BAC Information

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BAC

Clone NameB6Ng01-014C11
Chromosome8 (Build37)
Map Location 101,482,615 - 101,666,823
singlet/doubletdoublet
Overlap geneCdh8
Upstream geneLOC100041173, EG636915
Downstream geneA330008L17Rik, LOC667531, LOC100042069, LOC436054
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014C11.bB6Ng01-014C11.g
ACCDH848779DH848780
length1,1241,096
definitionDH848779|Mus musculus domesticus DNA, BAC clone: B6Ng01-014C11, 5' end.DH848780|Mus musculus domesticus DNA, BAC clone: B6Ng01-014C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,482,615 - 101,483,759)(101,665,708 - 101,666,823)
sequence
gaattctcgtgcaggtgaaaagtcaaatcagggtagtgttagaaggctct
cttctatgaagaggatcattgctccattttctcaagccgtatgagtttgt
gtaaagttcatgatagctcagtctcccagctgatatttgtaaataatgac
tttcataaataaaaaaaaaaatacaaactgtcaacctctgatctcaaggt
tttgaacctggaagttggtcttttaattaccagttttcctgatatttttc
tctgataatttcaattttttcacacatttattttcccggtttcctaatga
gaaggttattcagaatcacatattcttatatttcctgaaaccctctatca
atctgtaaaatgtgtaacgtgtaaaattcctaaataatactatgtggctc
ttctcaccaccacctccatccccctcagggttttaagtaatagagtcact
tagacttaataggcaacaaattaggtgaattatttgttgctagcccagga
gataatgctccatatttttcaaggcttgttatcctgtttaaagctatgga
gttttaattattatttcaattggatctttcaaaagaaactagaaccctaa
tcacatagtgtttttttttttctttgtcttgtttacatttagcaccaaat
ggaccctattgatctaaaggagattaggtcataccacctattgaacaaaa
gtgaggtgggggacatgtcaataagatataaaagaaatagccggcaagta
atttggtaggttttttttttctttataggaatgagagtcaaattcagtat
ctctagtacacactccagatatcccacaatggaggtacaccaacagtctt
ttgcttgtacttttgtatttgttgtgtgtttcttctataattaataaatc
tacatatgatatattatattctgttgtaaaatatcttgaattatttttct
gggagtcatggaagtggagtggttttatggatcacagaaaactagttatg
attgctcagctttctcattttctctctcataatgagaaattggaacaaaa
ataaatttcaagctaatattggaaaaattctctccctggcttgagctagg
gccagccgatccttcaatagacat
gaattcaaatgtactctaaacatttggcaataggaaaatcttgcagattc
tgtaaattctctaaagatgcaagtgtggcagaaaaaatacaagtgatatt
gctttgcatctccaatgttagggactacatatgaatacatgtcagcattt
gagaggctgggaataaaatgttgatgccatttctgttccttgagacaaaa
tgtctatcatttatcctgattaaaatctgtggcatggacagtccatacat
tataaaaataggttaaataatatgagaataaaccatatgaactcacaact
tagaaataactatgattagaaaacaatatacatatattttacagtgttgt
tatgaaatttttaattattgatcatgtaacttaagttttcatttcctctt
gccatgcaaggaaaattataagtacattcaaaagtgatattgtaatacac
attgatagtataatttatataaatttaattttacctgaaataaaagaata
atttgttatattatttctgctgttttgaaatatttaactgtaaggagtag
tgtagaactaaactatgtcacacaatagatatataaactcatgtgcacat
acatacatatctaaatgttggtatataatcagtatatgtatacatatgca
caggattttgaatatgctgcttcatttcattctcttctgggtatttaaaa
tatgctaatcttagcttctagtgaaattataagtagtttacaattgttac
tcacatactgacaattggcattttttgttcaatactttctactgtctata
agcctgaaattatcttgaacatataatctagctttcacaaattttcttaa
gatgagaatggtttcatttgcctcacattatcattgtctcataactttgt
aaattagattatttttctattaagtaaatacatgggtgaattggcattct
ttatgtactattaaataatctgaatgctcatctatcatcagtttttgcta
caattatcaattttatttttattaagatttatagcatttatcacttcttc
tttatgaaaaagttgcaatgccttgaaatttaagattttccaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_101482615_101483759
seq2: B6Ng01-014C11.b_49_1172

seq1  GAATTCTCGTGCAGGTGAAAAGTCAAATCAGGGTAGTGTTAGAAGGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGTGCAGGTGAAAAGTCAAATCAGGGTAGTGTTAGAAGGCTCT  50

seq1  CTTCTATGAAGAGGATCATTGCTCCATTTTCTCAAGCCGTATGAGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATGAAGAGGATCATTGCTCCATTTTCTCAAGCCGTATGAGTTTGT  100

seq1  GTAAAGTTCATGATAGCTCAGTCTCCCAGCTGATATTTGTAAATAATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTTCATGATAGCTCAGTCTCCCAGCTGATATTTGTAAATAATGAC  150

