BAC Information

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BAC

Clone NameB6Ng01-016J08
Chromosome8 (Build37)
Map Location 66,574,553 - 66,575,819
singlet/doubletsinglet
Overlap geneTll1
Upstream geneSpock3, LOC384831, EG244495
Downstream geneLOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016J08.bB6Ng01-016J08.g
ACCDH850508DH850509
length1,2221,144
definitionDH850508|Mus musculus domesticus DNA, BAC clone: B6Ng01-016J08, 5' end.DH850509|Mus musculus domesticus DNA, BAC clone: B6Ng01-016J08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagaattttggaataaaagggtaccaaaggttctggaggataa
acaaaaaagaagacacagagttgtctaatagaatcaccatttctatttca
gaatatgaaaaggttctggagaaatgttttataacaaggaatatatttaa
caatattaaaatgaacaccttaaaatagatgaaatgataaaattttattt
atatagtttgacataatttacaaaacaataatttgaaatacttttgagat
ggaagaattgttatttcctagagtaatttctttcaatagattactaaaca
atctcttgagattcaaactaaaatattatgaatcaggtcagtcaaataac
tttctaatggaaacatacaatgacttaaaattcgaccctctcagaggcaa
ggggagaggggatggcagaagaactctgggaggggagaccaggatggggg
caacatttggaatgtagataaattagataattaattaatgaattaattaa
aatgtagatttccttatgaaaatgtatagaattgggttttgttgtttgag
aaattcaaacaggcatataatgtgtttggaccaaatccacactcattcct
cctccccattctaactcttgccacaccttaccccactacttctcccctat
ccattttatgttctcagggagtccagttagtactgtcagtactgatatag
atttagggccatctcctaccatgacaaccttatctatcagatgccacatt
cctgaaaaaaaaaaaaaaaagcacggaccttctctctccccagtaattat
cagttgtcaaagatccccaggagtggtgggactcttccaatccatgttgg
gatttcagttggcctgaccttgtacaagtatgcacagtcataccagctgt
gtgatgagtaggacagctttggaacagtatacatactcatggctggcgag
ctatgacagtggggaagacagagactgcaggcagcaagactgctgattta
tcatgaagatgctataatgtactgagtcacaggtcagataggggagaaga
aatttcaacttaggtaattatctcgaagacagaaagattctgtgtggcta
cctctcttagcacctgttcctatatcaaaattactatatatccggattac
tattcaatattagtttggtgcatggacgagtcttgtcgaactgacgaaca
tcatttacaatgtttctatgga
gaattctcacccgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcaggcaaatgtaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatgaaaaattcaggtgacagc
agatgttggcgaggatgtggagaaagaggaacgcttctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccggaggatcctgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggagacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtgatacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcaaaaa
ggaactctcacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaacacatgaaactcaa
gagaacgaagaccaaagtatggacactttgccccttcttagaataggaaa
caaaacacccatggaaggagttacagagacaaaatttggaagtgtgacga
aaggatggaccatctagtgattgccatatccagagatccatcccacgatc
atcttccaaacgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatatagctgtctcttgtgagactatgccagggcctagcaaac
acagaagtggatgctcacagtcagtattgaatggatcacaggccccaatg
agagctagagaagcacccagaactaaagggactgcacctatagtgaacac
atatgactacagtacccgagctcttgtctctagctgcatatgtatcaaag
atgactatagtccaccactgaagaaaggtcatgacttgactgccaaccta
tatgccatacaggaaccaggccaaaagggagagtggtggtgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_66574553_66575819
seq2: B6Ng01-016J08.b_31_1252

seq1  GAATTCAAAGAATTTTGGAATAAAAGGGTACCAAAGGTTCTGGAGGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAATTTTGGAATAAAAGGGTACCAAAGGTTCTGGAGGATAA  50

seq1  ACAAAAAAGAAGACACAGAGTTGTCTAATAGAATCACCATTTCTATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAGAAGACACAGAGTTGTCTAATAGAATCACCATTTCTATTTCA  100

seq1  GAATATGAAAAGGTTCTGGAGAAATGTTTTATAACAAGGAATATATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGAAAAGGTTCTGGAGAAATGTTTTATAACAAGGAATATATTTAA  150

seq1  CAATATTAAAATGAACACCTTAAAATAGATGAAATGATAAAATTTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTAAAATGAACACCTTAAAATAGATGAAATGATAAAATTTTATTT  200

seq1  ATATAGTTTGACATAATTTACAAAACAATAATTTGAAATACTTTTGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTTGACATAATTTACAAAACAATAATTTGAAATACTTTTGAGAT  250

seq1  GGAAGAATTGTTATTTCCTAGAGTAATTTCTTTCAATAGATTACTAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATTGTTATTTCCTAGAGTAATTTCTTTCAATAGATTACTAAACA  300

