BAC Information

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BAC

Clone NameB6Ng01-012G15
Chromosome8 (Build37)
Map Location 78,187,175 - 78,302,854
singlet/doubletdoublet
Overlap gene1700007B14Rik, LOC666036
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012G15.bB6Ng01-012G15.g
ACCDH847515DH847516
length1,2011,109
definitionDH847515|Mus musculus domesticus DNA, BAC clone: B6Ng01-012G15, 5' end.DH847516|Mus musculus domesticus DNA, BAC clone: B6Ng01-012G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,187,175 - 78,188,387)(78,301,725 - 78,302,854)
sequence
gaattcagctacccaagcaacttttttagatttgattatacaaatgatta
agatgctatttgtcaactctaggttcccatcccttttaattatatagata
atcaaactaagaactggtaattctctcttctaactattaattgtttgtaa
ttacctacagattaaaactgcatgtgtaattaactctaagaattaattaa
tacaaaggaattgatagaaaggaaacaaaatgagcttagcattaaagaga
ctctggggacccaagaccactaaacccatttggttctgtcatgtcctaat
aaagatatattggcttttccttgtgccttcttcagaggcagctgcatgca
ctgttacttcacagcatttagttttttggttgagtgaaaccttctaggtg
aagtttgaattgctattgtcttttgccaatgttcagatgaactgaacaaa
tctattgtttgtgacactggggaatgccagctaatcctttgcttcctcct
ttctcctctcattccctcaagctttggtagcatgcccaagtacacagtta
ccagcttcctgtgaatgatttgagtaatttaaatttctaaaacagctatg
cttattaggcttcagaaacatctcccacctgtttaaataattggctcatg
ttaggtacataaatttgaataaaagtgaaaagtcttccacctggaggata
cttagaaactattaccattataattgtgaaaatattagaaaccgaggaaa
gattatctggtaaaaatatcttgtcccccaaaaggtggcactttaaaatc
ctgtgagaacatttttgtcctctcgtgaatttgtattgcttgggagcttt
cacttgtatggttttgctggttgtcatgccacttaaatgatcccagcatc
aaatcggtgctgggatctaagaaaagtgaagccttttcagttgtgtctag
attgtcagtgagatatgcagaaggcagtggataatatgaacttgtatttt
tccagagagagcctaaaatagaaatgaggaactgcaaagtcgggagacat
cgctgtaggagtctttagcatttgttttgatgcctcgagaatgctgcttc
ttcactgcttgcctgaatgtttgatgagaattaattattcctgctataac
cgtgcagctcgtctctgtggagccttcatatcagcttgcccacacctaga
c
gaattcaagtagcagaaaactgtcttactttcctccaaaatcagtgggat
gagaaaaattctgaaggtggcatttgtccattagtgatggagaaaactag
atgattccatgttcttctttcttgagttaaatacaatttcaggaaggaaa
ataacactgtcacaagtgtgtggagatgctgttgtgctgcctatgtaata
cttgcttatcaacatgtgtggttggtagtagtagatatgagccatctctt
gtaggtttacagtagatgtgtccctttgacggcactgaggtgcccgctgg
cctcagatgtctcacagtactgactttatctgcttacatccaaagggcat
tttactgctctcatgctaagtagcttgctgtggttgtcaaggtttgaagc
tacagctttcctataccgtgaatctatacacagtgctctgtagtcacaca
atgctctgcaactttagagcagccttgcacagcccagctaaagggaaagt
agagggagaaattaaatcagattaggatttacatataggcttataaagga
actggccctgctgccaggcaaaaatattttttaatgtggccaaaaacata
gcatttggtgaccattttctttattgagacatcttgtataacaatacatt
cataggaatgtaaataaacagtgggatctgtgtttctgttatgagccagc
agaagcgagctatttaataagaaaaagtacttcaatactaaaaaggaata
ttatttgattattaagactaagacagaatggtagccagtatgtagtctct
tctctggggtctaatcctattgcataaaatgaacttttaaaaactggcag
ttttcataatatttaagaaattattattagtttctttacattcaaacatc
cattttaattttatttatctctctgatgtcattatatttagcccaattgc
ttctccctcactccactctccactttccctactctctccacaataaatgc
ctgacttccccagaaaacagcagcctccctagacatcaagtgacacagca
taaaagaatcaataaaccaggcacaaaccatgcatggaactgggtaagaa
gttcagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_78187175_78188387
seq2: B6Ng01-012G15.b_44_1244

