BAC Information

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BAC

Clone NameB6Ng01-017A16
Chromosome8 (Build37)
Map Location 55,535,023 - 55,655,234
singlet/doubletdoublet
Overlap geneSpcs3, Asb5
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneSpata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017A16.bB6Ng01-017A16.g
ACCDH850835DH850836
length9671,135
definitionDH850835|Mus musculus domesticus DNA, BAC clone: B6Ng01-017A16, 5' end.DH850836|Mus musculus domesticus DNA, BAC clone: B6Ng01-017A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,654,271 - 55,655,234)(55,535,023 - 55,536,167)
sequence
gaattccactgaactgtttctgtgctcagctctccatctatgcactgcag
taaggttgcaaagcctgagtcattacgttatttcccaggccctcatttct
taaatgccgtgccactttaaagaggacttgacatagaaatttaagaatgc
ctcagaagtttctctatggctctcgtgtttaaacaaatttctagtgcagt
taggggaaaacaaaacaaaacaaaacaaaacaaaaccacaaccaaccaaa
acaaacaaaaacctattatccccactttgctagaccagtataactcctta
ttgctttctaagcactctctttatacccacagataattgtagctttcact
cctcatctaagaagcttctcttgggagcaaatggaaaccatcacagaaaa
ccacaactggacacaatagagagatccacagatgacgagaagcctggctc
caatggatccaacgccatcatagctctgccactatggctcagaaaacatt
gggggagagagggagaaaaggctacaagagctagagcaccagaaagtctt
ctgtgaatccagttctcctgtaaatggctgcatgagcaagaccacgacaa
tggcaacatcagtggatgtgcttatgtgaaagggagaaagtatcacaggg
tcccattcccagacaaagaactatgggtcacaaatgacttctgggagaag
gagaatcggcttctactaagaatgaacacacttattggttttccagtgcg
gaggggaaagtgatatacaaatgactaaccaaatcaggttctatcaagat
acatatacacatacacatacatatgtgtgtatgttaatacatatatacac
atataaatataaacacatatatatatataaaaccttggagagagagagag
agcataatagtcaaggaaaaatatcaacttgaggaatagttggagaagtt
ggaagtggaagggaggg
gaattctttttagtcccatgtaaactggaagtaataatgaaaaactaaga
tttaaaaaaaaaaaaataaagaaaaacgttgaagaaagtaagacgtttcg
gtgtaaggcactcccatcaaaatgtgtaattaacagtagtaactagcatt
tgggatgctagatagtccagtctgaccttatgccaagatcatggaacaga
atatggttgtgtggtaaatataatctgggccacacataagaactgatcaa
gccagattgtattaactgtctgtccaagtcacactgggaaatgaggcatc
tgctgtttcctgattctaacagtttggggattcccagataaaaagatgtg
tcattacaatcttgtggtgtagacaggggagggcatgattcagccaaagc
aatctttggactttccctccactgaagaacctctgggaaggcttcctgga
tgctaaactcagtaatccttaaaactgacatcagctgttcctctctctga
gcatctggagtcatgtctcttccctaaggagacaccaacagatcaagtca
aacatgcaccctgtactaaagggacatgaaaaagaagatgaaggcaaaat
gcaggcaacatattaatcagacaaaactcaaacaattgcttccattacag
ttgtgataaaaggctgtgagcagaaactcaggatagtaggaaagcacagt
ttgaatgttatctggaagtcatgaatccctgagagtacattgcttaatta
ctttgtatgggtagtatcattctctcactttgtcaagtctctctaacatt
ccaagactggaaattcagattcataatacgtaagaacaggcctgagaaaa
ccctatttcagtagagatccatgccttagcattttagaatgtatggcggt
gtctacaaacatcctacctggacagttgtcatggattatctgctcagaaa
tgcctgagtgcttactttttgttggctggattgtataaagaacgcactta
tgcagcaactagaggggaaatttgccaagcgttaagcaaaaaatgatggg
ccgctgcctagcatacctaagagaaaagtcctcgatgctatgcatctcag
ttccgtcgatggtgaggcagaaatgaaaagacgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_55654271_55655234
seq2: B6Ng01-017A16.b_51_1017 (reverse)

seq1  CCCTCCC-TCCAC-TCCAACTTCTCCAACTATTCCTCAAGTTGATA-TTT  47
      ||||||| ||||| |||||||||||||||||||||||||||||||| |||
seq2  CCCTCCCTTCCACTTCCAACTTCTCCAACTATTCCTCAAGTTGATATTTT  50

seq1  TCCTTGACTATTATGCTCTCTCTCTCTCTCCAAGGTTTTATATATATATA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGACTATTATGCTCTCTCTCTCTCTCCAAGGTTTTATATATATATA  100

