BAC Information

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BAC

Clone NameB6Ng01-014D23
Chromosome8 (Build37)
Map Location 109,534,666 - 109,671,464
singlet/doubletdoublet
Overlap geneSntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847
Upstream geneDdx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703
Downstream geneCyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014D23.bB6Ng01-014D23.g
ACCDH848845DH848846
length9361,100
definitionDH848845|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D23, 5' end.DH848846|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,670,871 - 109,671,464)(109,534,666 - 109,535,771)
sequence
gaattctatgggaggttatactttctagacattataagaggggtccactt
cttaagtgacattcggaggaagacagaaccatttgaaacactttgaacat
caatattttagtactgttactgttatgtagtaggcaatcctctccccggg
ccgttaagtcacagagatctgaacccactccctccacgccatctgccggg
tcctgacacgcatgctctgtaatttatttcagagcatgtatcatgtgaga
tcctgccccacgagaatcattatttattttgcaagactattttattgatt
tttgtataaaaagtagaattcaaacagaaagtctccgtggcaaagcccaa
tcggttccccgggaaagagtaagaagcaaagactaaagaaatgcatccca
ggtgggcaatgggatgcattctccttctgttagaaaaaaaggcagtgagt
ggggtgctggacaggagctgatgcaaaattgcccttcagggatgagcttt
tgggggtttttttggagaggagcctttcaacccagagagtcatgacctag
ctttgactggtaaagaacattagaaaagtaatccaggcagtgatggtgca
cgcctgaagctgatgcagaggccatggaggggtgctgcttattggcttcc
tcctcatagcttgtcctgcctgcttttctacagaatccaggaccattagc
tcaggactggtaccatctacagtaggccgggctctcccccatcaacctct
aattaagaaaatgctcgggggctggaaagacggctcagtggtttagagct
cttccagaggtcctgcattcaatttccagcaaccacatggtggctcatac
ccatctgtatgagatctataccctcttctgtgtgtctgaagacagctaca
gtgtacttatatataaataaataaatctttaaaaaa
gaattcagggttatccactgctatgaataagctctaggttcacctaggct
ttatgagattgcttttttttttcttctcaagacaggatttctctgtgtag
ccctggctgtcctggaactcactctgtagaccaggctggcctcaaactca
gaaatccacctgcctctgcctcccaagtgctgggatcaaaggcgtaagcc
accacgcccgtctaagattgctttttaaaagcaaaacaaaacaaaagtga
aacatcacatctaaatgtatttaataccattgtttataaagtgtgtgtag
aactagagagatggcttagcagttaagagcactggctgctcttctagagg
acctaggttcaattcccagcatggatatggcagatcacaatgcctctaac
tcagattcctgtggatctgactccctcacacagatatatatgtaggacaa
acaccagatgtacatgaaagaaagaaaggaaaggagagagagaattacag
tgacaactcatgtttcttctccacagactatggacctgcattcttgtcca
aagccgattgtatttgtattgcacacgttcttatccgccaaagtcactcg
catgggactgcttgtgtgagcagcaagagtgaagaaagagctttgactgt
cacaagaagtatttccacctcaaaagatgaaaagaaagaaaaagcaacaa
caaagaagcacaaacagaagcccttgctcctgcctccatcacagtgcctt
cctgaggacctgcagaccactgctggaccacaacagggttttaggaaggg
ccgacctttcccacacagtcttggtcagaaatcctagaacctgttataag
ctccaaatgaaagctattgatttaccgtctatttcataatgtgatctcaa
gtaatcaggtttctttttccctgtatgaagtctgcacttgggtttctctt
tggacataacagatagccaaaggggcctcttcttttctttgtgtaggaat
catttaggttaggcttgagctcttctgggatgacctgtcctctctccggg
caagtgtgcagctgcgtcccttaagcacattcccaaaagttcttgcacca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109670871_109671464
seq2: B6Ng01-014D23.b_45_638 (reverse)

