BAC Information

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BAC

Clone NameB6Ng01-014F17
Chromosome8 (Build37)
Map Location 121,304,501 - 121,394,956
singlet/doubletdoublet
Overlap geneCdh13
Upstream geneMphosph6
Downstream geneHsbp1, Mlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014F17.bB6Ng01-014F17.g
ACCDH848928DH848929
length1,089774
definitionDH848928|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F17, 5' end.DH848929|Mus musculus domesticus DNA, BAC clone: B6Ng01-014F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,304,501 - 121,305,590)(121,394,190 - 121,394,956)
sequence
gaattcactggaaatctttccattttgcccagggtttctctatcctcctc
acgtgtattcacctcatttgctatgtttccttacaaggactaaggattgt
cctctatgagaagagcactgggtcattgggtcactgggcattctatgtgt
atcctattgctaattccccaactaccatgttaaagtcttcctatggattt
agcccatggggaagcttggtgatggataaagtttaatgatatagcagaat
ggcaaagttcatattttaaaaattggtcaataaaatacagcacatagatt
cagattatgaaatcagaggaatacaatacagaatacaatgtaattataga
cagaatacaatgtaattattacctcaatcatgaaataagacataactacc
ctcccccaatgcctccgcatgtctccttccaggaacgagctccaatcttc
caggagtaactaaccctgaaatctaagactgccaaagagtgtccttgttt
agtacaaaccacacagagactctggaacacgtgggttttgacctagcctt
tgtcggtgtgttcctgacatcactccagactgtgagatgcacctgcagag
tcagatctacaggattccattttctgaaccttctcactgccctttcttct
gagaaggactttggctcctttccagtttagtgactacaaattgtgctgct
attaaaaactcttgggcatacctttgagggagtgtatccgcacatttcag
ctgggaaccaaccttactgtgaaaacgtgaggtcagctttagtagattcc
accacaaaataacaattatagagtgggtgtaaagacactggaaatttaaa
ttcatcatttatatatactccgcaatgcatcacgttagagaagtagatgt
ttaatttcttagagaaaaatctacctgggaacttaagctgtccacataag
ccaagtaggagtcttccaacctggacagatatatcatcagaatgtaaaag
agctggtaccatgggtgtcattctatagctaagtctgggggacaaaccta
cttaggaacagcctctaatataactctcattttactctt
gaattcctctgctgttttatcttaaactgaacaacatcccggaacactct
cgaccacagaccactggctgttacatttcagtgatgcagagtaaaaatgg
tacttggctggcctgaggcttctgtttccacacagggctgcttgccaggc
tggtcctggctggttcgtgtgaggttgggtttgggatgggttcctaccaa
tctctgatccgagtgacttgctgtgcttgacgtgggcaaacaaatgtaac
ttattctttcctacatggacttgggagcttataaatgcctcgtggtaccg
ttaggtccggtccccagtgagaatcctagtgacctttcataggacacatc
acttcacatgtgttgttatacttgttgcttgggggcagccactgtgacct
gtgtgaccctgggggaggtacagggagggctttggaagtgactctgtggt
tccccgggacatcgccatgcaccttttctctggtattgattctacatggc
attcattcactaggataatttcacagacactgctggacatgatgctcaga
gcatgatgctctgtgacacactcctgagtgctcgccagggactgtataca
cggcccgcacctgcccgaaccgctctttaaggtgtgggtttaatgaatta
caggcccttttaaggactgtgccaacacagtaaagcccacctaaggcgtg
cacctttggccttgcttggagttcacaaatctaagataaacatcatcact
gggacaaatcccgagacaaaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_121304501_121305590
seq2: B6Ng01-014F17.b_47_1135

seq1  GAATTCACTGGAAATCTTTCCATTTTGCCCAGGGTTTCTCTATCCTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAAATCTTTCCATTTTGCCCAGGGTTTCTCTATCCTCCTC  50

seq1  ACGTGTATTCACCTCATTTGCTATGTTTCCTTACAAGGACTAAGGATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTATTCACCTCATTTGCTATGTTTCCTTACAAGGACTAAGGATTGT  100

seq1  CCTCTATGAGAAGAGCACTGGGTCATTGGGTCACTGGGCATTCTATGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATGAGAAGAGCACTGGGTCATTGGGTCACTGGGCATTCTATGTGT  150