seq1  TGTGTTTATATTTATATGTGTATATATGTATTAACATACACACATATGTA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTATATTTATATGTGTATATATGTATTAACATACACACATATGTA  150

seq1  TGTGTATGTGTATATGTATCTTGATAGAACCTGATTTGGTTAGTCATTTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTGTATATGTATCTTGATAGAACCTGATTTGGTTAGTCATTTG  200

seq1  TATATCACTTTCCCCTCCGCACTGGAAAACCAATAAGTGTGTTCATTCTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCACTTTCCCCTCCGCACTGGAAAACCAATAAGTGTGTTCATTCTT  250

seq1  AGTAGAAGCCGATTCTCCTTCTCCCAGAAGTCATTTGTGACCCATAGTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGCCGATTCTCCTTCTCCCAGAAGTCATTTGTGACCCATAGTTC  300

seq1  TTTGTCTGGGAATGGGACCCTGTGATACTTTCTCCCTTTCACATAAGCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGGGAATGGGACCCTGTGATACTTTCTCCCTTTCACATAAGCAC  350

seq1  ATCCACTGATGTTGCCATTGTCGTGGTCTTGCTCATGCAGCCATTTACAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTGATGTTGCCATTGTCGTGGTCTTGCTCATGCAGCCATTTACAG  400

seq1  GAGAACTGGATTCACAGAAGACTTTCTGGTGCTCTAGCTCTTGTAGCCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGGATTCACAGAAGACTTTCTGGTGCTCTAGCTCTTGTAGCCTT  450

seq1  TTCTCCCTCTCTCCCCCAATGTTTTCTGAGCCATAGTGGCAGAGCTATGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTCTCTCCCCCAATGTTTTCTGAGCCATAGTGGCAGAGCTATGA  500

seq1  TGGCGTTGGATCCATTGGAGCCAGGCTTCTCGTCATCTGTGGATCTCTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTTGGATCCATTGGAGCCAGGCTTCTCGTCATCTGTGGATCTCTCT  550

seq1  ATTGTGTCCAGTTGTGGTTTTCTGTGATGGTTTCCATTTGCTCCCAAGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTCCAGTTGTGGTTTTCTGTGATGGTTTCCATTTGCTCCCAAGAG  600

seq1  AAGCTTCTTAGATGAGGAGTGAAAGCTACAATTATCTGTGGGTATAAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTTAGATGAGGAGTGAAAGCTACAATTATCTGTGGGTATAAAGA  650

seq1  GAGTGCTTAGAAAGCAATAAGGAGTTATACTGGTCTAGCAAAGTGGGGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTTAGAAAGCAATAAGGAGTTATACTGGTCTAGCAAAGTGGGGAT  700

seq1  AATAGGTTTTTGTTTGTTTTGGTTGGTTGTGGTTTTGTTTTGTTTTGTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTTTTGTTTGTTTTGGTTGGTTGTGGTTTTGTTTTGTTTTGTTT  750

seq1  TGTTTTGTTTTCCCCTAACTGCACTAGAAATTTGTTTAAACACGAGAGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTCCCCTAACTGCACTAGAAATTTGTTTAAACACGAGAGCC  800

seq1  ATAGAGAAACTTCTGAGGCATTCTTAAATTTCTATGTCAAGTCCTCTTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAACTTCTGAGGCATTCTTAAATTTCTATGTCAAGTCCTCTTTA  850

seq1  AAGTGGCACGGCATTTAAGAAATGAGGGCCTGGGAAATAACGTAATGACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCACGGCATTTAAGAAATGAGGGCCTGGGAAATAACGTAATGACT  900

seq1  CAGGCTTTGCAACCTTACTGCAGTGCATAGATGGAGAGCTGAGCACAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTGCAACCTTACTGCAGTGCATAGATGGAGAGCTGAGCACAGAA  950

seq1  ACAGTTCAGTGGAATTC  964
      |||||||||||||||||
seq2  ACAGTTCAGTGGAATTC  967

seq1: chr8_55535023_55536167
seq2: B6Ng01-017A16.g_68_1202

seq1  GAATTCTTTTTAGTCCCATGTAAACTGGAAGTAATAATGAAAAACTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAGTCCCATGTAAACTGGAAGTAATAATGAAAAACTAAGA  50

seq1  TTTAAAAAAAAAAAAATAAAGAAAAACGTTGAAGAAAGTAAGACGTTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAAAAAAATAAAGAAAAACGTTGAAGAAAGTAAGACGTTTCG  100

seq1  GTGTAAGGCACTCCCATCAAAATGTGTAATTAACAGTAGTAACTAGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGGCACTCCCATCAAAATGTGTAATTAACAGTAGTAACTAGCATT  150