seq1  ATCACTGCCTGGATTACTTTTCTAATGTTCTTTACCAGTCAAAGCTAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGCCTGGATTACTTTTCTAATGTTCTTTACCAGTCAAAGCTAGGT  50

seq1  CATGACTCTCTGGGTTGAAAGGCTCCTCTCCAAAAAAACCCCCAAAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTCTCTGGGTTGAAAGGCTCCTCTCCAAAAAAACCCCCAAAAGCT  100

seq1  CATCCCTGAAGGGCAATTTTGCATCAGCTCCTGTCCAGCACCCCACTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGAAGGGCAATTTTGCATCAGCTCCTGTCCAGCACCCCACTCAC  150

seq1  TGCCTTTTTTTCTAACAGAAGGAGAATGCATCCCATTGCCCACCTGGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTTTTCTAACAGAAGGAGAATGCATCCCATTGCCCACCTGGGAT  200

seq1  GCATTTCTTTAGTCTTTGCTTCTTACTCTTTCCCGGGGAACCGATTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTTTAGTCTTTGCTTCTTACTCTTTCCCGGGGAACCGATTGGGC  250

seq1  TTTGCCACGGAGACTTTCTGTTTGAATTCTACTTTTTATACAAAAATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCACGGAGACTTTCTGTTTGAATTCTACTTTTTATACAAAAATCAA  300

seq1  TAAAATAGTCTTGCAAAATAAATAATGATTCTCGTGGGGCAGGATCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGTCTTGCAAAATAAATAATGATTCTCGTGGGGCAGGATCTCAC  350

seq1  ATGATACATGCTCTGAAATAAATTACAGAGCATGCGTGTCAGGACCCGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACATGCTCTGAAATAAATTACAGAGCATGCGTGTCAGGACCCGGC  400

seq1  AGATGGCGTGGAGGGAGTGGGTTCAGATCTCTGTGACTTAACGGCCCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCGTGGAGGGAGTGGGTTCAGATCTCTGTGACTTAACGGCCCGGG  450

seq1  GAGAGGATTGCCTACTACATAACAGTAACAGTACTAAAATATTGATGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATTGCCTACTACATAACAGTAACAGTACTAAAATATTGATGTTC  500

seq1  AAAGTGTTTCAAATGGTTCTGTCTTCCTCCGAATGTCACTTAAGAAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTTCAAATGGTTCTGTCTTCCTCCGAATGTCACTTAAGAAGTGG  550

seq1  ACCCCTCTTATAATGTCTAGAAAGTATAACCTCCCATAGAATTC  594
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCTTATAATGTCTAGAAAGTATAACCTCCCATAGAATTC  594

seq1: chr8_109534666_109535771
seq2: B6Ng01-014D23.g_66_1165

seq1  GAATTCAGGGTTATCCACTGCTATGAATAAGCTCTAGGTTCACCTAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTTATCCACTGCTATGAATAAGCTCTAGGTTCACCTAGGCT  50

seq1  TTATGAGATTGCTTTTTTTTTTCTTCTCAAGACAGGATTTCTCTGTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGATTGCTTTTTTTTTTCTTCTCAAGACAGGATTTCTCTGTGTAG  100

seq1  CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCA  150

seq1  GAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCGTAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCGTAAGCC  200

seq1  ACCACGCCCGTCTAAGATTGCTTTTTAAAAGCAAAACAAAACAAAAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGCCCGTCTAAGATTGCTTTTTAAAAGCAAAACAAAACAAAAGTGA  250

seq1  AACATCACATCTAAATGTATTTAATACCATTGTTTATAAAGTGTGTGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACATCTAAATGTATTTAATACCATTGTTTATAAAGTGTGTGTAG  300

seq1  AACTAGAGAGATGGCTTAGCAGTTAAGAGCACTGGCTGCTCTTCTAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGAGATGGCTTAGCAGTTAAGAGCACTGGCTGCTCTTCTAGAGG  350

