BAC Information

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BAC

Clone NameB6Ng01-016J20
Chromosome8 (Build37)
Map Location 59,877,056 - 60,050,476
singlet/doubletdoublet
Overlap geneScrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634
Upstream geneLOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2
Downstream geneLOC100040711, 4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016J20.bB6Ng01-016J20.g
ACCDH850532DH850533
length1,0691,043
definitionDH850532|Mus musculus domesticus DNA, BAC clone: B6Ng01-016J20, 5' end.DH850533|Mus musculus domesticus DNA, BAC clone: B6Ng01-016J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,877,056 - 59,878,142)(60,049,849 - 60,050,476)
sequence
gaattccacttctcttacaacaaagccaacatgagactatattacacgag
agtaacaaacaaacagcgatagggaacagaatttcaactccagtcttgag
ataaaagagctatttgggttagcaagagtaactcagttgatagaacgctt
gccagactttcaggaataacctgatgtttggtctgaatgttcctagattg
tggctcatatgccatggggcagccaggagacttctcagtgaaaactgctt
ctgaatcaggcatagtgtcaaacatcctagtaactccagcactctgggga
agccatgggttcagtccccagtgctccatagcctggatacagaggtggac
agctataataccaaaactcagaggctggagacaggagactcagaagttca
aggtcacttgtaactatcaaacaacttgtcttaagtttaactaaatatct
cataaaatagacttgaactcaactgtgtttattcttctttttagttatgt
gaccatacatgtcacagatatgatgtagtttctgacttttcagtgtttct
aaatgccaaaaagacataggatggcacccatattgggaaatgcagtttgc
aatatgtactgcatttaacataacacaagggggaaaattagcctcagttt
cttttaaggttcatagcattaaatgccactgacctaggctgtttgtcctg
ctgcaacaaaagatcactgagtttaaattattcatttataaatatataaa
tttatttcacactattcaggagtcttggaactccaagttcaagacaccgg
cagatccggtgactgcttccaagatgatccttatgcttcagggagcagac
agacacgctgctcacatgattgtctcttggaaagcggggcacttgcttac
atacagcaggctgtagcttcaattcccactgctggagaaaagaaaagaaa
ggaaaaggaagggagagagaatgagagagagagagagagagagagagaga
gagagagagagagagagtcttttttctagacagcatttgtcaaactcact
tttgtttttgtgttgttgt
gaattcacgctgtacatcaggctggcctcaagctgagattcacctgcctc
tgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctg
cctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcg
cctctgcctctgcgcctctgcctctgcgcctctgcctctgcgcctctgcc
tctgcgcctctgcctctgcgcctctgcctctgcgcctctgcctctgcgcc
tctgcctctgcgcctctgcctctgcctctgcctctgcctctgcctctgcc
tcctctgcctctgcctcctctgcctctgcctctgcctctgcctctgcctc
tgcctctgccctctgcctctgccctctgcctctgcctctgcctctgcctc
tgcctctgcctctgccctctgcctctgcctctgcctctgccctctgccct
ctgcctctgccctctgcctctgccctctgcctctgcctctgcctctgcct
ctgccctctgcctctgcctctgccctctgcctctgcctctgcctcctctg
cctctgcctcctctgcctctgcctctgcctctgcagtgctgggctttaag
gcaggaaccgccactacccagagaaacgtctatcttcttcctctgagtcc
acctttttgctttcatgtcgattctcaaacaccatggataacactgattt
agagtcagtaggcactgcgcagaagattcagagtcacggaatagctttcc
gtgggaatgggttggggcacacattgttcatagagacatccttgtgccat
agattcataggagtttaaagttaaggtggccaggaaatatcccatgttct
ttgctcattttgagcacaagaatctcaatgacacaaagtttagtggctgc
ctcagagatccagatctctaggatctatcactacatcagccacccctcct
ccacacaacaaagaaagatgaagcagtctgttgaggtagttttatgtgtg
gattgtgcacgatcacaagcatttcatgtaacaaatacctcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_59877056_59878142
seq2: B6Ng01-016J20.b_46_1114

seq1  GAATTCCACTTCTCTTACAACAAAGCCAACATGAGACTATATTACACGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCTCTTACAACAAAGCCAACATGAGACTATATTACACGAG  50

