BAC Information

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BAC

Clone NameB6Ng01-015A19
Chromosome8 (Build37)8 (Build37)
Map Location 19,736,301 - 19,737,20119,871,097 - 19,872,031
singlet/doubletsingletsinglet
Overlap gene4930467E23Rik
Upstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730
Downstream geneLOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015A19.bB6Ng01-015A19.g
ACCDH849417DH849418
length940968
definitionDH849417|Mus musculus domesticus DNA, BAC clone: B6Ng01-015A19, 5' end.DH849418|Mus musculus domesticus DNA, BAC clone: B6Ng01-015A19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,736,301 - 19,737,201)(19,871,097 - 19,872,031)
sequence
gaattcaacgttttgtctagtcttgttggcccatggattgcatcccagaa
cttgggaaggaggacatgaacagatttctgtgagttaaggccaacatgct
ccatagagcagttttcagaccagcatggatacatagtgagatcctgattc
aaaaaaaatgttgtttgtaaacatctaaagtaagatacagaagggacaca
aatataaagtacttaaaacacttgctaaatatttttcttatgaatagcac
aataatgctaactttaaaatctatgtcacagtactggatcgtcagctcag
agaactgaagtgaagcatgtcaggttcaatgaaggtaaggtttttatagt
gaatataaatatggtatatagtagccagtcctattaccctaaagaagagt
agagattaagcttctttcccactgattccagaaaaggcagctcaactagc
agaaaggaatccaaatgcagacaacagtgtgaagcagtcctcccttcagt
ttatagagaacccacatgaagaccaagctgcacatctcctacatatgggg
agggggtctatgtgcagcccatgcatgctctttgattggtggttcaatct
ctgtgagccctcatgggcccaggctacttgattgtgtaggttttcttgtg
gtgtccctgacccctcagtcacaatgttctcctttgagttcaatgtcctt
tccccaactcttccacaagactctccaaactccccttgatgtttgtctgt
ggttctgtacatttgtttccgtcctctgctggatgaagcctcttagaagt
gttatcctaggctcctgtctacaagcatagcagaacatcattaatggtgt
caaagcctggcctctctcccacagtgtggtctcaattgggccagttattg
gggtggcgattcccttaatcctctgtccattgtaatccct
gaattctattttttaagaattttttaaaattctaaaacaaaaattctaat
attgaaggagttatcaaatatttctatttgacctatataaccagaactca
ttagtaactattatcttgatttcatagttgacgaaatgataaattaggaa
gggatacaaaggagcactggttcacacagctttctgatgacaaagacaat
aatttcatatgtagagtagaaagtctgagaactgccatagtctccaaagt
gtcctgtaagaagcaaaagtccacctgggttatcagtttggatgactagc
ttcctctgcttcttccatcctttcttctcattagaattcacatctgagga
tagtgtagtcaagggaccagacaagaataagtaaaaggaaggaaggaagg
agacaatgactcagcctggctttttctcagtaaaagaagatcttatggga
tggatccccaggtggggcagtctctgaatggtccttccttcagtctcagt
tctgaactctgtctctctaactccttccatggatattttgttcccccttc
taagaaggaacgaagtatccacactttggtcttccttcttcttgagtttc
atgacttctgcaaaattgtatattgggtattctaaactattgcaacaaga
ttttgctgacaggaccctgatatagcagtctcctgtgaggctatgtcagt
gcctggtaaatacagaagtggatgctcacagtcatctattggatggaaca
cagggtccccaatgaaggagctagagaaagtacccaagaagctgaaggag
tctgcagccctataggagaaacaacaatatgaactaaccagtacccccca
gagctcgtgtctctagtggcatacgtagcagaggatggcctaatcggcca
tcagtagtaggagaggtccttgatcttgcaaagattctaggccccagtat
aggggaatgccagggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19736301_19737201
seq2: B6Ng01-015A19.b_47_948

seq1  GAATTCAACGTTTTGTCTAGTCTTGTTGGCCCATGGATTGCATCCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGTTTTGTCTAGTCTTGTTGGCCCATGGATTGCATCCCAGAA  50

seq1  CTTGGGAAGGAGGACATGAACAGATTTCTGTGAGTTAAGGCCAACATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAGGAGGACATGAACAGATTTCTGTGAGTTAAGGCCAACATGCT  100

