BAC Information

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BAC

Clone NameB6Ng01-017G12
Chromosome8 (Build37)
Map Location 16,668,496 - 16,790,375
singlet/doubletdoublet
Overlap geneCsmd1
Upstream geneEG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017G12.bB6Ng01-017G12.g
ACCDH851102DH851103
length832612
definitionDH851102|Mus musculus domesticus DNA, BAC clone: B6Ng01-017G12, 5' end.DH851103|Mus musculus domesticus DNA, BAC clone: B6Ng01-017G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,668,496 - 16,669,333)(16,789,768 - 16,790,375)
sequence
gaattctctcctacgtgtgctatcgaaataatttcacacatgctgtcgat
tgactgatttttctgattcacttgggtactgcttgtgacatgagctttgt
ttgtgacaattatctactctccagacaataaacgcaagcgaatttcgccc
agacctaaatggcatttgcaggagcattcgctctttactaactggagcat
gtgcccctcatgctacacttcatgggcatcaataatgcctcctgggttgt
taaaactctctaatgaaaataacttcaaataaaaactctattgtgggaag
tacagagactatgcttaatgtctaaatgatgcaagggtttccaacatctt
tgggaactggaggagaattgatttccgtatttctttaacctgaatatgca
aagaattcttttcccattacactaattctgtgaactgacattaggttgtt
agaagaaacccatgaaaacctcaaccgcattaaccactgcatttccctgc
agttcatgcaaagctaagacatcctacaatcaagattctgtagagatctt
tgaaattggtgccaaaggggaccacccccttatctgacatcctctgtggg
gacagtggatttatgagcaagctcatcacaatctgacataagaacatttt
tcatctgtatgggattggccattggtaggatcttctgtcattagagccag
tccattcaagttgatgcccacatgttcaaatgtgacataaacgccttaag
caacccaaatcatatgacgctgtccctactctccctgccataatgggatc
aatgagaattcttcccaggttcagaaatccag
gaattctcctttaaagggacgggggttcggtttatcgctctcttgctttt
ctctctctcttgcttttctctctctcttgcttcttgctctcttgcttctt
gcactctgttcctgaagatgtaagaataaagctttgccgcagaagattct
ggtcggtggtgttcttcctagcccgccgcgagaacgcgtctaataacact
gatgagcatgtcacatcagagccttacactgctaagaatgggcagtgtag
agcagtaggcaaaacaccctgctctaacactctacttgtgttaaaacatc
tcctttgtctttcagctcaggaactctgtgaccttggaccagccatttaa
tttttgtctttccgaataaatttcccttctgaaaaattaaggtggaatga
caaggttaactctgagattctttgcaattctgtggctgaaggctgacgtt
tatgcaggccaagaagcctggatttgaaccctaaatacatccctcaccgt
tgcagaatagtctgtgtgaatggcaaggtagatagtgctctttaggccca
tctctaaatgttgcctgaaagatgcctgccctatgcggttgatggtaaac
ttagatattgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_16668496_16669333
seq2: B6Ng01-017G12.b_39_870

seq1  GAATTCTAGCAGACGTGTGCTAAGGAAATAATTTCACAGATGCTGTCAAT  50
      |||||||  |  ||||||||||  |||||||||||||| |||||||| ||
seq2  GAATTCTCTCCTACGTGTGCTATCGAAATAATTTCACACATGCTGTCGAT  50

seq1  AAACTGATTTTTCTGATTCACTTGGGTACTGCTTGTGACATGAGCTTTGT  100
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGATTTTTCTGATTCACTTGGGTACTGCTTGTGACATGAGCTTTGT  100

seq1  TTGTGACAATTATCTACTCTCCAGACAATAAACGCAAGCGAATTTCGTAA  150
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  TTGTGACAATTATCTACTCTCCAGACAATAAACGCAAGCGAATTTCG-CC  149

seq1  AAGACCTAAATGGCATTTGCAGGAGCATTCGCTCTTTACTAAGTGGAGCA  200
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGACCTAAATGGCATTTGCAGGAGCATTCGCTCTTTACTAACTGGAGCA  199

seq1  TGTGCCCCTCATGCTACACTTCATGGGCATCAATATTGCAGCCTGGGTTT  250
      ||||||||||||||||||||||||||||||||||| |||  |||||||| 
seq2  TGTGCCCCTCATGCTACACTTCATGGGCATCAATAATGCCTCCTGGGTTG  249

seq1  TTAAAACTCTCTATTGGAAATAACTTCAAATAAAAACTCTATTGTGGGAA  300
      ||||||||||||| || |||||||||||||||||||||||||||||||||
seq2  TTAAAACTCTCTAATGAAAATAACTTCAAATAAAAACTCTATTGTGGGAA  299

seq1  GTAGAGAGACTATGCTTAATGTCTAAATAGTGCAAGGGTTTCCAATATCT  350
      ||| ||||||||||||||||||||||||  ||||||||||||||| ||||
seq2  GTACAGAGACTATGCTTAATGTCTAAATGATGCAAGGGTTTCCAACATCT  349

seq1  TTGGGAACTGGAGGAGAATTGTTTTCCGTATTTCTTTAACCAGATAATAC  400
      ||||||||||||||||||||| ||||||||||||||||||| ||  || |
seq2  TTGGGAACTGGAGGAGAATTGATTTCCGTATTTCTTTAACCTGAATATGC  399

seq1  ATAGATTTTTTTTCCTAAGAGAGTAATTCTGTAAAGTGTCATTAGGTTGT  450
      | ||| || |||||| |  | | ||||||||| || || |||||||||||
seq2  AAAGAATTCTTTTCCCATTACACTAATTCTGTGAACTGACATTAGGTTGT  449

