAGACCTATCATGTCAGCTTTGAGACTTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGAGCCCAAGCTCAGACCTATCATGTCAGCTTTGAGACTTTGGC  350

seq1  TGAGTACCAGAGATGGCAACGGCAGGCGTCTAAGGTTGGAAGCTTGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACCAGAGATGGCAACGGCAGGCGTCTAAGGTTGGAAGCTTGGATA  400

seq1  GAGATGAGGATGTAGCAGCAAGTGACCATCCTTAGTGTCACACTTGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGGATGTAGCAGCAAGTGACCATCCTTAGTGTCACACTTGGTCT  450

seq1  TTCTTAGTGCACAATGAATATAATAATGGAATTTCACTGGGTCTTTACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTGCACAATGAATATAATAATGGAATTTCACTGGGTCTTTACTT  500

seq1  TTTGTATTATAATAGAAAATGGTATTAAATGTTTTCAGGTACATTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTATAATAGAAAATGGTATTAAATGTTTTCAGGTACATTTCTGT  550

seq1  CTGTACCATGTTTGTGAGGTGGGTCTTCGACAGAGTTATGGCATAGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCATGTTTGTGAGGTGGGTCTTCGACAGAGTTATGGCATAGTGAA  600

seq1  ATTAGACTTTTAAAGGAACTGAGACCTGAGATCTCCATTGCTTCCCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACTTTTAAAGGAACTGAGACCTGAGATCTCCATTGCTTCCCATCT  650

seq1  GCCACAGTAGTCACTGATAGACACACCTGTCCCTAGTGTGTACCTGGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGTAGTCACTGATAGACACACCTGTCCCTAGTGTGTACCTGGTGC  700

seq1  TTCGTGCTCTGTACTTTGTTAGAACAGCCTCGATGAACCACTGAAAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGCTCTGTACTTTGTTAGAACAGCCTCGATGAACCACTGAAAAGGT  750

seq1  GGACTTACTGATGGGACATGACCTGTGATTCTGTCACAAATCCGTCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTACTGATGGGACATGACCTGTGATTCTGTCACAAATCCGTCTTCT  800

seq1  GGTATGTTGAGGGTAATTGGCATTTCAGCATAGCTCTGCTTAGCTATTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTTGAGGGTAATTGGCATTTCAGCATAGCTCTGCTTAGCTATTGA  850

seq1  AGATATGACACTGAAGTGCACTGCATCTCTAAAACTTGTGCTCTTTGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGACACTGAAGTGCACTGCATCTCTAAAACTTGTGCTCTTTGGAT  900

seq1  TCTTTATGTCTCAGGACACAAGTGACTTTCCTCATGTGTTTTTAAACACA  950
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  TCTTTATGTCTCA-GACACAAGTGACTTTCCTCATGTG-TTTTAAACACA  948

seq1  TTATGGATTTTGAAGACAATTCCGTTTATTGGTCTTTTGTTGCTATATCA  1000
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  TTATGGATTTTG-AGACATTTCCGTTTATTGGTCTTTTGTTGCTATATCA  997

seq1  GCTATACAATGTGTTTTTTCGTAAAAACTGGTTTCAGTTGT-GAGTAACT  1049
      ||||||| ||||| |||||||| |||||||||||||||||| |||| |||
seq2  GCTATAC-ATGTG-TTTTTCGT-AAAACTGGTTTCAGTTGTGGAGTTACT  1044

seq1  TCGATCCTTCTGCCTCT-TTCAGGAGAAGTTACTGCTTCTT-GGGCATCT  1097
      |||||||||||| |||| |||| || ||| ||||||||||| ||||||||
seq2  TCGATCCTTCTG-CTCTCTTCAAGAAAAGGTACTGCTTCTTGGGGCATCT  1093

seq1  TTGGCAGATTCAGCAATGTTGTGTATGCTTTC  1129
      |||||| ||||||| |||||||||||||||||
seq2  TTGGCA-ATTCAGC-ATGTTGTGTATGCTTTC  1123

seq1: chr8_112523676_112524793
seq2: B6Ng01-011B22.g_66_1159 (reverse)

seq1  TTTTTTAAATAAAATTTTATCAAGTATGCTTCTCTGTGCCTTCTTCAGGG  50
      ||||||||||||    ||||||||||||   |||| || |||||  |  |
seq2  TTTTTTAAATAA----TTATCAAGTATG---CTCTCTGGCTTCTCAA--G  41

seq1  ATCTTGGGCATGGCTCTTTTAGGTGAAGGCCTTCCCTGTGGCAATCTTTA  100
      ||||   |||  | |||||   ||||||  ||||||| |||||   | ||
seq2  ATCT--AGCA-AGATCTTT--AGTGAAG--CTTCCCT-TGGCA---TCTA  80

