BAC Information

Click to search

BAC

Clone NameB6Ng01-012G16
Chromosome8 (Build37)14 (Build37)
Map Location 4,099,220 - 4,099,431108,951,459 - 108,952,542
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071
Downstream geneCd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012G16.bB6Ng01-012G16.g
ACCDH847517DH847518
length7941,071
definitionDH847517|Mus musculus domesticus DNA, BAC clone: B6Ng01-012G16, 5' end.DH847518|Mus musculus domesticus DNA, BAC clone: B6Ng01-012G16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,099,220 - 4,099,431)(108,951,459 - 108,952,542)
sequence
gaattctctactttgtctccacttctcctttctctccctcccattttctc
ccaggtttgtggtccccctcgcacccacaataactgggttctgctggaca
ggacaactactggtgctggtatatgggatgagaaagtgaatagattgggg
gaaagctaggaggggaagatctatgtgacccactagaaacagaatgggga
ggcacagtaagatctaatgcagagatggtgacaagactaagggactgaca
gcaatggcttgtgctgtaagatcaagaatcgacaaatgggacctcataaa
atttcaaatcttttgtaaggtaaaagatactctcaataagacaaaaaggc
taccatcagattgggaaatgatttttaccaatcctaaatctgataggtga
ctactatccaatatatacaaagagctcaagaagctgaactccagaaatac
aagtaaccccattaaaaatggggtacagagctaaacaaagaattctcaac
tgaggaatatggaaggactgagaagcacttgaaaaaatgttcaacatctt
taatcatgagggaaatgcaaatcaaaacaaccctgagatttcacctctac
cagtcagaatggctagggtcaaaaattcaggtgacagcagatgctggtga
ggatatggaggaagaggaacactcctccagtgttggtgggattgcaagct
tgtacaaccactctgcgaatcaatctggcagttcctcagaaaactggaca
tagtagtacatgaagatccaacaatatctatcatgggcatatac
gaattccatgtcacccactcctggttttagaatccagtgcttaaggcagt
attgaaacttgtcaattctaaaataattactcacctcctccatgtttaaa
tattgcagaattttatacctgtttaagcacatgaaaaaataatcattgta
tgtcctgagtcctataaaatattcctgactcttaggcggcactttcaaac
tcatatattattttctttatcttgaaaagaactcaattttataaattagg
taggacattaggcatgcagagattttctgctggtagatttgcatatgcta
atatttcattaaatacaaagtatcatttttaatattattgcacagctaag
ctcaatttccagaaactagtaaatatcttatggaatattatatcattaat
ataatctgatacttatattacaccaagataattagacatttagaatgatg
aataagaatacaaaatagctggctatcttaaaatattgaagaacacctta
tttgcatgcatagacaggacttgacttttctttgtcttttacagttctat
cctacttaactgccttgatccagtggctgaagctcagctggcaagaattc
tctggctttgtaaaaacagtttgccctagtgaatattgagtgggaaccat
aggacaagagaatcccacaaagataatagagagaaaaggccagacatgga
tttcaaaatgatttgtgtctctagaaaatatatactaaaatgtccggcta
tttaaattaggagatctacccacattaatgcaaatactattgttattatg
tatttctaatagaaagttatcagattttcggggaaagtcagagactgata
acattttgtttctcatttctaagatgaaatttttaaatgtgtcattttcc
tacattcaaatgtttagcagttcagtggtttttcatgtcattaattgata
acacgcatatatagtctatcctcgagcactggcttcttctgtgtctttca
tttaatatgcaatcccttcttttatgagtttcatcatttcaaaataattg
ttatcatcatttacatagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_4099220_4099431
seq2: B6Ng01-012G16.b_44_594

seq1  TCTACTTGGTCTCCACTCCTCTTTTCTCTCCCATCCCATTTTCTCCCAGG  50
      ||||||| ||||||||| ||| |||||||||| |||||||||||||||||
seq2  TCTACTTTGTCTCCACTTCTCCTTTCTCTCCC-TCCCATTTTCTCCCAGG  49

seq1  TTTGCAGTCCCCCTTGCACCCATGAATAACTGAGTCCTGCTGG-------  93
      ||||  |||||||| |||||||  |||||||| || |||||||       
seq2  TTTGTGGTCCCCCTCGCACCCA-CAATAACTGGGTTCTGCTGGACAGGAC  98

seq1  --------------------------------------------------  93
                                                        
seq2  AACTACTGGTGCTGGTATATGGGATGAGAAAGTGAATAGATTGGGGGAAA  148

seq1  --------------------------------------------------  93
                                                        
seq2  GCTAGGAGGGGAAGATCTATGTGACCCACTAGAAACAGAATGGGGAGGCA  198

seq1  --------------------------------------------------  93
                                                        
seq2  CAGTAAGATCTAATGCAGAGATGGTGACAAGACTAAGGGACTGACAGCAA  248

seq1  -------------------------------ATGGGACATCACA------  106
                                     ||||||| ||| |      
seq2  TGGCTTGTGCTGTAAGATCAAGAATCGACAAATGGGACCTCATAAAATTT  298

seq1  --------------------------------------------------  106
                                                        
seq2  CAAATCTTTTGTAAGGTAAAAGATACTCTCAATAAGACAAAAAGGCTACC  348

seq1  --------------------------------------------------  106
                                                        
seq2  ATCAGATTGGGAAATGATTTTTACCAATCCTAAATCTGATAGGTGACTAC  398

seq1  -------------------------------------------------T  107
                                                       |
seq2  TATCCAATATATACAAAGAGCTCAAGAAGCTGAACTCCAGAAATACAAGT  448