seq1  GAATTCAGCTACCCAAGCAACTTTTTTAGATTTGATTATACAAATGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTACCCAAGCAACTTTTTTAGATTTGATTATACAAATGATTA  50

seq1  AGATGCTATTTGTCAACTCTAGGTTCCCATCCCTTTTAATTATATAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTATTTGTCAACTCTAGGTTCCCATCCCTTTTAATTATATAGATA  100

seq1  ATCAAACTAAGAACTGGTAATTCTCTCTTCTAACTATTAATTGTTTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTAAGAACTGGTAATTCTCTCTTCTAACTATTAATTGTTTGTAA  150

seq1  TTACCTACAGATTAAAACTGCATGTGTAATTAACTCTAAGAATTAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTACAGATTAAAACTGCATGTGTAATTAACTCTAAGAATTAATTAA  200

seq1  TACAAAGGAATTGATAGAAAGGAAACAAAATGAGCTTAGCATTAAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGAATTGATAGAAAGGAAACAAAATGAGCTTAGCATTAAAGAGA  250

seq1  CTCTGGGGACCCAAGACCACTAAACCCATTTGGTTCTGTCATGTCCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGACCCAAGACCACTAAACCCATTTGGTTCTGTCATGTCCTAAT  300

seq1  AAAGATATATTGGCTTTTCCTTGTGCCTTCTTCAGAGGCAGCTGCATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATATTGGCTTTTCCTTGTGCCTTCTTCAGAGGCAGCTGCATGCA  350

seq1  CTGTTACTTCACAGCATTTAGTTTTTTGGTTGAGTGAAACCTTCTAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACTTCACAGCATTTAGTTTTTTGGTTGAGTGAAACCTTCTAGGTG  400

seq1  AAGTTTGAATTGCTATTGTCTTTTGCCAATGTTCAGATGAACTGAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGAATTGCTATTGTCTTTTGCCAATGTTCAGATGAACTGAACAAA  450

seq1  TCTATTGTTTGTGACACTGGGGAATGCCAGCTAATCCTTTGCTTCCTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTTGTGACACTGGGGAATGCCAGCTAATCCTTTGCTTCCTCCT  500

seq1  TTCTCCTCTCATTCCCTCAAGCTTTGGTAGCATGCCCAAGTACACAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTCATTCCCTCAAGCTTTGGTAGCATGCCCAAGTACACAGTTA  550

seq1  CCAGCTTCCTGTGAATGATTTGAGTAATTTAAATTTCTAAAACAGCTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCCTGTGAATGATTTGAGTAATTTAAATTTCTAAAACAGCTATG  600

seq1  CTTATTAGGCTTCAGAAACATCTCCCACCTGTTTAAATAATTGGCTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAGGCTTCAGAAACATCTCCCACCTGTTTAAATAATTGGCTCATG  650

seq1  TTAGGTACATAAATTTGAATAAAAGTGAAAAGTCTTCCACCTGGAGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTACATAAATTTGAATAAAAGTGAAAAGTCTTCCACCTGGAGGATA  700

seq1  CTTAGAAACTATTACCATTATAATTGTGAAAATATTAGAAACCGAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAACTATTACCATTATAATTGTGAAAATATTAGAAACCGAGGAAA  750

seq1  GATTATCTGGTAAAAATATCTTGTCCCCCAAAAGGTGGCACTTTAAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTGGTAAAAATATCTTGTCCCCCAAAAGGTGGCACTTTAAAATC  800

seq1  CTGTGAGAACATTTTTGTCCCCTCGTGAATTTGTATTGCTTGGGAGCTTT  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGTGAGAACATTTTTGTCCTCTCGTGAATTTGTATTGCTTGGGAGCTTT  850

