BAC Information

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BAC

Clone NameB6Ng01-012K17
Chromosome8 (Build37)6 (Build37)
Map Location 17,835,617 - 17,836,81518,835,988 - 18,836,516
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCsmd1
Downstream geneLOC665638, LOC100040466, Mcph1, Angpt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012K17.bB6Ng01-012K17.g
ACCDH847700DH847701
length1,198661
definitionDH847700|Mus musculus domesticus DNA, BAC clone: B6Ng01-012K17, 5' end.DH847701|Mus musculus domesticus DNA, BAC clone: B6Ng01-012K17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,835,617 - 17,836,815)(18,835,988 - 18,836,516)
sequence
gaattcatccttgtgctgatgaagcatgcccagcaccatggtcttgggca
atgatatatgctcaccccaaaagcccttacccaccccaaaggtttaaata
gacattgttttatttccatgaaatgagacgtgtcatggaagctacctctg
ttctccatgcactcatctctgccggaagtctcctctgctcctggtgattc
taccctgctgcccctctcagatcgcaccattgaggcaggagaaaaggaaa
ggaagagtctaagcagctatgtgagtggtaggtggagtgtcactcaaact
ggtggagaagttgatggctcagagctccccgcgtacctgtcagtgctatt
tcactcagggtgtgtggagcaaaggtggcatctaggacttgagagaaagc
tatttgagcaacagcagaggatgttgagcagttagttgtcaggggaatcc
ccagcataaagtgttaaagggacagtgggagcagggatctggcctcatga
tgacaaaatgagcctcgcagaggccatgtttcttataatgtaaaacttct
gcaccagtgatgtcatgtggattggcaacagtcattttcgttcagtactt
ctgactttcaccgtcatcttcaagggctcctgcagaaggcatcctctctt
gtctatcaatctagaaagacatttaaagggcacatagtcctaaggctttt
ttctgttaatttatttttaatcaaaattttacatctaaatttgaaacagt
atttaataaacattattgacaacaggcacacacacttttatacacacaca
tactgatataaacacacacacaaacatgcatttatacacacaaaattata
aaaatgcatacacagacacacaaagcacacatacatgcacacacaaacac
aacactcacactcacatacacacaaagcccattacacactttgatattag
aagcccaccttctagtgagcataccttgggtggttctgctggcttggcct
ctatacattcaatagacagaagttctgcagtggatatgacactggggcag
ctctttaaaagagtactgggtgagctgaacaaaatgacttgggactgggt
gacaaccagatcctcagtcaagtgtctctccaagggtccaggtaggcata
actctacatgctgaggtagaccatttcttgtgaagaatccgttctggg
gaattcagttagctattctggcctttgtaggcaatgaaagtgtgaggtaa
acgtacatacatgcagatgacatgcccagacaaactttcaaaatattaat
attttaaagttaaaatctaaataacatttgagttcttttgtgattgggtt
acctcactcaggataatgccctccaggtccaaccatttgcctaggaattt
cataaattcattctttttaatagctgagtagtactccattgtgtaaatgt
accacattttttgtatccattcctctgttgagggacatctgggttctttc
cagcttctggcgattataaataaagctgctatgaacatagtggagcatgt
ttcttttttactagttggaacatcttctggatatatgcccaggagaggta
ttgcaggatcctccagtagcaccatgtccaattttctgagaaactgccag
actgatttccagagtggttgtacaagcttgcaatcccaccaacaatggag
gagtgttcctctttctccacatcctcgccagcatctgctgtcacctgaat
ttttgatcttagctattctgactggtgtgagatagaatctcagggttgtt
ttgatttgcatttccctgatgattaaggatgctgaacattttttcaggtg
cttctcagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17835617_17836815
seq2: B6Ng01-012K17.b_43_1240 (reverse)

seq1  CCCAGACAGGATCTCTTCACAAGAATGGGTCTGGCCTCAGCATGTTGAGT  50
      ||||||  |||| ||||||||||||  |||||  ||||||||||| ||||
seq2  CCCAGAACGGAT-TCTTCACAAGAAATGGTCT-ACCTCAGCATGTAGAGT  48

seq1  TATGCCTACCTGCA-CCTTGGAG-GACAC-TGACTGAGAATCTGGTTGTC  97
      |||||||||||| | |||||||| ||||| |||||||| |||||||||||
seq2  TATGCCTACCTGGACCCTTGGAGAGACACTTGACTGAGGATCTGGTTGTC  98

seq1  ACCAAGT-CCAAGTGCATTTTG-TCAGCTCAACCAGTACTCTTTAAAGGA  145
      ||| ||| |||||| ||||||| |||||||| |||||||||||| || ||
seq2  ACCCAGTCCCAAGT-CATTTTGTTCAGCTCACCCAGTACTCTTTTAAAGA  147

seq1  GCTGCCCCAGTGTCAATATCCACTGCAGAAC-TCTGTCTATTTGAATGTA  194
      |||||||||||||| |||||||||||||||| |||||||| |||||||||
seq2  GCTGCCCCAGTGTC-ATATCCACTGCAGAACTTCTGTCTA-TTGAATGTA  195

seq1  TAAGAGG-CAAGCCAAGCAGAA-CAACCAAGGTATGCTCACTAGAAGGTG  242
      | ||||| |||||| ||||||| || ||||||||||||||||||||||||
seq2  T-AGAGGCCAAGCC-AGCAGAACCACCCAAGGTATGCTCACTAGAAGGTG  243

seq1  GGCTTCTAAATATCAAAGTGTGTAAATGGGCTTTGTGTGTATGTGAGTGT  292
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  GGCTTCT-AATATCAAAGTGTGT-AATGGGCTTTGTGTGTATGTGAGTGT  291

