BAC Information

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BAC

Clone NameB6Ng01-017E22
Chromosome8 (Build37)
Map Location 30,084,375 - 30,235,221
singlet/doubletdoublet
Overlap geneUnc5d
Upstream geneEG666422, LOC666430, EG666446, LOC100042598
Downstream geneLOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017E22.bB6Ng01-017E22.g
ACCDH851030DH851031
length1,0421,054
definitionDH851030|Mus musculus domesticus DNA, BAC clone: B6Ng01-017E22, 5' end.DH851031|Mus musculus domesticus DNA, BAC clone: B6Ng01-017E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,234,307 - 30,235,221)(30,084,375 - 30,085,433)
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
atagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgtccactctcgccctacctattcaacattg
tacttgaagtcctagccagagcaattaaacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccttaaaaattccaccagagtactcctaagcc
tgataaacagcttcaatgaagtagctggatataaaattaactgatttaat
tttttacttttggattatatcttattacttggccctggctgactcttaac
atgccttatggaccagatttaccttaaactcacagacatccctctgcctc
tgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctg
cctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcc
tctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctc
aagtgctggatttaaaggcatgaaccatcacacctagccatatttttgat
taaaaaaaagaagaagaccaactttaggcatatgcaatcaatgtagatat
agaacattccaaacttctcatttcctttgttgggctggcttatatttgga
aggcagtgaatagaagaattggatatcagtgtctcggcagcaaaaggagg
aatgttctgccctggacaaaggtctcacccatcatttccattgtcctatc
cctcctcttggagtcctttccatttatcagaccctgactagatctgctac
aaactaactcactaaataacttaaaaataaaaaccaactgatacaccaaa
gtctgtcattgtgacccagcccatttcccctgggtttctctcctcatccc
agttcatagctgacagttctgagcctagcctgtgcatgaccc
gaattcttcagtcagacattcttgcatacaaataagctgaggtgtcaaat
agggagtcttctggaatgtccattctctactgactggtgctggctaggtc
agagaatacagcattcccaacagggaagtattttgcacaatgcttagcag
atgtatctgtcagagcatgttttcaacataggcacaacaaaatgtcaggc
tgggtgggatcacattcttcttatactgaggtgtgccttacataagtcag
caccattcctgcctgggctccctgcatgatgtacaggtgtgattgttgcc
tttcgatagccattagtccttgtcccacaggtactgaaggaacatgtagg
gaagaggagatgcacaataaaaagattgttattttttaaaaggtttattt
tttttcattttatgtttatgggtgttttgtctgcatgtataattgtacac
cttgtgctcgcagtgggcagagggtatggagctgctgaagagggtggaat
tcctgggaactggagttactgagagttgtgaggtgcatgtgggtgcaggt
atcaaatctagatcatctggaaaaacagtgagtccttctaacctctgagt
tatctctccagccattaatgttttctatattaataaatgagccacattgt
tataagcagcgttgtagaataaaataatttgtacataagaaattcctgaa
agtatccttttgtttccaaaccactttacacagacctctgtcagtgtgca
tttaagttcgttgtaactatttcagtatgctttttctttaatggcttttt
tatttattttccttttctgtttatggcttctgcccaggtgtttgcttcac
aattctgttcaccactattcaaatctaagtgattttggatacattctgct
gggaaatgatgggaaatcaaatttacataagcttctgaaataaatacgtg
cacagtacctcatggatatactctaaagacaagggagggttacaacatat
ggcaacactaactaaagaacctgaaattcttgcaacttttcccttatatc
tagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_30234307_30235221
seq2: B6Ng01-017E22.b_186_1087 (reverse)

seq1  GGGTCATGCACAGGCTAGGGCTCAGAACTGTGCAGCTATGAACTGGGATG  50
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  GGGTCATGCACAGGCTA-GGCTCAGAACTGT-CAGCTATGAACTGGGATG  48

seq1  AGGAGGAGAGATCCCAGGGGGAAAATGGGCTGGGTCACAATGACAGACTT  100
      |||| |||| | ||||||||  ||||||||||||||||||||||||||||
seq2  AGGA-GAGA-AACCCAGGGG--AAATGGGCTGGGTCACAATGACAGACTT  94

