BAC Information

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BAC

Clone NameB6Ng01-015C17
Chromosome8 (Build37)
Map Location 105,518,829 - 105,661,729
singlet/doubletdoublet
Overlap geneLOC100041368
Upstream geneCdh11, EG667618
Downstream gene1600027J07Rik, LOC100041397, LOC667656, Cdh5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015C17.bB6Ng01-015C17.g
ACCDH849503DH849504
length1,032527
definitionDH849503|Mus musculus domesticus DNA, BAC clone: B6Ng01-015C17, 5' end.DH849504|Mus musculus domesticus DNA, BAC clone: B6Ng01-015C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,660,697 - 105,661,729)(105,518,829 - 105,519,334)
sequence
gaattctattgtcacagaattattttcaggatggaataaactaagcagag
aaaattttagtgtgtaaactgccatagtgtgtaaattaactttataaagg
atgaaacaaaaggaaaatatcactgttgtggtctaggtagattttcagta
catctgcaaaggttcatgtgtagatgtccttagtatgggtatggtaagag
ctggtgggacctttaagatgtgaggcctatttgaataagaattacaaata
ggaaatgtgaaagtctcttggtatcagcatctatggactcatccaaacag
agaaaatcacatagtagatttcaatgtttttgaattttcaatgatttcaa
catgcttcatgggtaaagatagttccggaacaaaaacaaacaaataaatg
atgtgtagcatagtggaagatcactggggacatttctcttcactgagatt
agaatagttctcacaggagcctggttagtttatatgacagggttgttaga
gcagtattaaactgttccctccatggtttctgacttcctgacatggcatg
tgattctttcctcttggactccgtctcatcattatactatatactgtgag
acaaatgcagatgcgatctcagcaaatgttggtgccatgctctggaatac
ttaaatctgtaaagctcaagagataccttggcattgtaagctactcagcc
tcaagtgttttcattgtagaggtggaaaagaacagagacaaattcgatgg
attatagaagttccttccaaagacctgtatgttaaagaccttggtcctca
ttgtctgatgttattaggtgttgtcaaatgtttaagaggttgggtccctc
tcagaagtctctgttcctgagaacatagttcaaacagagcttggcacctc
ctttctcttttgcttccctttgcagctgccctggcaatgttctcactatg
attcactgattttccacagccactgactgtcacagttacggggaaggagg
caactgagttacttctggaaatacaggccaaa
gaattctgttacaaaagtatgacctgatatcatggccatgagttactgca
ggatggagatatatttattcttactcgtgtgtcctttatccacctaccat
gcaattttacagatattaaatatgttatgagtgctgtgaataaggcaact
aagtaaaagccagcagaggatgctacaaataaatttcacatccctgaaat
ttccattcttcatgccattaggttaattactggttcttcatgggtgagat
ctcacattttagatagaaggccaaatagaaaaggtggtatctatgttact
tttttttctctttaggaatataactgggcatttattttccacttactcag
ctactagatgcttttaaattgatgttgctgtactcctgatggcatgctta
ggaagaagattaaagagagcatgtgggtccaccagacaaagtggtcctgt
ttcatttttggatttataccagaaccacagtttggaatttatttacaccg
ctttgggaccaatttaggggtctcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105660697_105661729
seq2: B6Ng01-015C17.b_47_1078 (reverse)

seq1  TTTGGCCTGTATTTCCAGAAGGTAAACTCAGTTGCTTCCTTCCCCGTAAC  50
      |||||||||||||||||||||   ||||||||||| ||||||||||||||
seq2  TTTGGCCTGTATTTCCAGAAG--TAACTCAGTTGCCTCCTTCCCCGTAAC  48

seq1  TGTGACAGTCAGTGGCTGTGGAAAATCAGTGAATCATAGTGAGAACATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGTCAGTGGCTGTGGAAAATCAGTGAATCATAGTGAGAACATTG  98

seq1  CCCAGGGCAGCTGCAAAGGGAAGCAAAAGAGAAAGGAGGTGCCAAGCTCT  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCAGGGCAGCTGCAAAGGGAAGCAAAAGAGAAAGGAGGTGCCAAGCTCT  147

seq1  GTTTGAACTATGTTCTCAGGAACAGAAGACTTCTGAGAGGGA-CCAATCT  199
      ||||||||||||||||||||||||| |||||||||||||||| |||| ||
seq2  GTTTGAACTATGTTCTCAGGAACAG-AGACTTCTGAGAGGGACCCAACCT  196

seq1  CTTAAACATTTGACAACACCTAATAACATCAGACAATGAGGACCAAGGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACATTTGACAACACCTAATAACATCAGACAATGAGGACCAAGGTC  246

seq1  TTTAACATACAGGTCTTTGGAAGGAACTTCTATAATCCATCGAATTTGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACATACAGGTCTTTGGAAGGAACTTCTATAATCCATCGAATTTGTC  296

seq1  TCTGTTCTTTTCCACCTCTACAATG-AAACACTTGAGGCTGAGTAGCTTA  348
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTGTTCTTTTCCACCTCTACAATGAAAACACTTGAGGCTGAGTAGCTTA  346

seq1  CAATGCCAAGGTATCTCTTGAGC-TTACAGATTTAAGTATTCCAGAGCAT  397
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAATGCCAAGGTATCTCTTGAGCTTTACAGATTTAAGTATTCCAGAGCAT  396