seq1  AACCCCATTTAAAAATGGGGTACAGAGCTAAACAAAGAATTCTCAAATGC  157
      ||||||| |||||||||||||||||||||||||||||||||||||| || 
seq2  AACCCCA-TTAAAAATGGGGTACAGAGCTAAACAAAGAATTCTCAACTGA  497

seq1  GGAATACCAAATGGCTGAGATGCACCTAAAAAAAGTGTTCAACATCTTTA  207
      ||||||   || | |||||| |||| | |||||| |||||||||||||||
seq2  GGAATATGGAAGGACTGAGAAGCACTTGAAAAAA-TGTTCAACATCTTTA  546

seq1  ATCAT  212
      |||||
seq2  ATCAT  551

seq1: chr14_108951459_108952542
seq2: B6Ng01-012G16.g_63_1133

seq1  GAATTCCATGTCACCCACTCCTGGTTTTAGAATCCAGTGCTTAAGGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCACCCACTCCTGGTTTTAGAATCCAGTGCTTAAGGCAGT  50

seq1  ATTGAAACTTGTCAATTCTAAAATAATTACTCACCTCCTCCATGTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACTTGTCAATTCTAAAATAATTACTCACCTCCTCCATGTTTAAA  100

seq1  TATTGCAGAATTTTATACCTGTTTAAGCACATGAAAAAATAATCATTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAGAATTTTATACCTGTTTAAGCACATGAAAAAATAATCATTGTA  150

seq1  TGTCCTGAGTCCTATAAAATATTCCTGACTCTTAGGCGGCACTTTCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGAGTCCTATAAAATATTCCTGACTCTTAGGCGGCACTTTCAAAC  200

seq1  TCATATATTATTTTCTTTATCTTGAAAAGAACTCAATTTTATAAATTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTATTTTCTTTATCTTGAAAAGAACTCAATTTTATAAATTAGG  250

seq1  TAGGACATTAGGCATGCAGAGATTTTCTGCTGGTAGATTTGCATATGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACATTAGGCATGCAGAGATTTTCTGCTGGTAGATTTGCATATGCTA  300

seq1  ATATTTCATTAAATACAAAGTATCATTTTTAATATTATTGCACAGCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATTAAATACAAAGTATCATTTTTAATATTATTGCACAGCTAAG  350

seq1  CTCAATTTCCAGAAACTAGTAAATATCTTATGGAATATTATATCATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTTCCAGAAACTAGTAAATATCTTATGGAATATTATATCATTAAT  400

seq1  ATAATCTGATACTTATATTACACCAAGATAATTAGACATTTAGAATGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTGATACTTATATTACACCAAGATAATTAGACATTTAGAATGATG  450

seq1  AATAAGAATACAAAATAGCTGGCTATCTTAAAATATTGAAGAACACCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATACAAAATAGCTGGCTATCTTAAAATATTGAAGAACACCTTA  500

seq1  TTTGCATGCATAGACAGGACTTGACTTTTCTTTGTCTTTTACAGTTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGCATAGACAGGACTTGACTTTTCTTTGTCTTTTACAGTTCTAT  550

seq1  CCTACTTAACTGCCTTGATCCAGTGGCTGAAGCTCAGCTGGCAAGAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTAACTGCCTTGATCCAGTGGCTGAAGCTCAGCTGGCAAGAATTC  600

seq1  TCTGGCTTTGTAAAAACAGTTTGCCCTAGTGAATATTGAGTGGGAACCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTTGTAAAAACAGTTTGCCCTAGTGAATATTGAGTGGGAACCAT  650

seq1  AGGACAAGAGAATCCCACAAAGATAATAGAGAGAAAAGGCCAGACATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGAGAATCCCACAAAGATAATAGAGAGAAAAGGCCAGACATGGA  700

seq1  TTTCAAAATGATTTGTGTCTCTAGAAAATATATACTAAAATGTCCGGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATGATTTGTGTCTCTAGAAAATATATACTAAAATGTCCGGCTA  750

seq1  TTTAAATTAGGAGATCTACCCACATTAATGCAAATACTATTGTTATTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTAGGAGATCTACCCACATTAATGCAAATACTATTGTTATTATG  800

seq1  TATTTCTAATAGAAAGTTATCAGATTTTCGGGGAAAGTCAGAGACTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAATAGAAAGTTATCAGATTTTCGGGGAAAGTCAGAGACTGATA  850

seq1  ACATTTTGTTTCTCATTTCTAAGATGAAATTTTTAAATGTGTCATTTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGTTTCTCATTTCTAAGATGAAATTTTTAAATGTGTCATTTTCC  900

seq1  TACATTCAAATGTTTAGCAGTTCAGTGGGTTTTTCAATGTCATTAATTGA  950
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TACATTCAAATGTTTAGCAGTTCAGT-GGTTTTTC-ATGTCATTAATTGA  948

seq1  TAACAAGGCATATATAGTCTATCCTCGAGCACTGGCTTCTTCTGTGTCTT  1000
      |||| | |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAC-ACGCATATATAGTCTATCCTCGAGCACTGGCTTCTTCTGTGTCTT  997

seq1  TCCATTTATATGCAAATCCCTTCTTTTTATGGAGGTTTCATCAATTTCAA  1050
      ||  || |||||| ||||||||| |||||||   |||||||| |||||||
seq2  TCATTTAATATGC-AATCCCTTC-TTTTATG--AGTTTCATC-ATTTCAA  1042

seq1  AAATAAATTGTATATCAATCATTTAACATAGAAA  1084
      ||   |||||| |||| ||||||| |||||||||
seq2  AA--TAATTGT-TATC-ATCATTT-ACATAGAAA  1071