seq1  CACTTGTATGGTTTTGCTGGTTGTCATGCCACTTAAATGATCCCAGCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTATGGTTTTGCTGGTTGTCATGCCACTTAAATGATCCCAGCATC  900

seq1  AAATCGGTGCTGGGATCTAAGAAAAGTGAAGCCTTTTCAGTTGTGTCTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGGTGCTGGGATCTAAGAAAAGTGAAGCCTTTTCAGTTGTGTCTAG  950

seq1  ATTGTCAGTGAGATATGCAGAAGGCAGTGGAATAATATGAACTTGTATTT  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTGTCAGTGAGATATGCAGAAGGCAGTGG-ATAATATGAACTTGTATTT  999

seq1  TCCAAGAGAGAGCCTAAAATAAGAAATGAGGAACTGCAAAGTCGGGAAGA  1050
      | | |||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TTCCAGAGAGAGCCTAAAAT-AGAAATGAGGAACTGCAAAGTCGGG-AGA  1047

seq1  CATCGCTGTAAGGAGGTCTTTAGCATTTGTTTTTGATG-CTCGAGAATTG  1099
      ||||||||| |||| |||||||||||||| |||||||| |||||||| ||
seq2  CATCGCTGT-AGGA-GTCTTTAGCATTTG-TTTTGATGCCTCGAGAA-TG  1093

seq1  CTGC-TCTTCACTGCT--GCTGAGTGTTTTGATGAGAATTTTAATTATTC  1146
      |||| |||||||||||   |||| || |||||||||||  ||||||||||
seq2  CTGCTTCTTCACTGCTTGCCTGAATG-TTTGATGAGAA--TTAATTATTC  1140

seq1  TGCCTATTAACCTGCAGCCTGCTCCTGTGCAGCCTTTACATACTCATGCT  1196
         |||| | | ||||||  |   ||||| ||||||  |||| ||| |||
seq2  CTGCTATAACCGTGCAGCTCGTCTCTGTGGAGCCTT--CATA-TCA-GCT  1186

seq1  TGCACACACACCTAGAC  1213
      ||  | |||||||||||
seq2  TG--CCCACACCTAGAC  1201

seq1: chr8_78301725_78302854
seq2: B6Ng01-012G15.g_65_1173 (reverse)

seq1  CTACTGGACTTCCTTACCCAGTTTCAATGCAAGGGTTTGTGCCTGGTTTT  50
      |||||| |||| ||||||||| ||| |||| | ||||||||||||| |||
seq2  CTACTGAACTT-CTTACCCAG-TTCCATGC-ATGGTTTGTGCCTGG-TTT  46

seq1  ATTGTATCTTTTTATGCTGTGTTCACTTGATGTCCTTGGGAGGCCTGCTG  100
      |||| ||  |||||||||||| ||||||||||| || |||||| ||||||
seq2  ATTG-ATTCTTTTATGCTGTG-TCACTTGATGT-CTAGGGAGG-CTGCTG  92

seq1  TTTTTCTGGGGAAAGTCAGGCATTTATTTGTGGGAGAAGAG-GTAGGGGA  149
       |||||||||| |||||||||||||| ||||||    |||| ||| ||||
seq2  -TTTTCTGGGG-AAGTCAGGCATTTA-TTGTGG----AGAGAGTA-GGGA  134

seq1  AAGTGGAGGAGTGGAGTGAGGGGAAGAAGCAATTGGGCTAAATATAATGA  199
      ||||||| ||||||||||||||  ||||||||||||||||||||||||||
seq2  AAGTGGA-GAGTGGAGTGAGGG--AGAAGCAATTGGGCTAAATATAATGA  181

seq1  CATCAGAGAAGAATAAATAAAAATTAAAATGGATGTTTGAATGTAAAGAA  249
      |||||||||   |||||| |||||||||||||||||||||||||||||||
seq2  CATCAGAGA--GATAAAT-AAAATTAAAATGGATGTTTGAATGTAAAGAA  228