seq1  AAGAAGAAGCCCATGTAAACCTCAACCACAGCAACCACTGCATTTCCCTG  500
       ||||||| |||||| ||||||||||| ||  ||||||||||||||||||
seq2  TAGAAGAAACCCATGAAAACCTCAACCGCATTAACCACTGCATTTCCCTG  499

seq1  CAGTTCATGCAAAGCTAAGACATCCTGTAATCAAGATTCTGTAGAGATCT  550
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  CAGTTCATGCAAAGCTAAGACATCCTACAATCAAGATTCTGTAGAGATCT  549

seq1  TTGGAATTGGTGCCAAAGGGGACCACCCCCTTATCTGTCATCCTCTGTGG  600
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGAAATTGGTGCCAAAGGGGACCACCCCCTTATCTGACATCCTCTGTGG  599

seq1  GGACAGTGGATTTATGACCAAGCTCATCACAATCTGACATAAGAACATTT  650
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGACAGTGGATTTATGAGCAAGCTCATCACAATCTGACATAAGAACATTT  649

seq1  TTCATCTGTATGGGATTGGTCATTGGTAGGATCTTCTGTCATTAAGAGCC  700
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  TTCATCTGTATGGGATTGGCCATTGGTAGGATCTTCTGTCATT-AGAGCC  698

seq1  AGTCCATTCAAGTTGATGGCCACATGTTCAAAATGTGAGAATAAAGGCCT  750
      |||||||||||||||||| |||||||||| ||||||||  ||||| ||||
seq2  AGTCCATTCAAGTTGATGCCCACATGTTC-AAATGTGA-CATAAACGCCT  746

seq1  TAAGCAACACAAATAAGAAGAGGCTGTCCCTACTCTCCCTGCCATAATGG  800
      |||||||| ||||| | | || ||||||||||||||||||||||||||||
seq2  TAAGCAACCCAAATCATATGACGCTGTCCCTACTCTCCCTGCCATAATGG  796

seq1  GATCAAGGAGAAATTCTTCCCGTGGTTGAGAAATCCAG  838
      |||||| ||| ||||||||||  |||| ||||||||||
seq2  GATCAATGAG-AATTCTTCCC-AGGTTCAGAAATCCAG  832

seq1: chr8_16789768_16790375
seq2: B6Ng01-017G12.g_64_669 (reverse)

seq1  ATCTAACTCTACCCTCAACCCCATAGGGCAGGCATCTTTGAGCCAACATT  50
      |||||| | |||| |||||| |||||||||||||||||| || |||||||
seq2  ATCTAAGTTTACCATCAACCGCATAGGGCAGGCATCTTTCAGGCAACATT  50

seq1  TAGAGATGGGCCTAAAGAACATTATCTAACTTGCCAAACACACAGACTAT  100
      |||||||||||||||||| || |||||| |||||||  ||||||||||||
seq2  TAGAGATGGGCCTAAAGAGCACTATCTACCTTGCCATTCACACAGACTAT  100

seq1  TCTGCAACGGTGAGGGATGTAACTAGGGTTCAAATCCAGGCTTCTTGGAC  150
      |||||||||||||||||||||  ||||||||||||||||||||||||| |
seq2  TCTGCAACGGTGAGGGATGTATTTAGGGTTCAAATCCAGGCTTCTTGGCC  150

seq1  TGCATAAACGTCAGCCTTCAGCCACAGAATTGCAAAGAATCTCAGAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAACGTCAGCCTTCAGCCACAGAATTGCAAAGAATCTCAGAGTTA  200

seq1  ACCTTGTCATTCCACCTTAATTTTTCAGAAGGGAAAATTTATTCTGAAAG  250
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  ACCTTGTCATTCCACCTTAATTTTTCAGAAGGG-AAATTTATTCGGAAAG  249

seq1  ACAAAAATTAAATGGCTGGTCCAAGGTCACAGAGTTCCTGAGCTGAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTAAATGGCTGGTCCAAGGTCACAGAGTTCCTGAGCTGAAAGA  299

seq1  CAAAGGAGAGGTCTGAACACAAGTAGAGTGATAGAGCAGGGTGTTCTGCC  350
      ||||||||| || | ||||||||||||||| |||||||||||||| ||||
seq2  CAAAGGAGATGTTTTAACACAAGTAGAGTGTTAGAGCAGGGTGTTTTGCC  349

seq1  TACTGCTCTACACTGCCCATTCTTAGCAGTGTAAGGCTCTGATGTGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTCTACACTGCCCATTCTTAGCAGTGTAAGGCTCTGATGTGACAT  399

seq1  GCTCATCAGTGTTATTAGACGCGTTCTCACGACCGGCCAGGAAGAACACC  450
      |||||||||||||||||||||||||||| || | ||| ||||||||||||
seq2  GCTCATCAGTGTTATTAGACGCGTTCTCGCGGCGGGCTAGGAAGAACACC  449

seq1  ACAGACCAGAATCTTCTGCGGCAAAGCTTTATTCTTACATCTTCAGGAAC  500
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACCAGAATCTTCTGCGGCAAAGCTTTATTCTTACATCTTCAGGAAC  499

seq1  AGAGTGCAAGAAGCAAGAGAGCAAGAAGCAAGAGAGAGAGAAAAGCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCAAGAAGCAAGAGAGCAAGAAGCAAGAGAGAGAGAAAAGCAAGA  549

seq1  GAGAGAGAAAAGCAAGAGAGCGAAAAAGCGAAACCCCGTCCCTTTTTAAG  600
      ||||||||||||||||||||||| ||| |||| ||||||||| ||| |||
seq2  GAGAGAGAAAAGCAAGAGAGCGATAAACCGAACCCCCGTCCC-TTTAAAG  598

seq1  GAGAATTC  608
      ||||||||
seq2  GAGAATTC  606