seq1  TTTCATAAATAAAAAAAAAAATACAAACTGTCAACCTCTGATCTCAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAATAAAAAAAAAAATACAAACTGTCAACCTCTGATCTCAAGGT  200

seq1  TTTGAACCTGGAAGTTGGTCTTTTAATTACCAGTTTTCCTGATATTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACCTGGAAGTTGGTCTTTTAATTACCAGTTTTCCTGATATTTTTC  250

seq1  TCTGATAATTTCAATTTTTTCACACATTTATTTTCCCGGTTTCCTAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAATTTCAATTTTTTCACACATTTATTTTCCCGGTTTCCTAATGA  300

seq1  GAAGGTTATTCAGAATCACATATTCTTATATTTCCTGAAACCCTCTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTATTCAGAATCACATATTCTTATATTTCCTGAAACCCTCTATCA  350

seq1  ATCTGTAAAATGTGTAACGTGTAAAATTCCTAAATAATACTATGTGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAAAATGTGTAACGTGTAAAATTCCTAAATAATACTATGTGGCTC  400

seq1  TTCTCACCACCACCTCCATCCCCCTCAGGGTTTTAAGTAATAGAGTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCACCACCTCCATCCCCCTCAGGGTTTTAAGTAATAGAGTCACT  450

seq1  TAGACTTAATAGGCAACAAATTAGGTGAATTATTTGTTGCTAGCCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTAATAGGCAACAAATTAGGTGAATTATTTGTTGCTAGCCCAGGA  500

seq1  GATAATGCTCCATATTTTTCAAGGCTTGTTATCCTGTTTAAAGCTATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGCTCCATATTTTTCAAGGCTTGTTATCCTGTTTAAAGCTATGGA  550

seq1  GTTTTAATTATTATTTCAATTGGATCTTTCAAAAGAAACTAGAACCCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATTATTATTTCAATTGGATCTTTCAAAAGAAACTAGAACCCTAA  600

seq1  TCACATAGTGTTTTTTTTTTTCTTTGTCTTGTTTACATTTAGCACCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAGTGTTTTTTTTTTTCTTTGTCTTGTTTACATTTAGCACCAAAT  650

seq1  GGACCCTATTGATCTAAAGGAGATTAGGTCATACCACCTATTGAACAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTATTGATCTAAAGGAGATTAGGTCATACCACCTATTGAACAAAA  700

seq1  GTGAGGTGGGGGACATGTCAATAAGATATAAAAGAAATAGCCGGCAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGGGGGACATGTCAATAAGATATAAAAGAAATAGCCGGCAAGTA  750

seq1  ATTTGGTAGGTTTTTTTTTTCTTTATAGGAATGAGAGTCAAATTCAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTAGGTTTTTTTTTTCTTTATAGGAATGAGAGTCAAATTCAGTAT  800

seq1  CTCTAGTACACACTCCAGATATCCCACAATGGAGGTACACCAACAGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTACACACTCCAGATATCCCACAATGGAGGTACACCAACAGTCTT  850

seq1  TTGCTTGTACTTTTGTATTTGTTGTTGTTGTTTCTTCTTATAATTAATAA  900
      |||||||||||||||||||||||||   ||||||||| ||||||||||||
seq2  TTGCTTGTACTTTTGTATTTGTTGT--GTGTTTCTTC-TATAATTAATAA  897

seq1  ATCTACATATGATATATTATATTCTGTTTGTAAAATATCTTGAATTATTT  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCTACATATGATATATTATATTCTG-TTGTAAAATATCTTGAATTATTT  946

seq1  TTCTGGGAGTCATTGGAAGT-GAGTGGTTTTATGGAACCAACAGAAAACT  999
      |||||||||||| ||||||| ||||||||||||||| |  ||||||||||
seq2  TTCTGGGAGTCA-TGGAAGTGGAGTGGTTTTATGGATC--ACAGAAAACT  993

seq1  AGTTTATGATTGGCTCAGCTTTCTCATTTTCTTCTTCTTCATAATGAAGG  1049
      || |||||||| ||||||||||||||||||| |||   |||||||||  |
seq2  AG-TTATGATT-GCTCAGCTTTCTCATTTTC-TCT--CTCATAATGA--G  1036

seq1  AAATATGGAAC-AAAATATATTTCAAGCTAAATAATTGAAAAAATTTCTC  1098
      |||| |||||| |||||| ||||||||||||   |||| ||||| |||||
seq2  AAAT-TGGAACAAAAATAAATTTCAAGCTAA--TATTGGAAAAA-TTCTC  1082

seq1  CTTCCCTTGCTTATGAGCTAGTGCATGCCAGATCATTCAATAGACAT  1145
        ||||| |||  |||||||| ||  ||| |||| ||||||||||||
seq2  --TCCCTGGCT--TGAGCTAGGGCCAGCC-GATCCTTCAATAGACAT  1124

seq1: chr8_101665708_101666823
seq2: B6Ng01-014C11.g_68_1163 (reverse)

