BAC Information

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BAC

Clone NameB6Ng01-015K17
Chromosome17 (Build37)8 (Build37)
Map Location 31,001,322 - 31,001,40985,654,819 - 85,655,023
singlet/doubletsingletsinglet
Overlap geneDnahc8
Upstream geneMdga1, LOC100042885, LOC100042888, Zfand3, Btbd9, EG623169, Glo1, LOC666942, 1700097N02Rik
Downstream geneGlp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015K17.bB6Ng01-015K17.g
ACCDH849863DH849864
length88307
definitionDH849863|Mus musculus domesticus DNA, BAC clone: B6Ng01-015K17, 5' end.DH849864|Mus musculus domesticus DNA, BAC clone: B6Ng01-015K17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,001,322 - 31,001,409)(85,654,819 - 85,655,023)
sequence
gaattcttgggactggaggggattgagggaaagccagaaggctgtgtcag
gagttacacttctgcacaccagccacttggggtggagg
ctctcattcttcaaataaaaaaaacatgttaaatttaaagtcttcataga
agaaatagaagaggaggaggaggaggaggaagaagaagaagataaagaag
acaaataaaatgaagataaggaggaagaaaaacaagaagaggaagaagag
gaaggaggaggaagaggaggaaaagaaactagaagaggaggaagaagagg
aagaaaaagaagaagaggaggaggggaaggaagagaaggaagaagaagaa
gaagaagaggaagaacctttaaaaagaagaagaggaagaagaagaggagg
aggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_31001322_31001409
seq2: B6Ng01-015K17.b_39_126

seq1  GAATTCTTGGGACTGGAGGGGATTGAGGGAAAGCCAGAAGGCTGTGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGACTGGAGGGGATTGAGGGAAAGCCAGAAGGCTGTGTCAG  50

seq1  GAGTTACACTTCTGCACACCAGCCACTTGGGGTGGAGG  88
      ||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACACTTCTGCACACCAGCCACTTGGGGTGGAGG  88

seq1: chr8_85654819_85655023
seq2: B6Ng01-015K17.g_130_379 (reverse)

seq1  TTCTCCTCCTCCTCTTCTTCCACTTTTTTTTTTTTTTCGAAACAGGGTTT  50
      ||||||||||||||||||||  | | || || |||||  |||     || 
seq2  TTCTCCTCCTCCTCTTCTTCTTCCTCTTCTTCTTTTT--AAAGGTTCTTC  48

seq1  CTCT------------------GTATAGCCCTGGCTGTCCTGGTCTTCTT  82
      ||||                   | |   |||  |  ||||  |||||||
seq2  CTCTTCTTCTTCTTCTTCTTCCTTCTCTTCCTTCCCCTCCTCCTCTTCTT  98

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCT---------------TCTT--  115
      ||| |||||| |||||||| || ||||||               ||||  
seq2  CTTTTTCTTCCTCTTCTTCCTCCTCTTCTAGTTTCTTTTCCTCCTCTTCC  148

seq1  -----CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT  160
           |||| |||||||| ||||||| || |||||| || |  ||||| |
seq2  TCCTCCTTCCTCTTCTTCCTCTTCTTGTTTTTCTTCCTCCTTATCTTCAT  198

seq1  CTTCTTCTTCTTC-------TCCTCCTCCTCCTCCTCCTCCTCCTCCTCT  203
       || ||  |||||       || || || |||||||||||||||||||||
seq2  TTTATTTGTCTTCTTTATCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCT  248

seq1  TC  205
      ||
seq2  TC  250