seq1  ATCCTATTGCTAATTCCCCAACTACCATGTTAAAGTCTTCCTATGGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATTGCTAATTCCCCAACTACCATGTTAAAGTCTTCCTATGGATTT  200

seq1  AGCCCATGGGGAAGCTTGGTGATGGATAAAGTTTAATGATATAGCAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGGGGAAGCTTGGTGATGGATAAAGTTTAATGATATAGCAGAAT  250

seq1  GGCAAAGTTCATATTTTAAAAATTGGTCAATAAAATACAGCACATAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTTCATATTTTAAAAATTGGTCAATAAAATACAGCACATAGATT  300

seq1  CAGATTATGAAATCAGAGGAATACAATACAGAATACAATGTAATTATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATGAAATCAGAGGAATACAATACAGAATACAATGTAATTATAGA  350

seq1  CAGAATACAATGTAATTATTACCTCAATCATGAAATAAGACATAACTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACAATGTAATTATTACCTCAATCATGAAATAAGACATAACTACC  400

seq1  CTCCCCCAATGCCTCCGCATGTCTCCTTCCAGGAACGAGCTCCAATCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCAATGCCTCCGCATGTCTCCTTCCAGGAACGAGCTCCAATCTTC  450

seq1  CAGGAGTAACTAACCCTGAAATCTAAGACTGCCAAAGAGTGTCCTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTAACTAACCCTGAAATCTAAGACTGCCAAAGAGTGTCCTTGTTT  500

seq1  AGTACAAACCACACAGAGACTCTGGAACACGTGGGTTTTGACCTAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAACCACACAGAGACTCTGGAACACGTGGGTTTTGACCTAGCCTT  550

seq1  TGTCGGTGTGTTCCTGACATCACTCCAGACTGTGAGATGCACCTGCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGTGTGTTCCTGACATCACTCCAGACTGTGAGATGCACCTGCAGAG  600

seq1  TCAGATCTACAGGATTCCATTTTCTGAACCTTCTCACTGCCCTTTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTACAGGATTCCATTTTCTGAACCTTCTCACTGCCCTTTCTTCT  650

seq1  GAGAAGGAC-TTGGCTCCTTTCCAGTTTAGTGACTACAAATTGTGCTGCT  699
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGACTTTGGCTCCTTTCCAGTTTAGTGACTACAAATTGTGCTGCT  700

seq1  ATTAAAAACTCTTGGGCATACCTTTGAGGGAGTGTATCCGCACATTTCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACTCTTGGGCATACCTTTGAGGGAGTGTATCCGCACATTTCAG  750

seq1  CTGGGAACCAACCTTACTGTGAAAACGTGAGGTCAGCTTTAGTAGATTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAACCAACCTTACTGTGAAAACGTGAGGTCAGCTTTAGTAGATTCC  800

seq1  ACCACAAAATAACAATTATAGAGTGGGTGTAAAGACACT-GAAATTTAAA  848
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACCACAAAATAACAATTATAGAGTGGGTGTAAAGACACTGGAAATTTAAA  850

seq1  TTCATCATTTATATATACTCCGCAATGCATCACGTTAGAGAAGTAGAATG  898
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCATCATTTATATATACTCCGCAATGCATCACGTTAGAGAAGTAG-ATG  899

seq1  TTTAA-TTCTTAGAGAAAAATCTACCTGGGAACTTAAGCTGTCCACATAA  947
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTCTTAGAGAAAAATCTACCTGGGAACTTAAGCTGTCCACATAA  949

seq1  GCCAAGTAGGAGTCTTCAAAGCCTGACAGATATATCATCAAGATGT-AAA  996
      ||||||||||||||||| || |  ||||||||||||||||  |||| |||
seq2  GCCAAGTAGGAGTCTTCCAACCTGGACAGATATATCATCAGAATGTAAAA  999

seq1  GAGCTGTCACCAT-GGTGTCAATCTATAGCT-AGTCTGGGGGGACAAACC  1044
      ||||||  ||||| ||||||| ||||||||| ||||| ||||||||||||
seq2  GAGCTGGTACCATGGGTGTCATTCTATAGCTAAGTCT-GGGGGACAAACC  1048