seq1  ATGAAGCAGCTCTCTGTGATGATCTGTGCTTGGTCATACTGCTTGATTGG  150
      ||||||||||||||||||||||   |||| | |||||||||| ||||  |
seq2  ATGAAGCAGCTCTCTGTGATGAATCGTGC-TAGTCATACTGC-TGATGAG  128

seq1  GGGGTGGGTGTGGATCCATACACTTTATTTGGGTGA-CCCAGAGATTAAG  199
      | ||| ||||| |||||||||||||||||||| ||| |||||||||||||
seq2  GAGGT-GGTGT-GATCCATACACTTTATTTGGATGACCCCAGAGATTAAG  176

seq1  TACCTCTTGGGTGAAGGGCGTGAGAATCCCCAGG-AAAGGAAGGTCACTG  248
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TACCTCTT-GGTGAAGGGCGTGAGAATCCCCAGGAAAAGGAAGGTCACTG  225

seq1  GCTAAAGGCTCAAGGCTATCTAGATACCTCATTAACATGGCGAAGAGGAG  298
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGGCTCAA-GCTATCTAGATACCTCATTAACATGGCGAAGAGGAG  274

seq1  TCACTTTATGCTATGTGACTGACTGCCCGTGGTCCTCTCTGTTGGCTGTC  348
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCACTTTATGCTATGTGACTGACTGCCCGTGATCCTCTCTGTTGGCTGTC  324

seq1  GTGGTTACATGTCCAGAGCAGGTACAGAGACGGACGGGGAATGGCTCCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTACATGTCCAGAGCAGGTACAGAGACGGACGGGGAATGGCTCCAC  374

seq1  TCTTGCTCTTCTCAAATCTCCGAGATTCCCCAGGGTTTGAGCTTACTCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCTTCTCAAATCTCCGAGATTCCCCAGGGTTTGAGCTTACTCAA  424

seq1  CCTTACCAGTTCTTCTGCCTGTCTGTTAGCATTGTCCCACACACCCTACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCAGTTCTTCTGCCTGTCTGTTAGCATTGTCCCACACACCCTACC  474

seq1  TATGTATCGGATGTCTACGTGTATCTTCAGTACCAGTCACCTACCCTTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCGGATGTCTACGTGTATCTTCAGTACCAGTCACCTACCCTTAC  524

seq1  CTAACTCCTGTAGCTACTCGGTGGAACTACTTTCATTTGACCTAGGGATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCCTGTAGCTACTCGGTGGAACTACTTTCATTTGACCTAGGGATA  574

seq1  AGAGGTCAGCACTTTGTCTGCAAACCTTCTGTGGTGCAGTTGCCTCTTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCAGCACTTTGTCTGCAAACCTTCTGTGGTGCAGTTGCCTCTTTA  624

seq1  CGACTTTCCCTCAACGCTTCTCTTTAGACAAGGGCAGGAGAAATCTTACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTTCCCTCAACGCTTCTCTTTAGACAAGGGCAGGAGAAATCTTACA  674

seq1  AGGTTGGCTGGGGGCTGTACTAGATCATCACCGTCTGGAGATGGCTCACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGCTGGGGGCTGTACTAGATCATCACCGTCTGGAGATGGCTCACC  724

seq1  GAGGCGGGTTTTCTCAATTAGAAGAGGCATTTGGGGTCTCAATCCTGCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGGGTTTTCTCAATTAGAAGAGGCATTTGGGGTCTCAATCCTGCTG  774

seq1  GTCACAACCAAAGAATTATCCTACTTAAAAAAAAAAAAAAGTGCCAAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAACCAAAGAATTATCCTACTTAAAAAAAAAAAAAAGTGCCAAAAG  824

seq1  TCCCTTCTAACCTGTGCTTCAGTTCAGTGAGCTGCCAGACATTTTATGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTAACCTGTGCTTCAGTTCAGTGAGCTGCCAGACATTTTATGCC  874

seq1  TTAAATTTCCCTGTCATATCCATAATAAAGGAAGATATAATGATTAAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTCCCTGTCATATCCATAATAAAGGAAGATATAATGATTAAGAT  924

seq1  GATAAAAACAATCATTTCCTGTGTGCCACCAGAGCGGATCTTTTCCAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAACAATCATTTCCTGTGTGCCACCAGAGCGGATCTTTTCCAAAA  974

seq1  ACGTCTGGCTCCCCTTTTCCTGTCTCCTGCCCCCCAAAATAAACAGGAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGGCTCCCCTTTTCCTGTCTCCTGCCCCCCAAAATAAACAGGAAG  1024

seq1  GTGGTACTTTACAAAAGGCTCTTAGCTTCCCCTGCACAGATAATTCCACC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACTTTACAAAAGGCTCTTAGCTTCCCCTGCACAGATAATTCCACC  1074

seq1  TGGCATTACTAACAGAATTC  1118
      ||||||||||||||||||||
seq2  TGGCATTACTAACAGAATTC  1094