BAC Information

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BAC

Clone NameB6Ng01-013N04
Chromosome8 (Build37)
Map Location 17,297,235 - 17,451,534
singlet/doubletdoublet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013N04.bB6Ng01-013N04.g
ACCDH848539DH848540
length1,087932
definitionDH848539|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N04, 5' end.DH848540|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,450,434 - 17,451,534)(17,297,235 - 17,298,165)
sequence
gaattccatgcaatcacatcatttgatatcaacttctatggtaacacata
tggaatttataaataatggtggatttttaccgttaattattttgatagct
atgttggtcactaatattttgcttcaatgaggaagattttgaacatggta
agtattagtttggtttagatgctatttaatgcttttcttagggaaaggaa
attgtttggctaagtcacacatagtcttatgtttcaatttctgtaattca
tagtaaaatttgaatgtgcattgtaataacttaaatgctactgaagagct
gttgatgtagaacttttgccatgtaaatctgtgactaatgatgcttaaat
cccatttctctaacaatatacaagaataaaataatgcttgtgattatcag
tattattcaggctagtgcaagtgctaagaagctatttttttctgtgtctt
attgcctcttctttcttgtttttaaatctcccgtgtgtttgcattacagc
aataccactttaataaagtctacatttgtggatttcttatttgatgtttc
taagttgtctgtttaacttatttagtggctttagtatcaatgaaaacttg
aaacatgtatctccgcaagtactcacacaggcaatcaaagagctgtatgt
tcattgccctcagaaagtggtatggttaaaaaaacagttggaagatggct
cagcacataggaatgcttgttctttaagcatgaggaactaaaatcaaatt
cgcagaacccatgcaaaaagtttggcattgtgtgtgctacctgtcatcag
agcattctcagcagtgggggcagaagggttttggagctttctacatgaca
acttagtttaagattagtgagagatcttgtctcccgactataacatggaa
ggtgatagagtggatcaagcacttcctcagtatatatggtacatgtgcac
acacaacatacacatggccacacatcatgatacaaatatacacaaacagt
gaaagcaaatttctattcattaagaaaactagctgatgctgtcagtaggc
ttggtagggcctcctatcttattaagagaaaaagtcc
gaattccctcttattacctttagtgagggcccaaaaggtaaacttatatt
gggattttctggctatgaagggttttttgtttttgttttttgtttgtttg
tttgtttgtttacatgtttgaaagctctaactctttcttattcacagaaa
cacgcttttaaaagtcaggaagtacttgagagataggcgttctttagcaa
aatgtgatcatttcgagtgggtattggcctttgagtaagtgagaatattt
ccctttgtcttttattaaatagcagtgatcatctcgaggggttggcttcc
ctagaacttcatgctagaaaaaagcagaactaaagacgtgatgttccggg
ggtggagcgtggggagaagttgtgccaggaatagatgtcatgcaattctg
gcaacttgtcagaccacatatagcaggaagggtttggatccagacaagga
catatcaatgataggcaggactcaccatcaccatgagcaaccttctgtct
tagaatcagcctgggatgctttagggatccccactgtaacccatcagcca
acaatgccaacaaatgtaacccaaccccaactctggaagctttgcctgac
tacagaagatagccagttcagactcagtatcctccattttaggagtcctc
actaatatttgccttcatagatttaaggaagcttccatttgcactaggct
ttcacaccatccccatgatctcagatgatcaccaaacccagcctctctcc
ctgaagtatgacttttaactgcctctcaaacgctagcagcggagttactg
agacaggatctaaacctgttcttctctgttgccacatcaactagttttct
agcatcaattcacttgctcaataaacttctgggtctcaccacagggaagt
attatttgggcagatctgcaaaatttcaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17450434_17451534
seq2: B6Ng01-013N04.b_44_1130 (reverse)

seq1  GGACTCTTTCTCTTAATAAGATATAGGA-GCCATACCAAACACTACTGAC  49
      ||||| ||||||||||||||  |||||| ||| |||||| | ||||||||
seq2  GGACTTTTTCTCTTAATAAG--ATAGGAGGCCCTACCAAGC-CTACTGAC  47

seq1  AGGCATTCAGCTTAGTTTTCTTAATGAATAGAAATTTTGCTTTTCACTGT  99
      | ||| ||||| |||||||||||||||||||||| ||||| |||||||||
seq2  A-GCA-TCAGC-TAGTTTTCTTAATGAATAGAAA-TTTGC-TTTCACTGT  92