seq1  AGTAACAAACAAACAGCGATAGGGAACAGAATTTCAACTCCAGTCTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAAACAAACAGCGATAGGGAACAGAATTTCAACTCCAGTCTTGAG  100

seq1  ATAAAAGAGCTATTTGGGTTAGCAAGAGTAACTCAGTTGATAGAACGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAGCTATTTGGGTTAGCAAGAGTAACTCAGTTGATAGAACGCTT  150

seq1  GCCAGACTTTCAGGAATAACCTGATGTTTGGTCTGAATGTTCCTAGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACTTTCAGGAATAACCTGATGTTTGGTCTGAATGTTCCTAGATTG  200

seq1  TGGCTCATATGCCATGGGGCAGCCAGGAGACTTCTCAGTGAAAACTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATATGCCATGGGGCAGCCAGGAGACTTCTCAGTGAAAACTGCTT  250

seq1  CTGAATCAGGCATAGTGTCAAACATCCTAGTAACTCCAGCACTCTGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCAGGCATAGTGTCAAACATCCTAGTAACTCCAGCACTCTGGGGA  300

seq1  AGCCATGGGTTCAGTCCCCAGTGCTCCATAGCCTGGATACAGAGGTGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGGGTTCAGTCCCCAGTGCTCCATAGCCTGGATACAGAGGTGGAC  350

seq1  AGCTATAATACCAAAACTCAGAGGCTGGAGACAGGAGACTCAGAAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAATACCAAAACTCAGAGGCTGGAGACAGGAGACTCAGAAGTTCA  400

seq1  AGGTCACTTGTAACTATCAAACAACTTGTCTTAAGTTTAACTAAATATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTTGTAACTATCAAACAACTTGTCTTAAGTTTAACTAAATATCT  450

seq1  CATAAAATAGACTTGAACTCAACTGTGTTTATTCTTCTTTTTAGTTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATAGACTTGAACTCAACTGTGTTTATTCTTCTTTTTAGTTATGT  500

seq1  GACCATACATGTCACAGATATGATGTAGTTTCTGACTTTTCAGTGTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATACATGTCACAGATATGATGTAGTTTCTGACTTTTCAGTGTTTCT  550

seq1  AAATGCCAAAAAGACATAGGATGGCACCCATATTGGGAAATGCAGTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAAAAAGACATAGGATGGCACCCATATTGGGAAATGCAGTTTGC  600

seq1  AATATGTACTGCATTTAACATAACACAAGGGGGAAAATTAGCCTCAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTACTGCATTTAACATAACACAAGGGGGAAAATTAGCCTCAGTTT  650

seq1  CTTTTAAGGTTCATAGCATTAAATGCCACTGACCTAGGCTGTTTGTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGGTTCATAGCATTAAATGCCACTGACCTAGGCTGTTTGTCCTG  700

seq1  CTGCAACAAAAGATCACTGAGTTTAAATTATTCATTTATAAATATATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACAAAAGATCACTGAGTTTAAATTATTCATTTATAAATATATAAA  750

seq1  TTTATTTCACACTATTCAGGAGTCTTGGAACTCCAAGTTCAAGACACCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCACACTATTCAGGAGTCTTGGAACTCCAAGTTCAAGACACCGG  800

seq1  CAGATCCGGTGACTGCTTCCAAGATGATCCTTATGCTTCAGGGAGCAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCGGTGACTGCTTCCAAGATGATCCTTATGCTTCAGGGAGCAGAC  850

seq1  AGACACGCTGCTCACATGATTGTCTCTTGG-AAGCGGGGCACTTGCTTAC  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGACACGCTGCTCACATGATTGTCTCTTGGAAAGCGGGGCACTTGCTTAC  900

seq1  ATACAGCAGGCTGTAGGCTCAATTCCCACTGCTGGAGAAAAAGAAAAGAA  949
      ||||||||||||||||  ||||||||||||||||||| ||||||||||||
seq2  ATACAGCAGGCTGTAGCTTCAATTCCCACTGCTGGAG-AAAAGAAAAGAA  949

