BAC Information

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BAC

Clone NameB6Ng01-017O06
Chromosome3 (Build37)8 (Build37)
Map Location 139,723,185 - 139,723,8644,564,446 - 4,564,506
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRap1gds1, EG229879, B930007M17Rik, LOC100039840
Downstream geneLOC229883, LOC621343, 4930590L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017O06.bB6Ng01-017O06.g
ACCDH851439DH851440
length680184
definitionDH851439|Mus musculus domesticus DNA, BAC clone: B6Ng01-017O06, 5' end.DH851440|Mus musculus domesticus DNA, BAC clone: B6Ng01-017O06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(139,723,185 - 139,723,864)(4,564,446 - 4,564,506)
sequence
gaattcaataatagcagtaataataagtgtgtttctgggctgaagttagc
aatcacaaaaactataaatgacctgttatcttgcatctttaaatcagaaa
ataaatgcttgaataacaaagatataaaataattattttctatcatttta
gatggtgaaatttgtttttagcttttaaaaaggcaagacttggatattaa
gaattatatagtatttatcctgtctttctttcaagataaagtatccaatt
ataccttttgaataattcaaattctttctcatcactgagaacacatttta
aatttatggcacagaaggatttcaatcatctttggcattcatgtctcaag
gcatttcccatatttattcagaagagtttgacaaaatgtacacaacagac
tgcaatttaaagcctctactttttgcaacatatatttgcagtaaaagttc
caagggtttgtacaaattagaatgcattatgggtatacatgttttgaaca
cctatttgataagaaatttatcacttactagccttttataaacattttct
tagaatagcacttggctgagtccaaatgacaaatgcctcattttctgtcc
taatagtagacatgaggcgctctctctctctctctcttgctctctctctc
tctctctctctctctctctctctctctctc
cagaagattaagacagggagatctctgagtacaagaccttctgggattaa
aggtgtggtggtacacacctttaatctggaccacaccttctgctggagac
ctacataaggacattgaaagaaggaagattcattctctctctctctctct
ctctctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_139723185_139723864
seq2: B6Ng01-017O06.b_44_723

seq1  GAATTCAATAATAGCAGTAATAATAAGTGTGTTTCTGGGCTGAAGTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATAGCAGTAATAATAAGTGTGTTTCTGGGCTGAAGTTAGC  50

seq1  AATCACAAAAACTATAAATGACCTGTTATCTTGCATCTTTAAATCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAAAAACTATAAATGACCTGTTATCTTGCATCTTTAAATCAGAAA  100

seq1  ATAAATGCTTGAATAACAAAGATATAAAATAATTATTTTCTATCATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCTTGAATAACAAAGATATAAAATAATTATTTTCTATCATTTTA  150

seq1  GATGGTGAAATTTGTTTTTAGCTTTTAAAAAGGCAAGACTTGGATATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGAAATTTGTTTTTAGCTTTTAAAAAGGCAAGACTTGGATATTAA  200

seq1  GAATTATATAGTATTTATCCTGTCTTTCTTTCAAGATAAAGTATCCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATATAGTATTTATCCTGTCTTTCTTTCAAGATAAAGTATCCAATT  250

seq1  ATACCTTTTGAATAATTCAAATTCTTTCTCATCACTGAGAACACATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTTGAATAATTCAAATTCTTTCTCATCACTGAGAACACATTTTA  300

seq1  AATTTATGGCACAGAAGGATTTCAATCATCTTTGGCATTCATGTCTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATGGCACAGAAGGATTTCAATCATCTTTGGCATTCATGTCTCAAG  350

seq1  GCATTTCCCATATTTATTCAGAAGAGTTTGACAAAATGTACACAACAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCCATATTTATTCAGAAGAGTTTGACAAAATGTACACAACAGAC  400

seq1  TGCAATTTAAAGCCTCTACTTTTTGCAACATATATTTGCAGTAAAAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTAAAGCCTCTACTTTTTGCAACATATATTTGCAGTAAAAGTTC  450

seq1  CAAGGGTTTGTACAAATTAGAATGCATTATGGGTATACATGTTTTGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTTTGTACAAATTAGAATGCATTATGGGTATACATGTTTTGAACA  500

seq1  CCTATTTGATAAGAAATTTATCACTTACTAGCCTTTTATAAACATTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTGATAAGAAATTTATCACTTACTAGCCTTTTATAAACATTTTCT  550

seq1  TAGAATAGCACTTGGCTGAGTCCAAATGACAAATGCCTCATTTTCTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGCACTTGGCTGAGTCCAAATGACAAATGCCTCATTTTCTGTCC  600

seq1  TAATAGTAGACATGAGGCGCTCTCTCTCTCTCTCTCTTGCTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTAGACATGAGGCGCTCTCTCTCTCTCTCTCTTGCTCTCTCTCTC  650

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  680
      ||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  680

seq1: chr8_4564446_4564506
seq2: B6Ng01-017O06.g_199_258 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AATGATATCTT  61
      ||||| |||||
seq2  AATGA-ATCTT  60