seq1  GGCACCAACATTTGCTGAGATCGCATCTGCATTTGTCTCACAGTATATAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAACATTTGCTGAGATCGCATCTGCATTTGTCTCACAGTATATAG  446

seq1  TATAATGATGAGACGGAGTCCAAGAGGAAAGAATCACATGCCATGTCAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGATGAGACGGAGTCCAAGAGGAAAGAATCACATGCCATGTCAGG  496

seq1  AAGTCAGAAACCATGGAGGGAACAGTTTAATACTGCTCTAACAACCCTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGAAACCATGGAGGGAACAGTTTAATACTGCTCTAACAACCCTGT  546

seq1  CATATAAACTAACCAGGCTCCTGTGAGAACTATTCTAATCTCAGTGAAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAACTAACCAGGCTCCTGTGAGAACTATTCTAATCTCAGTGAAGA  596

seq1  GAAATGTCCCCAGTGATCTTCCACTATGCTACACATCATTTATTTGTTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCCCCAGTGATCTTCCACTATGCTACACATCATTTATTTGTTTG  646

seq1  TTTTTGTTCCGGAACTATCTTTACCCATGAAGCATGTTGAAATCATTGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTCCGGAACTATCTTTACCCATGAAGCATGTTGAAATCATTGAA  696

seq1  AATTCAAAAACATTGAAATCTACTATGTGATTTTCTCTGTTTGGATGAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAAACATTGAAATCTACTATGTGATTTTCTCTGTTTGGATGAGT  746

seq1  CCATAGATGCTGATACCAAGAGACTTTCACATTTCCTATTTGTAATTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGATGCTGATACCAAGAGACTTTCACATTTCCTATTTGTAATTCTT  796

seq1  ATTCAAATAGGCCTCACATCTTAAAGGTCCCACCAGCTCTTACCATACCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATAGGCCTCACATCTTAAAGGTCCCACCAGCTCTTACCATACCC  846

seq1  ATACTAAGGACATCTACACATGAACCTTTGCAGATGTACTGAAAATCTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAGGACATCTACACATGAACCTTTGCAGATGTACTGAAAATCTAC  896

seq1  CTAGACCACAACAGTGATATTTTCCTTTTGTTTCATCCTTTATAAAGTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCACAACAGTGATATTTTCCTTTTGTTTCATCCTTTATAAAGTTA  946

seq1  ATTTACACACTATGGCAGTTTACACACTAAAATTTTCTCTGCTTAGTTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACACTATGGCAGTTTACACACTAAAATTTTCTCTGCTTAGTTTA  996

seq1  TTCCATCCTGAAAATAATTCTGTGACAATAGAATTC  1033
      ||||||||||||||||||||||||||||||||||||
seq2  TTCCATCCTGAAAATAATTCTGTGACAATAGAATTC  1032

seq1: chr8_105518829_105519334
seq2: B6Ng01-015C17.g_70_596

seq1  GAATTCTGTTACAAAAGTATGACCTGATATCATGGCCATGAGTTACTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTACAAAAGTATGACCTGATATCATGGCCATGAGTTACTGCA  50

seq1  GGATGGAGATATATTTATTCTTACTCGTGTGTCCTTTATCCACCTACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAGATATATTTATTCTTACTCGTGTGTCCTTTATCCACCTACCAT  100

seq1  GCAATTTTACAGATATTAAATATGTTATGAGTGCTGTGAATAAGGCAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTACAGATATTAAATATGTTATGAGTGCTGTGAATAAGGCAACT  150

seq1  AAGTAAAAGCCAGCAGAGGATGCTACAAATAAATTTCACATCCCTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAGCCAGCAGAGGATGCTACAAATAAATTTCACATCCCTGAAAT  200

seq1  TTCCATTCTTCATGCCATTAGGTTAATTACTGGTTCTTCATGGGTGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCTTCATGCCATTAGGTTAATTACTGGTTCTTCATGGGTGAGAT  250

seq1  CTCACATTTTAGATAGAAGGCCAAATAGAAAAGGTGGTATCTATGTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTTTAGATAGAAGGCCAAATAGAAAAGGTGGTATCTATGTTACT  300

seq1  TTTTTTTCTCTTTAGGAATATAACTGGGCATTTATTTTCCACTTACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCTTTAGGAATATAACTGGGCATTTATTTTCCACTTACTCAG  350

seq1  CTACTAGATGCTTTTAAATTGATGTTGCTGTACTCCTGATGGCATGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGATGCTTTTAAATTGATGTTGCTGTACTCCTGATGGCATGCTTA  400

seq1  GGAAGAAGATTAAAGAGAGCATGT-GGTCCACCAGAC-AAGTG--TCTG-  445
      |||||||||||||||||||||||| |||||||||||| |||||   ||| 
seq2  GGAAGAAGATTAAAGAGAGCATGTGGGTCCACCAGACAAAGTGGTCCTGT  450

seq1  TTCATTTT--GA-TTATA-CAGAA-CACAGTT--GA--TTA-TTACA-CG  484
      ||||||||  || ||||| ||||| |||||||  ||  ||| ||||| ||
seq2  TTCATTTTTGGATTTATACCAGAACCACAGTTTGGAATTTATTTACACCG  500

seq1  CTT--GGA-CAATT--AGGGTCTCAGA  506
      |||  ||| |||||   ||||||||||
seq2  CTTTGGGACCAATTTAGGGGTCTCAGA  527