BAC Information

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BAC

Clone NameB6Ng01-013E03
Chromosome8 (Build37)
Map Location 88,784,425 - 88,964,550
singlet/doubletdoublet
Overlap genenone
Upstream geneVps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
Downstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013E03.bB6Ng01-013E03.g
ACCDH848123DH848124
length1,096396
definitionDH848123|Mus musculus domesticus DNA, BAC clone: B6Ng01-013E03, 5' end.DH848124|Mus musculus domesticus DNA, BAC clone: B6Ng01-013E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,784,425 - 88,785,520)(88,964,150 - 88,964,550)
sequence
gaattccacagcctttcctctctaaggacacgatctcaaattcctccaca
accaagcatctgtcatcctcctagtctccattcaaacatctccgtgtctg
ggaaacatttctggacaccatgtgctccagcatcaggcacacacacacac
acacacacacacacacaaatcctctagttcatttaatgactgtattctta
cgaatgaaattaaatttttcttgagatcaattctctgaaagtcaatatac
ccttggggagtaaccaagtttgttttcagggttgggactttttttttctt
aattgaaaaagaatctctatacaaataatttgattgggtatttcccatcc
cccaaactccctagatcctctccatccaactttaggttctttccctctgc
ctttaaaacaaaacaaaacaaaacaaaacaaaaaacaagaaacatatata
catacatgtaaaaccacaaaattagaaatgaaaataagcaagcaaatgac
tgatcagacaaagaatgcccaaacaaagtgctatgagacataggtccaaa
aacataccacagagtctgttgtgtgctggacagacagactcctgggcatg
aagcatctcctgcactgtgatgcttatactcagtgaggctccattagaga
aaattaattttcctttgtcacagatagatattcttctctcagttctgaga
ccttgtctggtttgaatctgtgcatgtccagtgcacgctgccacagtctc
tgtgagttcgtgtgcaacagtcttgtgtctggagaccactgtctccttgg
agtcatctgagtcttacaatctttctgtctccccttccacttagattcct
gagccttgagggggaggggcttgatggagacatctatttgacagtctctc
actctttgtatattgaggtttggggttctggatgcttccacttcacgtca
tgctgcagttcccagcatcatgatccttgacatcagcccagacattggtt
catcagctaataaagatagatctggatccttttaaattaagattggagca
ttcgagcactggaacagttgtaggtccactttccactttcaacttt
caccctgaaggattaagggtttgtgctaaggctgagccacaccacaacca
aaaatgtggttttccagtaaacaacacaatcttggggttcacaggataat
caaatatcctgccacacaaatgcttataggctagctatttcagtgacatc
attgaaagggttttgagttcggggcctgttttggggatttcgttttgtag
tgctggtcaaggcccaaattctgactcgccagggcaagaataatagcaac
tttggaggttttctgcactcctgctaacaagtttataccatcttcttgag
caatggatagtctttcaaggttgttatgcaaagtatgtttgtcctgccaa
tgaagtatctgtggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_88784425_88785520
seq2: B6Ng01-013E03.b_46_1141

seq1  GAATTCCACAGCCTTTCCTCTCTAAGGACACGATCTCAAATTCCTCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCCTTTCCTCTCTAAGGACACGATCTCAAATTCCTCCACA  50

seq1  ACCAAGCATCTGTCATCCTCCTAGTCTCCATTCAAACATCTCCGTGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCATCTGTCATCCTCCTAGTCTCCATTCAAACATCTCCGTGTCTG  100

seq1  GGAAACATTTCTGGACACCATGTGCTCCAGCATCAGGCACACACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATTTCTGGACACCATGTGCTCCAGCATCAGGCACACACACACAC  150

seq1  ACACACACACACACACAAATCCTCTAGTTCATTTAATGACTGTATTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACAAATCCTCTAGTTCATTTAATGACTGTATTCTTA  200

seq1  CGAATGAAATTAAATTTTTCTTGAGATCAATTCTCTGAAAGTCAATATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGAAATTAAATTTTTCTTGAGATCAATTCTCTGAAAGTCAATATAC  250

seq1  CCTTGGGGAGTAACCAAGTTTGTTTTCAGGGTTGGGACTTTTTTTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGAGTAACCAAGTTTGTTTTCAGGGTTGGGACTTTTTTTTTCTT  300

seq1  AATTGAAAAAGAATCTCTATACAAATAATTTGATTGGGTATTTCCCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAAAAGAATCTCTATACAAATAATTTGATTGGGTATTTCCCATCC  350

seq1  CCCAAACTCCCTAGATCCTCTCCATCCAACTTTAGGTTCTTTCCCTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACTCCCTAGATCCTCTCCATCCAACTTTAGGTTCTTTCCCTCTGC  400

seq1  CTTTAAAACAAAACAAAACAAAACAAAACAAAAAACAAGAAACATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAACAAAACAAAACAAAACAAAACAAAAAACAAGAAACATATATA  450