seq1  TGGTGGTATTCAGTTTTGGTTTTTTATTTTTAAGTTATTTTAGTGAGTTA  150
      |||| ||| ||||||   | ||||||||||||||||| ||||||||||||
seq2  TGGT-GTA-TCAGTT---GGTTTTTATTTTTAAGTTA-TTTAGTGAGTTA  138

seq1  GTTTTGTAGCAGATCTAGTCAGGGTCTGATAAATGGAAAGGACTCCAAGA  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTTGTAGCAGATCTAGTCAGGGTCTGATAAATGGAAAGGACTCCAAGA  187

seq1  GGAGGGATAGGACAATGGAAATGATGGGTGAGACCTTTGTCCAGGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGATAGGACAATGGAAATGATGGGTGAGACCTTTGTCCAGGGCAGA  237

seq1  ACATTCCTCCTTTTGCTGCCGAGACACTGATATCCAATTCTTCTATTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTCCTTTTGCTGCCGAGACACTGATATCCAATTCTTCTATTCAC  287

seq1  TGCCTTCCAAATATAAGCCAGCCCAACAAAGGAAATGAGAAGTTTGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCAAATATAAGCCAGCCCAACAAAGGAAATGAGAAGTTTGGAAT  337

seq1  GTTCTATATCTACATTGATTGCATATGCCTAAAGTTGGTCTTCTTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATATCTACATTGATTGCATATGCCTAAAGTTGGTCTTCTTCTTTT  387

seq1  TTTTAATCAAAAATATGGCTAGGTGTGATGGTTCATGCCTTTAAATCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCAAAAATATGGCTAGGTGTGATGGTTCATGCCTTTAAATCCAG  437

seq1  CACTTGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAG  487

seq1  GCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGC  537

seq1  AGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAG  587

seq1  AGGCAGAGGCAGAGGGATGTCTGTGAGTTTAAGGTAAATCTGGTCCATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGAGGGATGTCTGTGAGTTTAAGGTAAATCTGGTCCATAA  637

seq1  GGCATGTTAAGAGTCAGCCAGGGCCAAGTAATAAGATATAATCCAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTTAAGAGTCAGCCAGGGCCAAGTAATAAGATATAATCCAAAAGT  687

seq1  AAAAAATTAAATCAGTTAATTTTATATCCAGCTACTTCATTGAAGCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAAATCAGTTAATTTTATATCCAGCTACTTCATTGAAGCTGTT  737

seq1  TATCAGGCTTAGGAGTACTCTGGTGGAATTTTTAAGGTCACTTATATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGCTTAGGAGTACTCTGGTGGAATTTTTAAGGTCACTTATATATA  787

seq1  CTATCATATCATCTGCAAAAAGTGATATTTTGACTTCTTCCTTTCCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATATCATCTGCAAAAAGTGATATTTTGACTTCTTCCTTTCCAATT  837

seq1  TGTATCCCCTTGATCTCCTTTTGTTGTTTAATTGCTCTGGCTAGGACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCCTTGATCTCCTTTTGTTGTTTAATTGCTCTGGCTAGGACTTC  887

seq1  AAGTACAATGTTGAA  915
      |||||||||||||||
seq2  AAGTACAATGTTGAA  902

seq1: chr8_30084375_30085433
seq2: B6Ng01-017E22.g_67_1120

seq1  GAATTCTTCAGTCAGACATTCTTGCATACAAATAAGCTGAGGTGTCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGTCAGACATTCTTGCATACAAATAAGCTGAGGTGTCAAAT  50

seq1  AGGGAGTCTTCTGGAATGTCCATTCTCTACTGACTGGTGCTGGCTAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTCTTCTGGAATGTCCATTCTCTACTGACTGGTGCTGGCTAGGTC  100

seq1  AGAGAATACAGCATTCCCAACAGGGAAGTATTTTGCACAATGCTTAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATACAGCATTCCCAACAGGGAAGTATTTTGCACAATGCTTAGCAG  150

seq1  ATGTATCTGTCAGAGCATGTTTTCAACATAGGCACAACAAAATGTCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTGTCAGAGCATGTTTTCAACATAGGCACAACAAAATGTCAGGC  200

seq1  TGGGTGGGATCACATTCTTCTTATACTGAGGTGTGCCTTACATAAGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGATCACATTCTTCTTATACTGAGGTGTGCCTTACATAAGTCAG  250