seq1  AGGAAAAAGGAAAGGGAAGAGAAGAAAAGAGAAGAGAAGAGAAGAGAAGA  999
      ||| |||||||| ||  ||||||  | ||||      |||| |||| |||
seq2  AGG-AAAAGGAAGGGAGAGAGAATGAGAGAG------AGAG-AGAG-AGA  990

seq1  GAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAAGTC-TTTTTCTAGAAC  1048
      | |||| |||| |||| |||||     ||||| |||| ||||||||| ||
seq2  G-AGAG-AGAG-AGAG-AGAGA----GAGAGAGAGTCTTTTTTCTAG-AC  1031

seq1  AGCATTTGTCAAACTCACTTTTGTTTTTGTTGTTGTTGT  1087
      ||||||||||||||||||||||||||||| |||||||||
seq2  AGCATTTGTCAAACTCACTTTTGTTTTTG-TGTTGTTGT  1069

seq1: chr8_60049849_60050476
seq2: B6Ng01-016J20.g_505_1111 (reverse)

seq1  CCGAAGTATTCTGTTACATTGAAAATGCTTTGTGATCGTGCCACAAATAC  50
      |||| ||||| ||||||||   |||||| ||||||||||| |||||   |
seq2  CCGAGGTATT-TGTTACAT--GAAATGC-TTGTGATCGTG-CACAA--TC  43

seq1  CACACATAAAACTACCCTCAAACAGACTGGTGTCATCTTTTCTTTTGTTG  100
      |||||||||||||| |||| ||||||||| | ||||||||   |||||||
seq2  CACACATAAAACTA-CCTC-AACAGACTGCT-TCATCTTT--CTTTGTTG  88

seq1  TGTGGGGGAGGGGTGGCTGATGTAGTGAAAGATCCTAGGAGATCTGGATT  150
      ||||| |||||||||||||||||||||| |||||||| |||||||||| |
seq2  TGTGGAGGAGGGGTGGCTGATGTAGTGATAGATCCTA-GAGATCTGGA-T  136

seq1  CTCTTGGGGCAGCCACCTAAACTTTGGTGGTCATTTGGAGATTCTTGGTG  200
      ||| || |||||||| ||||||||||   ||||||  ||||||||| |||
seq2  CTC-TGAGGCAGCCA-CTAAACTTTG--TGTCATT--GAGATTCTT-GTG  179

seq1  CTCAAAATGAGCAAAGAACATGGGGATATTTCCTGGCCACCTTAACTTTT  250
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  CTCAAAATGAGCAAAGAACAT-GGGATATTTCCTGGCCACCTTAAC-TTT  227

seq1  AAACTCCTATGAATCTATGGCACAAGGAAGTCTCTATGAACAATGTGTG-  299
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  AAACTCCTATGAATCTATGGCACAAGGATGTCTCTATGAACAATGTGTGC  277

seq1  CCCAACCCATTCCCACGGAAAGCTATTCCGTGACTCTGAATCTTCTGCGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCCATTCCCACGGAAAGCTATTCCGTGACTCTGAATCTTCTGCGC  327

seq1  AGTGCCTACTGACTCT-AATCAGTGTTATCCATGGTGTTTGAGAATCGAC  398
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTGCCTACTGACTCTAAATCAGTGTTATCCATGGTGTTTGAGAATCGAC  377

seq1  ATGAAAGCAAAAAGGTGGACTCAGAGGAAGAAGATAGACGTTTCTCTGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCAAAAAGGTGGACTCAGAGGAAGAAGATAGACGTTTCTCTGGG  427

seq1  TAGTGGCGGTTCCTGCCTTAAAGCCCAGCACTGCAGAGGCAGAGGCAGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCGGTTCCTGCCTTAAAGCCCAGCACTGCAGAGGCAGAGGCAGAG  477

seq1  GCAGAGGAGGCAGAGGCAGAGGAGGCAGAGGCAGAGGCAGAGGGCAGAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAGGCAGAGGCAGAGGAGGCAGAGGCAGAGGCAGAGGGCAGAGG  527

seq1  CAGAGGCAGAGGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGGCAGAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGAGGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGGCAGAGG  577

seq1  CAGAGGGCAGAGGCAGAGGGCAGAGGGCAG  628
      ||||||||||||||||||||||||||||||
seq2  CAGAGGGCAGAGGCAGAGGGCAGAGGGCAG  607