seq1  TTGTGTATATTTGTATCATGTATGTGTGGCCCATGTGTATGTTTGTGTGT  149
      |||||||||||||||||||| |||||||| ||||||||||| ||||||||
seq2  TTGTGTATATTTGTATCATG-ATGTGTGG-CCATGTGTATG-TTGTGTGT  139

seq1  GCACATGTACCCATATATACCTGAGGAAAGTGCTTGATTCCACTCTATCA  199
      ||||||||| ||||||||| |||||| |||||||||| ||||||||||||
seq2  GCACATGTA-CCATATATA-CTGAGG-AAGTGCTTGA-TCCACTCTATCA  185

seq1  CCTTCCATGTTATAGTCGGGAGACAGGATCTCTCACTAATCTTAAACTAA  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCTTCCATGTTATAGTCGGGAGACAAGATCTCTCACTAATCTTAAACTAA  235

seq1  GTTGTCATGTAGAAAGCTCCAAAACCCTTCTGCCCCCACTGCTGAGAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCATGTAGAAAGCTCCAAAACCCTTCTGCCCCCACTGCTGAGAATG  285

seq1  CTCTGATGACAGGTAGCACACACAATGCCAAACTTTTTGCATGGGTTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGACAGGTAGCACACACAATGCCAAACTTTTTGCATGGGTTCTG  335

seq1  CGAATTTGATTTTAGTTCCTCATGCTTAAAGAACAAGCATTCCTATGTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTTGATTTTAGTTCCTCATGCTTAAAGAACAAGCATTCCTATGTGC  385

seq1  TGAGCCATCTTCCAACTGTTTTTTTAACCATACCACTTTCTGAGGGCAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTTCCAACTGTTTTTTTAACCATACCACTTTCTGAGGGCAAT  435

seq1  GAACATACAGCTCTTTGATTGCCTGTGTGAGTACTTGCGGAGATACATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATACAGCTCTTTGATTGCCTGTGTGAGTACTTGCGGAGATACATGT  485

seq1  TTCAATTTTTCATTGATACTAAAGCCACTAAATAAGTTAAACAGACAACT  549
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTTTCATTGATACTAAAGCCACTAAATAAGTTAAACAGACAACT  535

seq1  TAGAAACATCAAATAAGAAATCCACAAATGTAGACTTTATTAAAGTGGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACATCAAATAAGAAATCCACAAATGTAGACTTTATTAAAGTGGTA  585

seq1  TTGCTGTAATGCAAACACACGGGAGATTTAAAAACAAGAAAGAAGAGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTAATGCAAACACACGGGAGATTTAAAAACAAGAAAGAAGAGGCA  635

seq1  ATAAGACACAGAAAAAAATAGCTTCTTAGCACTTGCACTAGCCTGAATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACACAGAAAAAAATAGCTTCTTAGCACTTGCACTAGCCTGAATAA  685

seq1  TACTGATAATCACAAGCATTATTTTATTCTTGTATATTGTTAGAGAAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATAATCACAAGCATTATTTTATTCTTGTATATTGTTAGAGAAATG  735

seq1  GGATTTAAGCATCATTAGTCACAGATTTACATGGCAAAAGTTCTACATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAAGCATCATTAGTCACAGATTTACATGGCAAAAGTTCTACATCA  785

seq1  ACAGCTCTTCAGTAGCATTTAAGTTATTACAATGCACATTCAAATTTTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTTCAGTAGCATTTAAGTTATTACAATGCACATTCAAATTTTAC  835

seq1  TATGAATTACAGAAATTGAAACATAAGACTATGTGTGACTTAGCCAAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTACAGAAATTGAAACATAAGACTATGTGTGACTTAGCCAAACA  885

seq1  ATTTCCTTTCCCTAAGAAAAGCATTAAATAGCATCTAAACCAAACTAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTCCCTAAGAAAAGCATTAAATAGCATCTAAACCAAACTAATA  935

seq1  CTTACCATGTTCAAAATCTTCCTCATTGAAGCAAAATATTAGTGACCAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCATGTTCAAAATCTTCCTCATTGAAGCAAAATATTAGTGACCAAC  985

seq1  ATAGCTATCAAAATAATTAACGGTAAAAATCCACCATTATTTATAAATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTATCAAAATAATTAACGGTAAAAATCCACCATTATTTATAAATTC  1035

seq1  CATATGTGTTACCATAGAAGTTGATATCAAATGATGTGATTGCATGGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGTTACCATAGAAGTTGATATCAAATGATGTGATTGCATGGAAT  1085

seq1  TC  1101
      ||
seq2  TC  1087

seq1: chr8_17297235_17298165
seq2: B6Ng01-013N04.g_63_994

seq1  GAATTCCCTCTTATTACCTTTAGTGAGGGCCCAAAAGGTAAACTTATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTTATTACCTTTAGTGAGGGCCCAAAAGGTAAACTTATATT  50