seq1  CATACATGTAAAACCACAAAATTAGAAATGAAAATAAGCAAGCAAATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTAAAACCACAAAATTAGAAATGAAAATAAGCAAGCAAATGAC  500

seq1  TGATCAGACAAAGAATGCCCAAACAAAGTGCTATGAGACATAGGTCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGACAAAGAATGCCCAAACAAAGTGCTATGAGACATAGGTCCAAA  550

seq1  AACATACCACAGAGTCTGTTGTGTGCTGGACAGACAGACTCCTGGGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACCACAGAGTCTGTTGTGTGCTGGACAGACAGACTCCTGGGCATG  600

seq1  AAGCATCTCCTGCACTGTGATGCTTATACTCAGTGAGGCTCCATTAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTCCTGCACTGTGATGCTTATACTCAGTGAGGCTCCATTAGAGA  650

seq1  AAATTAATTTTCCTTTGTCACAGATAGATATTCTTCTCTCAGTTCTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTTTCCTTTGTCACAGATAGATATTCTTCTCTCAGTTCTGAGA  700

seq1  CCTTGTCTGGTTTGAATCTGTGCAGGTCCAGTGCACGCTGCCACAGTCTC  750
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTTGTCTGGTTTGAATCTGTGCATGTCCAGTGCACGCTGCCACAGTCTC  750

seq1  TGTGAGTTCGTGTGCAACAGTCTTGTGTCTGGAGACCACTGTCTCCTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTCGTGTGCAACAGTCTTGTGTCTGGAGACCACTGTCTCCTTGG  800

seq1  AGTCATCTGAGTCTTACAATCTTTCTGTCTCCCCTTCCACTTAGATTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTGAGTCTTACAATCTTTCTGTCTCCCCTTCCACTTAGATTCCT  850

seq1  GAGCCTTGAGGGGGAGGGGCTTGATGGAGACATCTTATTTGACAGTCTCT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGCCTTGAGGGGGAGGGGCTTGATGGAGACATC-TATTTGACAGTCTCT  899

seq1  CACTCTTTGTATATTGAGGTTTGGGGTTCTGGATGCTTCCACTTCACGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTTGTATATTGAGGTTTGGGGTTCTGGATGCTTCCACTTCACGTC  949

seq1  ATGCTGCAGTTCCCAAGCATCATGATCCTTGACATCAAGCCCAGACATTG  1000
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  ATGCTGCAGTTCCC-AGCATCATGATCCTTGACATC-AGCCCAGACATTG  997

seq1  GTTCATCAGCTAAATAAAGATAGAATCT-GATCTCTTTAAAATTAAGATT  1049
      ||||||||||| ||||||||||| |||| |||| |||| |||||||||||
seq2  GTTCATCAGCT-AATAAAGATAG-ATCTGGATC-CTTTTAAATTAAGATT  1044

seq1  TGAGCATTCTGAGCACTTGGACCAGGTGTAGGCTCCACTTT-CACTTT--  1096
       |||||||| |||||| |||| ||| |||||| |||||||| ||||||  
seq2  GGAGCATTC-GAGCAC-TGGAACAGTTGTAGG-TCCACTTTCCACTTTCA  1091

seq1  -----  1096
           
seq2  ACTTT  1096

seq1: chr8_88964150_88964550
seq2: B6Ng01-013E03.g_69_469 (reverse)

seq1  ACACACACACACACACACACACACACACACTCCACAGATACTTCATTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACTCCACAGATACTTCATTGGC  50

seq1  AGGACAAACATACTTTGCATAACAACCTTGAAAGACTATCCATTGCTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAACATACTTTGCATAACAACCTTGAAAGACTATCCATTGCTCAA  100

seq1  GAAGATGGTATAAACTTGTTAGCAGGAGTGCAGAAAACCTCCAAAGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGTATAAACTTGTTAGCAGGAGTGCAGAAAACCTCCAAAGTTGC  150

seq1  TATTATTCTTGCCCTGGCGAGTCAGAATTTGGGCCTTGACCAGCACTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTCTTGCCCTGGCGAGTCAGAATTTGGGCCTTGACCAGCACTACA  200

seq1  AAACGAAATCCCCAAAACAGGCCCCGAACTCAAAACCCTTTCAATGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAAATCCCCAAAACAGGCCCCGAACTCAAAACCCTTTCAATGATGT  250

seq1  CACTGAAATAGCTAGCCTATAAGCATTTGTGTGGCAGGATATTTGATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAATAGCTAGCCTATAAGCATTTGTGTGGCAGGATATTTGATTAT  300

seq1  CCTGTGAACCCCAAGATTGTGTTGTTTACTGGAAAACCACATTTTTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAACCCCAAGATTGTGTTGTTTACTGGAAAACCACATTTTTGGTT  350

seq1  GTGGTGTGGCTCAGCCTTAGCACAAACCCTTAATCCTTCAGGGTGGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGGCTCAGCCTTAGCACAAACCCTTAATCCTTCAGGGTGGAATT  400

seq1  C  401
      |
seq2  C  401