seq1  CCATAGAGCAGTTTTCAGACCAGCATGGATACATAGTGAGATCCTGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAGCAGTTTTCAGACCAGCATGGATACATAGTGAGATCCTGATTC  150

seq1  -AAAAAAATGTTGTTTGTAAACATCTAAAGTAAGATACAGAAGGGACACA  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATGTTGTTTGTAAACATCTAAAGTAAGATACAGAAGGGACACA  200

seq1  AATATAAAGTACTTAAAACACTTGCTAAATATTTTTCTTATGAATAGCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAGTACTTAAAACACTTGCTAAATATTTTTCTTATGAATAGCAC  250

seq1  AATAATGCTAACTTTAAAATCTATGTCACAGTACTGGATCGTCAGCTCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGCTAACTTTAAAATCTATGTCACAGTACTGGATCGTCAGCTCAG  300

seq1  AGAACTGAAGTGAAGCATGTCAGGTTCAATGAAGGTAAGGTTTTTATAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAAGTGAAGCATGTCAGGTTCAATGAAGGTAAGGTTTTTATAGT  350

seq1  GAATATAAATATGGTATATAGTAGCCAGTCCTATTACCCTAAAGAAGAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAAATATGGTATATAGTAGCCAGTCCTATTACCCTAAAGAAGAGT  400

seq1  AGAGATTAAGCTTCTTTCCCACTGATTCCAGAAAAGGCAGCTCAACTAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTAAGCTTCTTTCCCACTGATTCCAGAAAAGGCAGCTCAACTAGC  450

seq1  AGAAAGGAATCCAAATGCAGACAACAGTGTGAAGCGGTCCTCCCTTCAGT  499
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAAAGGAATCCAAATGCAGACAACAGTGTGAAGCAGTCCTCCCTTCAGT  500

seq1  TTATAGAGAACCCACATGAAGACCAAGCTGCACATCTGCTACATATGGGG  549
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTATAGAGAACCCACATGAAGACCAAGCTGCACATCTCCTACATATGGGG  550

seq1  AGGGGGTCTATGTGCAGCCCATGCATGCTCTTTGATTGGTGGTTCAATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTCTATGTGCAGCCCATGCATGCTCTTTGATTGGTGGTTCAATCT  600

seq1  CTGTGAGCCCTCATGGGCCCAGGCTACTTGATTGTGTAGGTTTTCTTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCCCTCATGGGCCCAGGCTACTTGATTGTGTAGGTTTTCTTGTG  650

seq1  GTGTCCCTGACCCCTCAGTCACAATGTTCTCCTTTGAGTTCAATGTCC-T  698
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGTCCCTGACCCCTCAGTCACAATGTTCTCCTTTGAGTTCAATGTCCTT  700

seq1  TCCCCAACTCTTCCACAAGACTCTCCAAACTCCCCTTGATGTTTGTCTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAACTCTTCCACAAGACTCTCCAAACTCCCCTTGATGTTTGTCTGT  750

seq1  GGTTCTGTACATTTGTTTCCATCCTCTGCTGGATGAAGCCTCTTAGAAGT  798
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGTTCTGTACATTTGTTTCCGTCCTCTGCTGGATGAAGCCTCTTAGAAGT  800

seq1  GTTATCCTAGGCTCCTGTCTACAAGCATAGCAGAACATCATTAATGGTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCTAGGCTCCTGTCTACAAGCATAGCAGAACATCATTAATGGTGT  850

seq1  CAAAGCCTGG-CTCTCTCCCACAGTGTGGGTCTCAAATTGGGCCAGTTAT  897
      |||||||||| |||||||||||||||| |||||| |||||||||||||||
seq2  CAAAGCCTGGCCTCTCTCCCACAGTGT-GGTCTC-AATTGGGCCAGTTAT  898

seq1  TGGG  901
      ||||
seq2  TGGG  902

seq1: chr8_19871097_19872031
seq2: B6Ng01-015A19.g_65_1003

seq1  GAATTCTATTTTTTAAGAATTTTTTAAAATTCTAAAACAAAAATTCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTTTTAAGAATTTTTTAAAATTCTAAAACAAAAATTCTAAT  50