seq1  GAGTGTTGTGTTTGTGTGTGCATGTATGTGTGCTTTGTGTGTCTGTGTAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGTGTTTGTGTGTGCATGTATGTGTGCTTTGTGTGTCTGTGTAT  341

seq1  GCATTTTTATAATTTTGTGTGTATAAATGCATGTTTGTGTGTGTGTTTAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTATAATTTTGTGTGTATAAATGCATGTTTGTGTGTGTGTTTAT  391

seq1  ATCAGTATGTGTGTGTATAAAAGTGTGTGTGCCTGTTGTCAATAATGTTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATGTGTGTGTATAAAAGTGTGTGTGCCTGTTGTCAATAATGTTT  441

seq1  ATTAAATACTGTTTCAAATTTAGATGTAAAATTTTGATTAAAAATAAATT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATACTGTTTCAAATTTAGATGTAAAATTTTGATTAAAAATAAATT  491

seq1  AACAGAAAAAAGCCTTAGGACTATGTGCCCTTTAAATGTCTTTCTAGATT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAAAAGCCTTAGGACTATGTGCCCTTTAAATGTCTTTCTAGATT  541

seq1  GATAGACAAGAGAGGATGCCTTCTGCAGGAGCCCTTGAAGATGACGGTGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACAAGAGAGGATGCCTTCTGCAGGAGCCCTTGAAGATGACGGTGA  591

seq1  AAGTCAGAAGTACTGAACGAAAATGACTGTTGCCAATCCACATGACATCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGAAGTACTGAACGAAAATGACTGTTGCCAATCCACATGACATCA  641

seq1  CTGGTGCAGAAGTTTTACATTATAAGAAACATGGCCTCTGCGAGGCTCAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCAGAAGTTTTACATTATAAGAAACATGGCCTCTGCGAGGCTCAT  691

seq1  TTTGTCATCATGAGGCCAGATCCCTGCTCCCACTGTCCCTTTAACACTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATCATGAGGCCAGATCCCTGCTCCCACTGTCCCTTTAACACTTT  741

seq1  ATGCTGGGGATTCCCCTGACAACTAACTGCTCAACATCCTCTGCTGTTGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGGATTCCCCTGACAACTAACTGCTCAACATCCTCTGCTGTTGC  791

seq1  TCAAATAGCTTTCTCTCAAGTCCTAGATGCCACCTTTGCTCCACACACCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGCTTTCTCTCAAGTCCTAGATGCCACCTTTGCTCCACACACCC  841

seq1  TGAGTGAAATAGCACTGACAGGTACGCGGGGAGCTCTGAGCCATCAACTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAAATAGCACTGACAGGTACGCGGGGAGCTCTGAGCCATCAACTT  891

seq1  CTCCACCAGTTTGAGTGACACTCCACCTACCACTCACATAGCTGCTTAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCAGTTTGAGTGACACTCCACCTACCACTCACATAGCTGCTTAGA  941

seq1  CTCTTCCTTTCCTTTTCTCCTGCCTCAATGGTGCGATCTGAGAGGGGCAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTTCCTTTTCTCCTGCCTCAATGGTGCGATCTGAGAGGGGCAG  991

seq1  CAGGGTAGAATCACCAGGAGCAGAGGAGACTTCCGGCAGAGATGAGTGCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGAATCACCAGGAGCAGAGGAGACTTCCGGCAGAGATGAGTGCA  1041

seq1  TGGAGAACAGAGGTAGCTTCCATGACACGTCTCATTTCATGGAAATAAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACAGAGGTAGCTTCCATGACACGTCTCATTTCATGGAAATAAAA  1091

seq1  CAATGTCTATTTAAACCTTTGGGGTGGGTAAGGGCTTTTGGGGTGAGCAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTATTTAAACCTTTGGGGTGGGTAAGGGCTTTTGGGGTGAGCAT  1141

seq1  ATATCATTGCCCAAGACCATGGTGCTGGGCATGCTTCATCAGCACAAGGA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTGCCCAAGACCATGGTGCTGGGCATGCTTCATCAGCACAAGGA  1191

seq1  TGAATTC  1199
      |||||||
seq2  TGAATTC  1198

seq1: chr6_18835988_18836516
seq2: B6Ng01-012K17.g_199_727 (reverse)

seq1  TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA  50
      |||| |||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAA  50

seq1  ATGGAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC  100
      ||| ||||||||||||||||||||||| | ||||||||||||||||| ||
seq2  ATGCAAATCAAAACAACCCTGAGATTCTATCTCACACCAGTCAGAATAGC  100

seq1  TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAA  150
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA  150

seq1  GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTC  200

seq1  TGGAAATCCGTCTGGCGGTTGCTCAGAAAATTGGACATAGTACTACTGGA  250
      |||||||| ||||||| ||| ||||||||||||||||| || ||||||||
seq2  TGGAAATCAGTCTGGCAGTTTCTCAGAAAATTGGACATGGTGCTACTGGA  250

seq1  GGATCCAGCATTACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG  300
      |||||| ||| ||||||||||||||||||||||||||||||  |||||| 
seq2  GGATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTA  300

seq1  GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA  350
      |||| || || |||||||||||||||||||||||||| ||||||||||| 
seq2  GTAAAAAAGAAACATGCTCCACTATGTTCATAGCAGCTTTATTTATAATC  350

seq1  GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA  400
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACA  400

seq1  GAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGA  450
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGA  450

seq1  ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC  500
      ||||||||||||||||||||| ||||||| |||||||||||||||| |||
seq2  ATGAATTTATGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATTATC  500

seq1  CTGAGTGAGGTAACACATTCACAAAGGAA  529
      |||||||||||||| || ||||||| |||
seq2  CTGAGTGAGGTAACCCAATCACAAAAGAA  529