seq1  TTACCTAGGGAACAGGCTCTAATATAAACTCCCTCATTTTACTCTT  1090
       ||| || ||||||| |||||||||||   | ||||||||||||||
seq2  -TACTTA-GGAACAGCCTCTAATATAA---CTCTCATTTTACTCTT  1089

seq1: chr8_121394190_121394956
seq2: B6Ng01-014F17.g_70_843 (reverse)

seq1  GCATTTTGTCTCTGGATTTGTCCCGGTGATGATGTTTATCTTAGATTTGT  50
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  GCATTTTGTCTCGGGATTTGTCCCAGTGATGATGTTTATCTTAGATTTGT  50

seq1  GAACTCCAAGC-AGGCCAAGGCTGCACGCCTTAGGTGGGCTTTACTGTGT  99
      ||||||||||| ||||||| | ||||||||||||||||||||||||||||
seq2  GAACTCCAAGCAAGGCCAAAGGTGCACGCCTTAGGTGGGCTTTACTGTGT  100

seq1  TGGCACAGTCCTT-AAAGGGCCTGTAATTCATTAAACCCACACC-TAAAG  147
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  TGGCACAGTCCTTAAAAGGGCCTGTAATTCATTAAACCCACACCTTAAAG  150

seq1  AGCGGTTCGGGCAGGTGC-GGCCGTGTATACAGTCCCTGGCGAGCACTCA  196
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCGGTTCGGGCAGGTGCGGGCCGTGTATACAGTCCCTGGCGAGCACTCA  200

seq1  GGAGTGTGTCACAGAGCATCATGCTCTGAGCATCATGT-CAGCAGTGTCT  245
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGAGTGTGTCACAGAGCATCATGCTCTGAGCATCATGTCCAGCAGTGTCT  250

seq1  GTG-AATTATCCTAGTGAATGAATGCCATGTAGAATCAATACCAGAG-AA  293
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGAAATTATCCTAGTGAATGAATGCCATGTAGAATCAATACCAGAGAAA  300

seq1  AGGTGCATGGCGATGTCCCGGGGAACCACAGAGTCACTTCCAAAGCCCTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCATGGCGATGTCCCGGGGAACCACAGAGTCACTTCCAAAGCCCTC  350

seq1  CCTGTACCTCCCCCAGGGTCACACAGGTCACAGTGGCTGCCCCCAAGCAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCTCCCCCAGGGTCACACAGGTCACAGTGGCTGCCCCCAAGCAA  400

seq1  CAAGTATAACAACACATGTGAAGTGATGTGTCCTATGAAAGGTCACTAGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATAACAACACATGTGAAGTGATGTGTCCTATGAAAGGTCACTAGG  450

seq1  ATTCTCACTGGGGACCGGACCTAACGGTACCACGAGGCATTTATAAGCTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACTGGGGACCGGACCTAACGGTACCACGAGGCATTTATAAGCTC  500

seq1  CCAAGTCCATGTAGGAAAGAATAAGTTACATTTGTTTGCCCACGTCAAGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCCATGTAGGAAAGAATAAGTTACATTTGTTTGCCCACGTCAAGC  550

seq1  ACAGCAAGTCACTCGGATCAGAGATTGGTAGGAACCCATCCCAAACCCAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGTCACTCGGATCAGAGATTGGTAGGAACCCATCCCAAACCCAA  600

seq1  CCTCACACGAACCAGCCAGGACCAGCCTGGCAAGCAGCCCTGTGTGGAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACGAACCAGCCAGGACCAGCCTGGCAAGCAGCCCTGTGTGGAAA  650

seq1  CAGAAGCCTCAGGCCAGCCAAGTACCATTTTTACTCTGCATCACTGAAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCTCAGGCCAGCCAAGTACCATTTTTACTCTGCATCACTGAAAT  700

seq1  GTAACAGCCAGTGGTCTGTGGTCGAGAGTGTTCCGGGATGTTGTTCAGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGCCAGTGGTCTGTGGTCGAGAGTGTTCCGGGATGTTGTTCAGTT  750

seq1  TAAGATAAAACAGCAGAGGAATTC  767
      ||||||||||||||||||||||||
seq2  TAAGATAAAACAGCAGAGGAATTC  774