seq1  TGGGATGCTAGATAGTCCAGTCTGACCTTATGCCAAGATCATGGAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGCTAGATAGTCCAGTCTGACCTTATGCCAAGATCATGGAACAGA  200

seq1  ATATGGTTGTGTGGTAAATATAATCTGGGCCACACATAAGAACTGATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTGTGTGGTAAATATAATCTGGGCCACACATAAGAACTGATCAA  250

seq1  GCCAGATTGTATTAACTGTCTGTCCAAGTCACACTGGGAAATGAGGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATTGTATTAACTGTCTGTCCAAGTCACACTGGGAAATGAGGCATC  300

seq1  TGCTGTTTCCTGATTCTAACAGTTTGGGGATTCCCAGATAAAAAGATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTCCTGATTCTAACAGTTTGGGGATTCCCAGATAAAAAGATGTG  350

seq1  TCATTACAATCTTGTGGTGTAGACAGGGGAGGGCATGATTCAGCCAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACAATCTTGTGGTGTAGACAGGGGAGGGCATGATTCAGCCAAAGC  400

seq1  AATCTTTGGACTTTCCCTCCACTGAAGAACCTCTGGGAAGGCTTCCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGGACTTTCCCTCCACTGAAGAACCTCTGGGAAGGCTTCCTGGA  450

seq1  TGCTAAACTCAGTAATCCTTAAAACTGACATCAGCTGTTCCTCTCTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACTCAGTAATCCTTAAAACTGACATCAGCTGTTCCTCTCTCTGA  500

seq1  GCATCTGGAGTCATGTCTCTTCCCTAAGGAGACACCAACAGATCAAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGGAGTCATGTCTCTTCCCTAAGGAGACACCAACAGATCAAGTCA  550

seq1  AACATGCACCCTGTACTAAAGGGACATGAAAAAGAAGATGAAGGCAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCACCCTGTACTAAAGGGACATGAAAAAGAAGATGAAGGCAAAAT  600

seq1  GCAGGCAACATATTAATCAGACAAAACTCAAACAATTGCTTCCATTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAACATATTAATCAGACAAAACTCAAACAATTGCTTCCATTACAG  650

seq1  TTGTGATAAAAGGCTGTGAGCAGAAACTCAGGATAGTAGGAAAGCACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATAAAAGGCTGTGAGCAGAAACTCAGGATAGTAGGAAAGCACAGT  700

seq1  TTGAATGTTATCTGGAAGTCATGAATCCCTGAGAGTACATTGCTTAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTTATCTGGAAGTCATGAATCCCTGAGAGTACATTGCTTAATTA  750

seq1  CTTTGTATGGGTAGTATCATTCTCTCACTTTGTCAAGTCTCTCTAACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATGGGTAGTATCATTCTCTCACTTTGTCAAGTCTCTCTAACATT  800

seq1  CCAAGACTGGAAATTCAGATTCATAATACGTAAGAACAGGCCTGAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACTGGAAATTCAGATTCATAATACGTAAGAACAGGCCTGAGAAAA  850

seq1  CACTATTTCAGTAGAGATCCATGCCTTAGCATTTTAGAATGTATGGCGGT  900
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTTCAGTAGAGATCCATGCCTTAGCATTTTAGAATGTATGGCGGT  900

seq1  GTCTACAAACATCCTACCTGGACAGTTGTCATGGATTATCTGCTCAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAACATCCTACCTGGACAGTTGTCATGGATTATCTGCTCAGAAA  950

seq1  TGCCTGAGTGCTTACCTTTTGTTGGCTGGATTGTATTAAAGAACGCACTT  1000
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  TGCCTGAGTGCTTACTTTTTGTTGGCTGGATTGTA-TAAAGAACGCACTT  999

seq1  ATGCAGCAAACTAGAGGGGAAATTTTGCCAAGCGTACAGCAGAAAATGAT  1050
      ||||||| |||||||||||||| ||||||||||||  |||| ||||||||
seq2  ATGCAGC-AACTAGAGGGGAAA-TTTGCCAAGCGTTAAGCAAAAAATGAT  1047

seq1  GGG-CGCTG-CTAGCATTACTAAAGAAGGAAAAGTCCTCGATTGCTATGC  1098
      ||| ||||| |||||| |||  ||||  ||||||||||||| ||||||||
seq2  GGGCCGCTGCCTAGCA-TACCTAAGA--GAAAAGTCCTCGA-TGCTATGC  1093

seq1  ATCTCAGTTACTGTCTGAAATGTGTGAGGCAGAAATAGAAAGACGAA  1145
      ||||||||| | |||    ||| |||||||||||||  |||||||||
seq2  ATCTCAGTT-CCGTC---GATG-GTGAGGCAGAAATGAAAAGACGAA  1135