seq1  ACCTAGGTTCAATTCCCAGCATGGATATGGCAGATCACAATGCCTCTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGTTCAATTCCCAGCATGGATATGGCAGATCACAATGCCTCTAAC  400

seq1  TCAGATTCCTGTGGATCTGACTCCCTCACACAGATATATATGTAGGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCCTGTGGATCTGACTCCCTCACACAGATATATATGTAGGACAA  450

seq1  ACACCAGATGTACATGAAAGAAAGAAAGGAAAGGAGAGAGAGAATTACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGATGTACATGAAAGAAAGAAAGGAAAGGAGAGAGAGAATTACAG  500

seq1  TGACAACTCATGTTTCTTCTCCACAGACTATGGACCTGCATTCTTGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTCATGTTTCTTCTCCACAGACTATGGACCTGCATTCTTGTCCA  550

seq1  AAGCCGATTGTATTTGTATTGCACACGTTCTTATCCGCCAAAGTCACTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGATTGTATTTGTATTGCACACGTTCTTATCCGCCAAAGTCACTCG  600

seq1  CATGGGACTGCTTGTGTGAGCAGCAAGAGTGAAGAAAGAGCTTTGACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGACTGCTTGTGTGAGCAGCAAGAGTGAAGAAAGAGCTTTGACTGT  650

seq1  CACAAGAAGTATTTCCACCTCAAAAGATGAAAAGAAAGAAAAAGCAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAGTATTTCCACCTCAAAAGATGAAAAGAAAGAAAAAGCAACAA  700

seq1  CAAAGAAGCACAAACAGAAGCCCTTGCTCCTGCCTCCATCACAGTGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGCACAAACAGAAGCCCTTGCTCCTGCCTCCATCACAGTGCCTT  750

seq1  CCTGAGGACCTGCAGACCACTGCTGGACCACAACAGGGTTTTAGGAAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGACCTGCAGACCACTGCTGGACCACAACAGGGTTTTAGGAAGGG  800

seq1  CCGACCTTTCCCACACAGCCTTGGTCAGAAATTCTAGAA-CTGTTATAAG  849
      |||||||||||||||||| ||||||||||||| |||||| ||||||||||
seq2  CCGACCTTTCCCACACAGTCTTGGTCAGAAATCCTAGAACCTGTTATAAG  850

seq1  CTCCAAATGAAAGCTATTGATTTACCGTCTTATTTCATAATGTGATCTCA  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTCCAAATGAAAGCTATTGATTTACCGTC-TATTTCATAATGTGATCTCA  899

seq1  AGTAATCAGGTTTC-TTTTCCCTGTTATGAAGTCTGGCACTTTGGGTTTC  948
      |||||||||||||| ||||||||| |||||||||| |||| |||||||||
seq2  AGTAATCAGGTTTCTTTTTCCCTG-TATGAAGTCT-GCAC-TTGGGTTTC  946

seq1  TCTTTGGACATAAACAGATAGCCAAAAGGGGCTCTTCTTTTCTTTGTGTA  998
      ||||||||||| |||||||||||||| ||| |||||||||||||||||||
seq2  TCTTTGGACAT-AACAGATAGCCAAAGGGGCCTCTTCTTTTCTTTGTGTA  995

seq1  GGAATCATTTGGGTATAGCCTTGAGCTCTTCCTGGGATGA-CTGT-CGCT  1046
      |||||||||| ||| ||| ||||||||||| ||||||||| |||| | ||
seq2  GGAATCATTTAGGT-TAGGCTTGAGCTCTT-CTGGGATGACCTGTCCTCT  1043

seq1  CTCCGGTGCTAGTGTGCAGCTGCCGTCCCTCAGGCACATCCCACACAGGT  1096
      |||||| || |||||||||||| ||||||| | |||||| || || | ||
seq2  CTCCGG-GCAAGTGTGCAGCTG-CGTCCCTTAAGCACATTCC-CAAAAGT  1090

seq1  CCTTGCACCA  1106
       |||||||||
seq2  TCTTGCACCA  1100