BAC Information

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BAC

Clone NameB6Ng01-017H04
Chromosome8 (Build37)4 (Build37)
Map Location 79,422,695 - 79,423,53633,366,560 - 33,366,630
singlet/doubletsingletsinglet
Overlap geneLOC100039211
Upstream gene1700007B14Rik, LOC100039185, EG631594, LOC666226, LOC384847
Downstream geneNr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017H04.bB6Ng01-017H04.g
ACCDH851132DH851133
length84357
definitionDH851132|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H04, 5' end.DH851133|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,422,695 - 79,423,536)(33,366,560 - 33,366,630)
sequence
gaattcccggatttatttaactcatttctaaaaaagcaagcaagcaggtg
cgtgtactcctagtgacaccagttttccccgccccgcagacttccaacta
ggggcgtgtgtaacggtgcattggaagagtcttgagcagagaatatctcg
cacacccgcgagtgaaaacgggcgcgcgcacatacattcactggactggg
gtgacctgagtgccttggggtgagaggctaggatttggcaagggctagag
agtgagaaggacgtgggggacaagtgaaccccaggatcgcagctcaggct
cagtcctcctcccaccgccgcgtgcccgcgcgccgcgccgcccggccagg
gagcccgcctttcactttcgcatctgcgtaggtgtctgcccgggcgggcg
cgagggcgcgggggcgcgcggggaggcgcggaggcgcgcgacgggggagg
gttgcagccgttctcccctttctgggcccgcagcgctccgggcggccgct
atggaagcgcggggtcgctagcggtcgcttcccacgcgccctggtgcgca
gacaccccggcccgcctggtgcccccccccccacggtgggggtagggcag
cgacccaagagctgtctcactgggtgggcagtggaggagcaggaaagaaa
cttttccctcctggcccgctcttggttttccagccctccactccctatcc
ggtggcacctgcacctgaggccagacgccaggtcagggctgacttttggg
ggccggcgaagagaagagggtgcgtgcactggggttccgttttccctcgg
ccttcttgctgtcagtggctggggttccgacgacagccaccag
caggacagacaaaggctacacagagaaaccctatctaaagaaaggaagga
aggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_79422695_79423536
seq2: B6Ng01-017H04.b_47_889

seq1  GAATTCCCGGATTTATTTAACTCATTTCTAAAAAAGCAAGCAAGCAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGGATTTATTTAACTCATTTCTAAAAAAGCAAGCAAGCAGGTG  50

seq1  CGTGTACTCCTAGTGACACCAGTTTTCCCCGCCCCGCAGACTTCCAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTACTCCTAGTGACACCAGTTTTCCCCGCCCCGCAGACTTCCAACTA  100

seq1  GGGGCGTGTGTAACGGTGCATTGGAAGAGTCTTGAGCAGAGAATATCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTGTGTAACGGTGCATTGGAAGAGTCTTGAGCAGAGAATATCTCG  150

seq1  CACACCCGCGAGTGAAAACGGGCGCGCGCACATACATTCACTGGACTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCGCGAGTGAAAACGGGCGCGCGCACATACATTCACTGGACTGGG  200

seq1  GTGACCTGAGTGCCTTGGGGTGAGAGGCTAGGATTTGGCAAGGGCTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTGAGTGCCTTGGGGTGAGAGGCTAGGATTTGGCAAGGGCTAGAG  250

seq1  AGTGAGAAGGACGTGGGGGACAAGTGAACCCCAGGATCGCAGCTCAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAAGGACGTGGGGGACAAGTGAACCCCAGGATCGCAGCTCAGGCT  300

seq1  CAGTCCTCCTCCCACCGCCGCGTGCCCGCGCGCCGCGCCGCCCGGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCCTCCCACCGCCGCGTGCCCGCGCGCCGCGCCGCCCGGCCAGG  350

seq1  GAGCCCGCCTTTCACTTTCGCATCTGCGTAGGTGTCTGCCCGGGCGGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCGCCTTTCACTTTCGCATCTGCGTAGGTGTCTGCCCGGGCGGGCG  400

seq1  CAAGGGCGCGGGGGCGCGCGGGGAGGCGCGGAGGCGCGCGACGGGGGAGG  450
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGGCGCGGGGGCGCGCGGGGAGGCGCGGAGGCGCGCGACGGGGGAGG  450

seq1  GTTGCAGCCGTTCTCCCCTTTCTGGGCCCGCAGCGCTCCGGGCGGCCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGCCGTTCTCCCCTTTCTGGGCCCGCAGCGCTCCGGGCGGCCGCT  500

seq1  ATGGAAGCGCGGGGTCGCTAGCGGTCGCTTCCCACGCGCCCTGGTGCGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCGCGGGGTCGCTAGCGGTCGCTTCCCACGCGCCCTGGTGCGCA  550

seq1  GACACCCCGGCCCGCCTGGTGCCCCCCCCCCCACGGTGGGGGTAGGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCCGGCCCGCCTGGTGCCCCCCCCCCCACGGTGGGGGTAGGGCAG  600

seq1  CGACCCAAGAGCTGTCTCACTGGGTGGGCAGTGGAGGAGCAGGAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCCAAGAGCTGTCTCACTGGGTGGGCAGTGGAGGAGCAGGAAAGAAA  650

seq1  CTTTTCCCTCCTGGCCCGCTCTTGGTTTTCCAGCCCTCCACTCCCTATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCTCCTGGCCCGCTCTTGGTTTTCCAGCCCTCCACTCCCTATCC  700

seq1  GGTGGCACCTGCACCTGAGGCCAGACGCCAGGTCAGGGCTGAC-TTTGGG  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTGGCACCTGCACCTGAGGCCAGACGCCAGGTCAGGGCTGACTTTTGGG  750

seq1  GGCCGGCGAAGAGAAGAGGGTGCGTGCACTGGGGTTCCGTTTTCCCTCGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGCGAAGAGAAGAGGGTGCGTGCACTGGGGTTCCGTTTTCCCTCGG  800

seq1  CCTTCTTGCTGTCAGTGGCTGGGGTTCCGACGACAGCCACCAG  842
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTGCTGTCAGTGGCTGGGGTTCCGACGACAGCCACCAG  843

seq1: chr4_33366560_33366630
seq2: B6Ng01-017H04.g_72_128 (reverse)

seq1  TCTTCCCTTCCTTCCTTTCTTTCTTTCGGTTTTTCGAGACAGGGTTTCTC  50
      |||| |||||||||||||||||              ||| ||||||||||
seq2  TCTT-CCTTCCTTCCTTTCTTT--------------AGATAGGGTTTCTC  35

seq1  TGTGTAGCC-CTGGCTGTCCTG  71
      |||||||||  || ||||||||
seq2  TGTGTAGCCTTTGTCTGTCCTG  57