seq1  GGGATTTTCTGGCTATGAAGGGTTTTTTGTTTTTGTTTTTTGTTTGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTCTGGCTATGAAGGGTTTTTTGTTTTTGTTTTTTGTTTGTTTG  100

seq1  TTTGTTTGTTTACATGTTTGAAAGCTCTAACTCTTTCTTATTCACAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTACATGTTTGAAAGCTCTAACTCTTTCTTATTCACAGAAA  150

seq1  CACGCTTTTAAAAGTCAGGAAGTACTTGAGAGATAGGCGTTCTTTAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTTTTAAAAGTCAGGAAGTACTTGAGAGATAGGCGTTCTTTAGCAA  200

seq1  AATGTGATCATTTCGAGTGGGTATTGGCCTTTGAGTAAGTGAGAATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATCATTTCGAGTGGGTATTGGCCTTTGAGTAAGTGAGAATATTT  250

seq1  CCCTTTGTCTTTTATTAAATAGCAGTGATCATCTCGAGGGGTTGGCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGTCTTTTATTAAATAGCAGTGATCATCTCGAGGGGTTGGCTTCC  300

seq1  CTAGAACTTCATGCTAGAAAAAAGCAGAACTAAAGACGTGATGTTCCGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTTCATGCTAGAAAAAAGCAGAACTAAAGACGTGATGTTCCGGG  350

seq1  GGTGGAGCGTGGGGAGAAGTTGTGCCAGGAATAGATGTCATGCAATTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGCGTGGGGAGAAGTTGTGCCAGGAATAGATGTCATGCAATTCTG  400

seq1  GCAACTTGTCAGACCACATATAGCAGGAAGGGTTTGGATCCAGACAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTGTCAGACCACATATAGCAGGAAGGGTTTGGATCCAGACAAGGA  450

seq1  CATATCAATGATAGGCAGGACTCACCATCACCATGAGCAACCTTCTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAATGATAGGCAGGACTCACCATCACCATGAGCAACCTTCTGTCT  500

seq1  TAGAATCAGCCTGGGATGC-TTAGGGATCCCCACTGTAACCCATCAGCCA  549
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGAATCAGCCTGGGATGCTTTAGGGATCCCCACTGTAACCCATCAGCCA  550

seq1  ACAATGCCAACAAATGTAACCCAACCCCAACTCTGGAAGCTTTGCCTGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCCAACAAATGTAACCCAACCCCAACTCTGGAAGCTTTGCCTGAC  600

seq1  TACAGAAGATAGCCAGTTCAGACTCAGTATCCTCCATTTTAGGAGTCCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGATAGCCAGTTCAGACTCAGTATCCTCCATTTTAGGAGTCCTC  650

seq1  ACTAATA-TTGCCTTCATAGATTCAAGGAAGCTTCCA-TTGCACTAGGCT  697
      ||||||| ||||||||||||||| ||||||||||||| ||||||||||||
seq2  ACTAATATTTGCCTTCATAGATTTAAGGAAGCTTCCATTTGCACTAGGCT  700

seq1  TTCACACCATCCCCATGATCTCAGATGATCACCAAACCCAGCCTCTCTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCATCCCCATGATCTCAGATGATCACCAAACCCAGCCTCTCTCC  750

seq1  CTGAAGTATGACTTTTTAAACTGCCTCTCAAACGCTAGCAGCGGAGTTAC  797
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  CTGAAGTATGACTTTT--AACTGCCTCTCAAACGCTAGCAGCGGAGTTAC  798

seq1  TGAGACAGGATCAAAACCTG-TCTTCTCTGTTGCCACAGCAATCAGGTTT  846
      |||||||||||| ||||||| ||||||||||||||||| |||  || |||
seq2  TGAGACAGGATCTAAACCTGTTCTTCTCTGTTGCCACATCAACTAGTTTT  848

seq1  CTAGCATCAATTCACCTGCCCCAAATAAACTTCTGGCT-TCAACACAGGG  895
      ||||||||||||||| ||| |  ||||||||||||| | ||| |||||||
seq2  CTAGCATCAATTCACTTGCTC--AATAAACTTCTGGGTCTCACCACAGGG  896

seq1  GAGTATTA-TTAGGCAGATCTGCAAAATTTGCAGGGA  931
       ||||||| || |||||||||||||||||| ||||||
seq2  AAGTATTATTTGGGCAGATCTGCAAAATTT-CAGGGA  932