seq1  ATCTCTTGAGATTCAAACTAAAATATTATGAATCAGGTCAGTCAAATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGAGATTCAAACTAAAATATTATGAATCAGGTCAGTCAAATAAC  350

seq1  TTTCTAATGGAAACATACAATGACTTAAAATTCGACCCTCTCAGAGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATGGAAACATACAATGACTTAAAATTCGACCCTCTCAGAGGCAA  400

seq1  GGGGAGAGGGGATGGCAGAAGAACTCTGGGAGGGGAGACCAGGATGGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGGGGATGGCAGAAGAACTCTGGGAGGGGAGACCAGGATGGGGG  450

seq1  CAACATTTGGAATGTAGATAAATTAGATAATTAATTAATGAATTAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTGGAATGTAGATAAATTAGATAATTAATTAATGAATTAATTAA  500

seq1  AATGTAGATTTCCTTATGAAAATGTATAGAATTGGGTTTTGTTGTTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGATTTCCTTATGAAAATGTATAGAATTGGGTTTTGTTGTTTGAG  550

seq1  AAATTCAAACAGGCATATAATGTGTTTGGACCAAATCCACACTCATTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAACAGGCATATAATGTGTTTGGACCAAATCCACACTCATTCCT  600

seq1  CCTCCCCATTCTAACTCTTGCCACACCTTACCCCACTACTTCTCCCCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCATTCTAACTCTTGCCACACCTTACCCCACTACTTCTCCCCTAT  650

seq1  CCATTTTATGTTCTCAGGGAGTCCAGTTAGTACTGTCAGTACTGATATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTATGTTCTCAGGGAGTCCAGTTAGTACTGTCAGTACTGATATAG  700

seq1  ATTTAGGGCCATCTCCTACCATGACAACCTTATCTATCAGATGCCACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGCCATCTCCTACCATGACAACCTTATCTATCAGATGCCACATT  750

seq1  CCTGAAAAAAAAAAAAAAAAGCACGGACCTTCTCTCTCCCCAGTAATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAAAAAAAAAAAAAGCACGGACCTTCTCTCTCCCCAGTAATTAT  800

seq1  CAGTTGTCAAAGATCCCCAGGAGTGGTGGGACTCTTCCAATCCATGTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTCAAAGATCCCCAGGAGTGGTGGGACTCTTCCAATCCATGTTGG  850

seq1  GATTTCAGTTGGCCTGACCTTGTACAAGTATGCACAGTCATACCAGCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGTTGGCCTGACCTTGTACAAGTATGCACAGTCATACCAGCTGT  900

seq1  GTGATGAGTAGGACAGCTTTGGAACAGTATACATACTCATGGCTGGCGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGTAGGACAGCTTTGGAACAGTATACATACTCATGGCTGGCGAG  950

seq1  CTATGACAGTGTGGAAGACAGAGACTGCAGGCAGCAAGACTGCTGATTTA  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTATGACAGTGGGGAAGACAGAGACTGCAGGCAGCAAGACTGCTGATTTA  1000

seq1  TCATGAAAGATGCTAATAATGTACCTGAGTCACAAGGGTCAGAATAAGGG  1050
      ||||| |||||||| |||||||| ||||||||||  |||||||   ||||
seq2  TCATG-AAGATGCT-ATAATGTA-CTGAGTCACA--GGTCAGA--TAGGG  1043

seq1  GAGACAGACATTTCAAACTTAAGGTAAATCATCTCCGAAGAACAGAAAGA  1100
      |||| ||| ||||| ||||| |||| ||| |||| ||||| |||||||||
seq2  GAGA-AGAAATTTC-AACTT-AGGT-AATTATCT-CGAAG-ACAGAAAGA  1087

seq1  ATTTCTGTTGTTTGGCTA-CTCTC-TAGCACCCTGTTCCCATATTCCAAA  1148
        |||   ||| |||||| ||||| ||||| |||||||| ||||  ||||
seq2  --TTC---TGTGTGGCTACCTCTCTTAGCA-CCTGTTCCTATAT--CAAA  1129

seq1  ACATTAACTAATTAATTATTCGGAATTTACTAATTCCAAATAATTTAGTT  1198
      |   | ||||  ||  ||| ||||  ||||| ||||  ||||  ||||||
seq2  A---TTACTA--TA--TATCCGGA--TTACT-ATTC--AATA--TTAGTT  1165

seq1  TGGTGCCATGACAGAGAGTTCTTGTCTGAACTGAAACCGACACATCAATT  1248
      ||||||   |||   ||| ||||||| |||||||   ||| ||||||   
seq2  TGGTGCATGGAC---GAG-TCTTGTC-GAACTGA---CGA-ACATCA---  1203

seq1  TTTTAC-ATGTTTCTATGGA  1267
       ||||| |||||||||||||
seq2  -TTTACAATGTTTCTATGGA  1222