BAC Information

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BAC

Clone NameB6Ng01-013N19
Chromosome8 (Build37)
Map Location 9,768,403 - 9,965,281
singlet/doubletdoublet
Overlap geneTmem28
Upstream genenone
Downstream geneLig4, Abhd13, Tnfsf13b, Myo16, LOC100040008, LOC384782, LOC100040507, LOC665306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013N19.bB6Ng01-013N19.g
ACCDH848569DH848570
length7321,096
definitionDH848569|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N19, 5' end.DH848570|Mus musculus domesticus DNA, BAC clone: B6Ng01-013N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,964,270 - 9,965,281)(9,768,403 - 9,769,498)
sequence
gaattcaaaataatacaccacacatatagatatatatatacatatataca
tatatctatatatgtatatatatgtgtgtatatatagatagatatcagat
aaaagataaaagagtgatagagcaggacaccctatgtcctttgctctctt
cacatggatacatatgcacttgggcagtagcactcacagacccaagcttc
tacaacatataaacacagaaacagaaacttcaaaacaaacttaaagattc
tttaaagagataagtgagagaataacattttaaaattaaaaaacaatgta
acagaattcaggaattagccttaaaaagacacgacagaaccttaactacc
taaacattcaagtaagccagcctagaaaaggccccacccttccccagcac
tgctaagaacaaagcatttcatacatgatttgggggtttggtatgcatac
agcatggtatcccgaatcacatagagcaatggttctcaaccttcctaatg
ctgtgaccctttaatacagtccttcaggtcatgatgattccccaaccatt
aaattatttttgttgccacttcataactgtaattttgctactagtatgaa
ttataatataaatatctgtgttttccagtgatcttaggtgaccctcaggt
tgagaacctttgagctggattataacaggagcttggtctgtgtattagtc
ttggaggaaggaaatgattgaagcctctttat

gaattccattccactgaggtagggattccactccactgagagtgcagact
ctctttcaaatactgagttgaccaaattaaaatcacaaggcatgtcagtg
agggcttacagtcaagggagcatgtaaagtcaaatttcatcatgaccctt
aactgtaaattatcaaaatctatggtatatgtttactagaagtagaatta
tctattatttccttatcttaatgtttcgtgcaacgatcccatcaggataa
ataacaatgcaatgtatacattagtcattcactgttagtttctatcattt
ttcttcctaggaatgaattacgggcatatttaaaacatacatagataact
taaatgttgatttatccagtaaaataaaattttcatcaatgtgatcaact
gactatttttgatggcagtctaggtttctgatcataaaaaaggaaagaaa
gatagaaaacccacaagcaaggccagattaagtttggataaactgtaagg
cgtggcttataggtcagctcttctggcttcaaataagagccctgagttaa
gcatcacactcctttgatctgtatgacccttgacccctcctccatagaaa
gcaagaggaggaggccctctggctctggaggttggggaagtcagaaaggg
aagaaaagttatgtgtctaatttcttttgaaacaactgtacaattttctt
gtgtctgtgtgtctgtgtgtgcgcgcgtgtgtgtgcatgctttttaattg
ctttgaaaagctaacacccacacctacagaaatcctgtcctcatgtcttc
ccagctaaaaggtccactgcagcttcttcatctttagggctctcttggac
tagccccatttcagcaccacggacagcgaacacccccagcagcccagggt
tgcatataccatttccaagaaactggtctagacttcccctttgctaatct
aatcagcaaggcaccacagcccttgccgactaaaatacattggtatagcc
tgtctcccgaatttagcctctagacacaaagaatgtggtccctggctatt
tcctcgagatagcaaaaaaaagcattacgtaagggtgtatgacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_9964270_9965281
seq2: B6Ng01-013N19.b_49_1068 (reverse)

seq1  GAGTCAATAGCTAGTCTGGGAAATCCAGTCTCGTCTACAGG-CAGGAATT  49
      ||||| ||||||||||||||||||||||||||||  ||||| |||||| |
seq2  GAGTC-ATAGCTAGTCTGGGAAATCCAGTCTCGTTAACAGGCCAGGAAAT  49

seq1  C-TCTCT-CCCGCTCTGGATCTGT-CCACGCC-AAACAGGTGACAGCAAT  95
      | | ||| |||||||| |||| || ||||||| ||||||| |||||||||
seq2  CTTTTCTCCCCGCTCT-GATCCGTCCCACGCCAAAACAGGGGACAGCAAT  98

seq1  CTCCAGACCTC-ATCCTAAAAAC-AAAAGGTACTCT-CATCAATTAACTC  142
      |||||| |||| ||| ||||||| ||||| |||||| |||||||||||||
seq2  CTCCAGCCCTCAATCTTAAAAACAAAAAGTTACTCTCCATCAATTAACTC  148