seq1  ACTAATAATAATTTCTTAAATATTATGAAAACTGCCAGTTTTTAAAAGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAATAATTTCTTAAATATTATGAAAACTGCCAGTTTTTAAAAGTT  278

seq1  CATTTTATGCAATAGGATTAGACCCCAGAGAAGAGACTACATACTGGCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATGCAATAGGATTAGACCCCAGAGAAGAGACTACATACTGGCTA  328

seq1  CCATTCTGTCTTAGTCTTAATAATCAAATAATATTCCTTTTTAGTATTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGTCTTAGTCTTAATAATCAAATAATATTCCTTTTTAGTATTGA  378

seq1  AGTACTTTTTCTTATTAAATAGCTCGCTTCTGCTGGCTCATAACAGAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTTTCTTATTAAATAGCTCGCTTCTGCTGGCTCATAACAGAAAC  428

seq1  ACAGATCCCACTGTTTATTTACATTCCTATGAATGTATTGTTATACAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCCCACTGTTTATTTACATTCCTATGAATGTATTGTTATACAAGA  478

seq1  TGTCTCAATAAAGAAAATGGTCACCAAATGCTATGTTTTTGGCCACATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAATAAAGAAAATGGTCACCAAATGCTATGTTTTTGGCCACATTA  528

seq1  AAAAATATTTTTGCCTGGCAGCAGGGCCAGTTCCTTTATAAGCCTATATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTTTGCCTGGCAGCAGGGCCAGTTCCTTTATAAGCCTATATG  578

seq1  TAAATCCTAATCTGATTTAATTTCTCCCTCTACTTTCCCTTTAGCTGGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTAATCTGATTTAATTTCTCCCTCTACTTTCCCTTTAGCTGGGC  628

seq1  TGTGCAAGGCTGCTCTAAAGTTGCAGAGCATTGTGTGACTACAGAGCACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAGGCTGCTCTAAAGTTGCAGAGCATTGTGTGACTACAGAGCACT  678

seq1  GTGTATAGATTCACGGTATAGGAAAGCTGTAGCTTCAAACCTTGACAACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAGATTCACGGTATAGGAAAGCTGTAGCTTCAAACCTTGACAACC  728

seq1  ACAGCAAGCTACTTAGCATGAGAGCAGTAAAATGCCCTTTGGATGTAAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGCTACTTAGCATGAGAGCAGTAAAATGCCCTTTGGATGTAAGC  778

seq1  AGATAAAGTCAGTACTGTGAGACATCTGAGGCCAGCGGGCACCTCAGTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGTCAGTACTGTGAGACATCTGAGGCCAGCGGGCACCTCAGTGC  828

seq1  CGTCAAAGGGACACATCTACTGTAAACCTACAAGAGATGGCTCATATCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAAAGGGACACATCTACTGTAAACCTACAAGAGATGGCTCATATCTA  878

seq1  CTACTACCAACCACACATGTTGATAAGCAAGTATTACATAGGCAGCACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACCAACCACACATGTTGATAAGCAAGTATTACATAGGCAGCACAA  928

seq1  CAGCATCTCCACACACTTGTGACAGTGTTATTTTCCTTCCTGAAATTGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTCCACACACTTGTGACAGTGTTATTTTCCTTCCTGAAATTGTA  978

seq1  TTTAACTCAAGAAAGAAGAACATGGAATCATCTAGTTTTCTCCATCACTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCAAGAAAGAAGAACATGGAATCATCTAGTTTTCTCCATCACTA  1028

seq1  ATGGACAAATGCCACCTTCAGAATTTTTCTCATCCCACTGATTTTGGAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAAATGCCACCTTCAGAATTTTTCTCATCCCACTGATTTTGGAGG  1078

seq1  AAAGTAAGACAGTTTTCTGCTACTTGAATTC  1130
      |||||||||||||||||||||||||||||||
seq2  AAAGTAAGACAGTTTTCTGCTACTTGAATTC  1109