seq1  ATTGAAGGAGTTATCAAATATTTCTATTTGACCTATATACCCAGAACTCA  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTGAAGGAGTTATCAAATATTTCTATTTGACCTATATAACCAGAACTCA  100

seq1  TTAGTAACTATTATCTTGATTTCATAGTTGACGAAATGATAAATTAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAACTATTATCTTGATTTCATAGTTGACGAAATGATAAATTAGGAA  150

seq1  GGGATACAAAGGAGCACTGGTTCACACAGCTTTCTGATGACAAAGACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATACAAAGGAGCACTGGTTCACACAGCTTTCTGATGACAAAGACAAT  200

seq1  AATTTCATATGTAGAGTAGAAAGTCTGAGAACTGCCATAGTCTCCAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATATGTAGAGTAGAAAGTCTGAGAACTGCCATAGTCTCCAAAGT  250

seq1  GTCCTGTAAGGAGCAAAAGTCCACCTGGGTTATCAGTTTGGATGACTAGC  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTAAGAAGCAAAAGTCCACCTGGGTTATCAGTTTGGATGACTAGC  300

seq1  TTCCTCTGCTTCTTCCATCCTTTCTTCTCATTAGAATTCACATCTGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGCTTCTTCCATCCTTTCTTCTCATTAGAATTCACATCTGAGGA  350

seq1  TAGTGTAGTCAAGGGACCAGACAAGAATAAGTAA----AAGGAAGGAAGG  396
      ||||||||||||||||||||||||||||||||||    ||||||||||||
seq2  TAGTGTAGTCAAGGGACCAGACAAGAATAAGTAAAAGGAAGGAAGGAAGG  400

seq1  AGACAATGACTCAGCCTGGCTTTTTCTCAGTAAAAGAAGATCTTATGGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGACTCAGCCTGGCTTTTTCTCAGTAAAAGAAGATCTTATGGGA  450

seq1  TAGATCCCCAGGTGGGGCAGTCTCTGAATGGTCCTTCCTTCAGTCTCAGT  496
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCCCAGGTGGGGCAGTCTCTGAATGGTCCTTCCTTCAGTCTCAGT  500

seq1  TCTGAACTCTGTCTCTGTAACTCCTTCCATGGATATTTTGTTCCCCCTTC  546
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTGAACTCTGTCTCTCTAACTCCTTCCATGGATATTTTGTTCCCCCTTC  550

seq1  GAAGAAGGAACGAAGTATCCACACTTTGGTCTTCCTTCTTCTTGAGTTTC  596
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGAACGAAGTATCCACACTTTGGTCTTCCTTCTTCTTGAGTTTC  600

seq1  ATGACTTCTGCAAAATTGTATATTGGGTATTCTAAACTATTGCAACAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCTGCAAAATTGTATATTGGGTATTCTAAACTATTGCAACAAGA  650

seq1  TTTTGCTGACAGGACCCTGATATAGCAGTCTCCTGTGAGGCTATGTCAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGACAGGACCCTGATATAGCAGTCTCCTGTGAGGCTATGTCAGT  700

seq1  GCCTGGTAAATACAGAAGTGGATGCTCACAGTCATCTATTGGATGGAACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTAAATACAGAAGTGGATGCTCACAGTCATCTATTGGATGGAACA  750

seq1  CAGGGTCCCCAATGAAGGAGCTAGAGAAAGTACCCAAGAAGCTGAAGGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCCCCAATGAAGGAGCTAGAGAAAGTACCCAAGAAGCTGAAGGAG  800

seq1  TCTGCAGCCCTATAGGAGAAACAACAATATGAACTAACCAGTACTCCCCA  846
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTGCAGCCCTATAGGAGAAACAACAATATGAACTAACCAGTACCCCCCA  850

seq1  GAGCTCGTGTCTCTAGTGGCATACGTAGCAGAGGATGGCCTAATCGGCCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCGTGTCTCTAGTGGCATACGTAGCAGAGGATGGCCTAATCGGCCA  900

seq1  TCAGTAGTAGGAGAGGTCCTTGATCTTGCGAGGATTCTA  935
      ||||||||||||||||||||||||||||| | |||||||
seq2  TCAGTAGTAGGAGAGGTCCTTGATCTTGCAAAGATTCTA  939