seq1  CACCATTCCTGCCTGGGCTCCCTGCATGATGTACAGGTGTGATTGTTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTCCTGCCTGGGCTCCCTGCATGATGTACAGGTGTGATTGTTGCC  300

seq1  TTTCGATAGCCATTAGTCCTTGTCCCACAGGTACTGAAGGAACATGTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGATAGCCATTAGTCCTTGTCCCACAGGTACTGAAGGAACATGTAGG  350

seq1  GAAGAGGAGATGCACAATAAAAAGATTGTTATTTTTTAAAAGGTTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAGATGCACAATAAAAAGATTGTTATTTTTTAAAAGGTTTATTT  400

seq1  TTTTTCATTTTATGTTTATGGGTGTTTTGTCTGCATGTATAATTGTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTTTATGTTTATGGGTGTTTTGTCTGCATGTATAATTGTACAC  450

seq1  CTTGTGCTCGCAGTGGGCAGAGGGTATGGAGCTGCTGAAGAGGGTGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTCGCAGTGGGCAGAGGGTATGGAGCTGCTGAAGAGGGTGGAAT  500

seq1  TCCTGGGAACTGGAGTTACTGAGAGTTGTGAGGTGCATGTGGGTGCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGAACTGGAGTTACTGAGAGTTGTGAGGTGCATGTGGGTGCAGGT  550

seq1  ATCAAATCTAGATCATCTGGAAAAACAGTGAGTCCTTCTAACCTCTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCTAGATCATCTGGAAAAACAGTGAGTCCTTCTAACCTCTGAGT  600

seq1  TATCTCTCCAGCCATTAATGTTTTCTATATTAATAAATGAGCCACATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCCAGCCATTAATGTTTTCTATATTAATAAATGAGCCACATTGT  650

seq1  TATAAGCAGCGTTGTAGAATAAAATAATTTGTACATAAGAAATTCCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCAGCGTTGTAGAATAAAATAATTTGTACATAAGAAATTCCTGAA  700

seq1  AGTATCCTTTTGTTTCCAAACCACTTTACACAGACCTCTGTCAGTGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCTTTTGTTTCCAAACCACTTTACACAGACCTCTGTCAGTGTGCA  750

seq1  TTTAAGTTCGTTGTAACTATTTCAGTATGC-TTTTCTTTAATGGCATTTT  799
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  TTTAAGTTCGTTGTAACTATTTCAGTATGCTTTTTCTTTAATGGCTTTTT  800

seq1  TATTTATTT--CCTTTCTGTTTATGGCTTCTGCCCAGGTGTTTGC-TCAC  846
      |||||||||  | |||||||||||||||||||||||||||||||| ||||
seq2  TATTTATTTTCCTTTTCTGTTTATGGCTTCTGCCCAGGTGTTTGCTTCAC  850

seq1  AATTCTGTTCACCAACTATTCAAAATCTAAGTGATTTTGGATACATTCTG  896
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  AATTCTGTTCACC-ACTATTC-AAATCTAAGTGATTTTGGATACATTCTG  898

seq1  CTGGAAAATGATGGGAAATCAAAATTTACAATAAGCTTCTGAAATAAATT  946
      |||| ||||||||||||||| |||||||| |||||||||||||||||| |
seq2  CTGGGAAATGATGGGAAATC-AAATTTAC-ATAAGCTTCTGAAATAAA-T  945

seq1  ACTTGCACAGTACCTCATGGATAATACTCTAAAGACAAGGTAGGGGTTAC  996
      || ||||||||||||||||||| ||||||||||||||||| | |||||| 
seq2  ACGTGCACAGTACCTCATGGAT-ATACTCTAAAGACAAGGGA-GGGTTA-  992

seq1  CAACAATATGGTAACACATACTAGAAGAGCTGAAATTTCTAGCATCTTTC  1046
      |||| |||||| |||||  |||| |  | |||||| |||| ||| |||| 
seq2  CAAC-ATATGGCAACACTAACTAAAGAACCTGAAA-TTCTTGCAACTTTT  1040

seq1  CCTTTAT-TCTAGT  1059
      || |||| ||||||
seq2  CCCTTATATCTAGT  1054