seq1  AAGGTTAGTGAAAACGTCTTCCATTCTGTACTGTGTACTC-TGAAGGACC  191
      ||||||||   ||||||||||||||||||||||||||||| |||| ||||
seq2  AAGGTTAGGTGAAACGTCTTCCATTCTGTACTGTGTACTCTTGAAAGACC  198

seq1  TCAATGTTCATCATTTATACCCTACAGAGTAACCAAGGACCGAGAGAGTA  241
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTTCATCATTTATACCCTACAGAGTAACCAAGGACCGAGAGAGTA  248

seq1  GATAGTTGGCATTTTAAAGGGCCCTCAACAAGATGGTGAAAT-AAGAGGC  290
      |||||||||||||||||||||||                 || |||||||
seq2  GATAGTTGGCATTTTAAAGGGCCNNNNNNNNNNNNNNNNNATAAAGAGGC  298

seq1  TTCAATCATTTCCTTCCTCCAAGACTAATACACAGACCAAGCTCCTGTTA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCATTTCCTTCCTCCAAGACTAATACACAGACCAAGCTCCTGTTA  348

seq1  TAATCCAGCTCAAAGGTTCTCAACCTGAGGGTCACCTAAGATCACTGGAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGCTCAAAGGTTCTCAACCTGAGGGTCACCTAAGATCACTGGAA  398

seq1  AACACAGATATTTATATTATAATTCATACTAGTAGCAAAATTACAGTTAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGATATTTATATTATAATTCATACTAGTAGCAAAATTACAGTTAT  448

seq1  GAAGTGGCAACAAAAATAATTTAATGGTTGGGGAATCATCATGACCTGAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCAACAAAAATAATTTAATGGTTGGGGAATCATCATGACCTGAA  498

seq1  GGACTGTATTAAAGGGTCACAGCATTAGGAAGGTTGAGAACCATTGCTCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTATTAAAGGGTCACAGCATTAGGAAGGTTGAGAACCATTGCTCT  548

seq1  ATGTGATTCGGGATACCATGCTGTATGCATACCAAACCCCCAAATCATGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTCGGGATACCATGCTGTATGCATACCAAACCCCCAAATCATGT  598

seq1  ATGAAATGCTTTGTTCTTAGCAGTGCTGGGGAAGGGTGGGGCCTTTTCTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATGCTTTGTTCTTAGCAGTGCTGGGGAAGGGTGGGGCCTTTTCTA  648

seq1  GGCTGGCTTACTTGAATGTTTAGGTAGTTAAGGTTCTGTCGTGTCTTTTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTTACTTGAATGTTTAGGTAGTTAAGGTTCTGTCGTGTCTTTTT  698

seq1  AAGGCTAATTCCTGAATTCTGTTACATTGTTTTTTAATTTTAAAATGTTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAATTCCTGAATTCTGTTACATTGTTTTTTAATTTTAAAATGTTA  748

seq1  TTCTCTCACTTATCTCTTTAAAGAATCTTTAAGTTTGTTTTGAAGTTTCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCACTTATCTCTTTAAAGAATCTTTAAGTTTGTTTTGAAGTTTCT  798

seq1  GTTTCTGTGTTTATATGTTGTAGAAGCTTGGGTCTGTGAGTGCTACTGCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTGTTTATATGTTGTAGAAGCTTGGGTCTGTGAGTGCTACTGCC  848

seq1  CAAGTGCATATGTATCCATGTGAAGAGAGCAAAGGACATAGGGTGTCCTG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCATATGTATCCATGTGAAGAGAGCAAAGGACATAGGGTGTCCTG  898

seq1  CTCTATCACTCTTTTATCTTTTATCTGATATCTATCTATATATACACACA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCACTCTTTTATCTTTTATCTGATATCTATCTATATATACACACA  948

seq1  TATATATACATATATAGATATATGTATATATGTATATATATATCTATATG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACATATATAGATATATGTATATATGTATATATATATCTATATG  998

seq1  TGTGGTGTATTATTTTGAATTC  1012
      ||||||||||||||||||||||
seq2  TGTGGTGTATTATTTTGAATTC  1020


seq1: chr8_9768403_9769498
seq2: B6Ng01-013N19.g_68_1163

seq1  GAATTCCATTCCACTGAGGTAGGGATTCCACTCCACTGAGAGTGCAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCACTGAGGTAGGGATTCCACTCCACTGAGAGTGCAGACT  50

seq1  CTCTTTCAAATACTGAGTTGACCAAATTAAAATCACAAGGCATGTCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCAAATACTGAGTTGACCAAATTAAAATCACAAGGCATGTCAGTG  100

seq1  AGGGCTTACAGTCAAGGGAGCATGTAAAGTCAAATTTCATCATGACCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTACAGTCAAGGGAGCATGTAAAGTCAAATTTCATCATGACCCTT  150