seq1  ATTTTGTAGAAAAATCTTTAAATTTTCAAAAGCAATTTGCAACTTTTTTC  50
      |||||   | |||||| ||||||||   || |||  ||||||| ||||||
seq2  ATTTT---GGAAAATC-TTAAATTT--CAAGGCA--TTGCAAC-TTTTTC  41

seq1  ATAAAGAAGAGTTGATAAATGCTTATAAATCTTTATAAAAATTAAAATGT  100
      ||||||||||  |||||||||| |||||||||| ||||||| |||||| |
seq2  ATAAAGAAGAAGTGATAAATGC-TATAAATCTTAATAAAAA-TAAAAT-T  88

seq1  GATTAATTGGTAGGCAAAAAACTGATGAATAGATGAGCATTCAGATTATT  150
      || ||||| ||||   ||||||||||| ||||||||||||||||||||||
seq2  GA-TAATT-GTAG--CAAAAACTGATG-ATAGATGAGCATTCAGATTATT  133

seq1  TAATAAGTTACATAAAGAATGCCCAATTCACCCATGTATTTACTTTATAG  200
      |||||   ||||||||||||| ||||||||||||||||||||||| ||||
seq2  TAATA--GTACATAAAGAATG-CCAATTCACCCATGTATTTACTTAATAG  180

seq1  -AAAATAATCTAATTTACAAAGTTATGAGACAATGATAATGTGAGGCAAA  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATCTAATTTACAAAGTTATGAGACAATGATAATGTGAGGCAAA  230

seq1  TGAAACCATTCTCATCTTAAGAAAATTTTGTGAAAGCTAGATTATATGTT  299
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAAACCATTCTCATCTTAAGAAAA-TTTGTGAAAGCTAGATTATATGTT  279

seq1  CAAGATAATTTCAGGCTTATAGACAGTAGAAAGTATTGAACAAAAAATGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAATTTCAGGCTTATAGACAGTAGAAAGTATTGAACAAAAAATGC  329

seq1  CAATTGTCAGTATGTGAGTAACAATTGTAAACTACTTATAATTTCACTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTCAGTATGTGAGTAACAATTGTAAACTACTTATAATTTCACTAG  379

seq1  AAGCTAAGATTAGCATATTTTAAATACCCAGAAGAGAATGAAATGAAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGATTAGCATATTTTAAATACCCAGAAGAGAATGAAATGAAGCA  429

seq1  GCATATTCAAAATCCTGTGCATATGTATACATATACTGATTATATACCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTCAAAATCCTGTGCATATGTATACATATACTGATTATATACCAA  479

seq1  CATTTAGATATGTATGTATGTGCACATGAGTTTATATATCTATTGTGTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGATATGTATGTATGTGCACATGAGTTTATATATCTATTGTGTGA  529

seq1  CATAGTTTAGTTCTACACTACTCCTTACAGTTAAATATTTCAAAACAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTAGTTCTACACTACTCCTTACAGTTAAATATTTCAAAACAGCA  579

seq1  GAAATAATATAACAAATTATTCTTTTATTTCAGGTAAAATTAAATTTATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATATAACAAATTATTCTTTTATTTCAGGTAAAATTAAATTTATA  629

seq1  TAAATTATACTATCAATGTGTATTACAATATCACTTTTGAATGTACTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATACTATCAATGTGTATTACAATATCACTTTTGAATGTACTTAT  679

seq1  AATTTTCCTTGCATGGCAAGAGGAAATGAAAACTTAAGTTACATGATCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCTTGCATGGCAAGAGGAAATGAAAACTTAAGTTACATGATCAA  729

seq1  TAATTAAAAATTTCATAACAACACTGTAAAATATATGTATATTGTTTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAATTTCATAACAACACTGTAAAATATATGTATATTGTTTTCT  779

seq1  AATCATAGTTATTTCTAAGTTGTGAGTTCATATGGTTTATTCTCATATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAGTTATTTCTAAGTTGTGAGTTCATATGGTTTATTCTCATATTA  829

seq1  TTTAACCTATTTTTATAATGTATGGACTGTCCATGCCACAGATTTTAATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTATTTTTATAATGTATGGACTGTCCATGCCACAGATTTTAATC  879

seq1  AGGATAAATGATAGACATTTTGTCTCAAGGAACAGAAATGGCATCAACAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAATGATAGACATTTTGTCTCAAGGAACAGAAATGGCATCAACAT  929

seq1  TTTATTCCCAGCCTCTCAAATGCTGACATGTATTCATATGTAGTCCCTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCCAGCCTCTCAAATGCTGACATGTATTCATATGTAGTCCCTAA  979

seq1  CATTGGAGATGCAAAGCAATATCACTTGTATTTTTTCTGCCACACTTGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGAGATGCAAAGCAATATCACTTGTATTTTTTCTGCCACACTTGCA  1029

seq1  TCTTTAGAGAATTTACAGAATCTGCAAGATTTTCCTATTGCCAAATGTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAGAATTTACAGAATCTGCAAGATTTTCCTATTGCCAAATGTTT  1079

seq1  AGAGTACATTTGAATTC  1116
      |||||||||||||||||
seq2  AGAGTACATTTGAATTC  1096