seq1  AACTGTAAATTATCAAAATCTATGGTATATGTTTACTAGAAGTAGAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAAATTATCAAAATCTATGGTATATGTTTACTAGAAGTAGAATTA  200

seq1  TCTATTATTTCCTTATCTTAATGTTTCGTGCAACGATCCCATCAGGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATTTCCTTATCTTAATGTTTCGTGCAACGATCCCATCAGGATAA  250

seq1  ATAACAATGCAATGTATACATTAGTCATTCACTGTTAGTTTCTATCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATGCAATGTATACATTAGTCATTCACTGTTAGTTTCTATCATTT  300

seq1  TTCTTCCTAGGAATGAATTACGGGCATATTTAAAACATACATAGATAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTAGGAATGAATTACGGGCATATTTAAAACATACATAGATAACT  350

seq1  TAAATGTTGATTTATCCAGTAAAATAAAATTTTCATCAATGTGATCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTGATTTATCCAGTAAAATAAAATTTTCATCAATGTGATCAACT  400

seq1  GACTATTTTTGATGGCAGTCTAGGTTTCTGATCATAAAAAAGGAAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTTTTGATGGCAGTCTAGGTTTCTGATCATAAAAAAGGAAAGAAA  450

seq1  GATAGAAAACCCACAAGCAAGGCCAGATTAAGTTTGGATAAACTGTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAAACCCACAAGCAAGGCCAGATTAAGTTTGGATAAACTGTAAGG  500

seq1  CGTGGCTTATAGGTCAGCTCTTCTGGCTTCAAATAAGAGCCCTGAGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTTATAGGTCAGCTCTTCTGGCTTCAAATAAGAGCCCTGAGTTAA  550

seq1  GCATCACACTCCTTTGATCTGTATGACCCTTGACCCCTCCTCCATAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACACTCCTTTGATCTGTATGACCCTTGACCCCTCCTCCATAGAAA  600

seq1  GCAAGAGGAGGAGGCCCTCTGGCTCTGGAGGTTGGGGAAGTCAGAAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGAGGAGGCCCTCTGGCTCTGGAGGTTGGGGAAGTCAGAAAGGG  650

seq1  AAGAAAAGTTATGTGTCTAATTTCTTTTGAAACAACTGTACAATTTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGTTATGTGTCTAATTTCTTTTGAAACAACTGTACAATTTTCTT  700

seq1  GTGTCTGTGTGTCTGTGTGTGCGCGCGTGTGTGTGCATGCTTTTTAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGTGTCTGTGTGTGCGCGCGTGTGTGTGCATGCTTTTTAATTG  750

seq1  CTTTGAAAAGCTAACACCCACACCTACAGAGATCCTGTCCTCATGTCTTC  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTTGAAAAGCTAACACCCACACCTACAGAAATCCTGTCCTCATGTCTTC  800

seq1  CCAGCT-AAAGGT-CACTGCAGCTTCTTCATCTTTAGGCCTCTCTTGGAC  848
      |||||| |||||| |||||||||||||||||||||||| |||||||||||
seq2  CCAGCTAAAAGGTCCACTGCAGCTTCTTCATCTTTAGGGCTCTCTTGGAC  850

seq1  TAGCCCCATTTCAGCACCACGGACAGCG-ACACCCCCAGCAGCCCAGGGC  897
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  TAGCCCCATTTCAGCACCACGGACAGCGAACACCCCCAGCAGCCCAGGGT  900

seq1  TGCATATACCATTTCCAAGAAACTTGTCTAGACTTCCCCTTTGCTAATCA  947
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  TGCATATACCATTTCCAAGAAACTGGTCTAGACTTCCCCTTTGCTAATC-  949

seq1  TAATCAGCAAGGTCACCACAGCCCTTGCTGACTACAATACAATGTATTAG  997
      |||||||||||| ||||||||||||||| ||||| |||||| ||   |||
seq2  TAATCAGCAAGG-CACCACAGCCCTTGCCGACTAAAATACATTGGTATAG  998

seq1  CTATTTCTCCGAATTTTAGCTCATAGCATCAAAG-ATGT-GTCACTTGCT  1045
      |  | |||||  | ||||||   |||   ||||| |||| ||| || |||
seq2  C-CTGTCTCCCGAATTTAGCCTCTAGACACAAAGAATGTGGTCCCTGGCT  1047

seq1  ATTTCTTCAGAGTATGCAAAAAAAAGCAATTACGTAA-GGTGTATGATCA  1094
      ||||| || |||   |||||||||||| ||||||||| ||||||||| ||
seq2  ATTTCCTC-GAGATAGCAAAAAAAAGC-ATTACGTAAGGGTGTATGA-CA  1094

seq1  CC  1096
      ||
seq2  CC  1096


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