BAC Information

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BAC

Clone NameB6Ng01-018H08
Chromosome8 (Build37)
Map Location 85,678,522 - 85,849,065
singlet/doubletdoublet
Overlap geneLOC100039688, Tbc1d9, Ucp1, Elmod2
Upstream geneLOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330, Rnf150
Downstream gene4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018H08.bB6Ng01-018H08.g
ACCDH851856DH851857
length4541,071
definitionDH851856|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H08, 5' end.DH851857|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,678,522 - 85,678,981)(85,847,991 - 85,849,065)
sequence
tttcttttggcttgtctgtatttttgaactttgagagttaacatgatctg
cttatgtgaattaaaattaaatattaacataaatgaaaatatcaactaga
agtgcatacattgtaaaatagatgcacacacacaccccaaaaccaaaaaa
caacaaaaacttgtgtgttttatatttaataataataataaataaatgaa
gcagtttctaggaatgtgcagccctatctgacccagccatctccatcttg
aactatgagatctattgggacatctgaggaagattttctcatttccttag
gcaagcttcttcgtagaaacttcatgtgaaaatccaagtgccacagtttg
tggagatgcttcaggcagtgggtatttattttcaggctttgtatgtgact
tcctcttcagtgttttctagatggatttttaaaaaaggatggggggtggg
gggg
gaattctgcgagaaagccaagattcccagtcttaggaaaggtagaacata
aggccccagagcctgggtcacaggttctgtgagcagcttcatcctgggaa
accctgtagtttctgtgaagtgggaaaagtttgtggaaagcagtttgtca
actaatatgaaaataaaagaatctaggttgccatatattcaagaaaagaa
ataaaatctccaatttaaaatattgtaaaactctgtagcattggcctatt
tagttctcttttaatagatgtttgggcccttgtgcttttgagtgtttgcc
tgtatgcactgtgtctgtgctgtgtacatacctgctgcccacagaggtaa
gaagagggcatcagattctctggagctggattgtcaggtggttgtgagcc
atcaggtaggtcctggaaaccaaacccagtcctctgcagaagtagtgttc
tttgccattgagcctctctctagccttgcttaattcttaccaaacattta
tggaagaagaaacagtgccactgttaacagaaagtcctgggaaatggagg
gaagacccccccccttttgagtgcacactaaaaccaaagacctataaata
aaaaatacaactcggtgtcctttatgaacgtgatgcaagagttcttacag
aacatgagctgagtgatcatagaaacacataaaaggacactgttaggatt
aaagtttaagttcagggacttcatctattaccacggtaacagagtcgaca
ggtactgaaaaatcggctcatgattaaaatctatcccacaatccattaaa
ggtcgccagcggacaatctagctgacatcacagaagacattaaactttga
aggtttagtcacttgtagttggaagcatgacagatatgataatttctctg
cttctattcagcattttactgaaatcttggggaccacagtcagcaaggaa
aaacaaacaaaaacaaatctgagacatagttgggcagaaagagttacatg
tattaaagaaatgtagtctggaggatgttgacggtgcttggtccctgagg
ccactgcatatgtattataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_85678522_85678981
seq2: B6Ng01-018H08.b_45_504

seq1  GAATTCTTTCTTTTGGCTTGTCTGTATTTTTGAACTTTGAGAGTTAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTTGGCTTGTCTGTATTTTTGAACTTTGAGAGTTAACAT  50

seq1  GATCTGCTTATGTGAATTAAAATTAAATATTAACATAAATGAAAATATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTTATGTGAATTAAAATTAAATATTAACATAAATGAAAATATCA  100

seq1  ACTAGAAGTGCATACATTGTAAAATAGATGCACACACACACCCCAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGTGCATACATTGTAAAATAGATGCACACACACACCCCAAAACC  150

seq1  AAAAAACAACAAAAACTTGTGTGTTTTATATTTAATAATAATAATAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAACAAAAACTTGTGTGTTTTATATTTAATAATAATAATAAATA  200

seq1  AATGAAGCAGTTTCTAGGAATGTGCAGCCCTATCTGACCCAGCCATCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCAGTTTCTAGGAATGTGCAGCCCTATCTGACCCAGCCATCTCC  250

seq1  ATCTTGAACTATGAGATCTATTGGGACATCTGAGGAAGATTTTCTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAACTATGAGATCTATTGGGACATCTGAGGAAGATTTTCTCATTT  300

seq1  CCTTAGGCAAGCTTCTTCGTAGAAACTTCATGTGAAAATCCAAGTGCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGCAAGCTTCTTCGTAGAAACTTCATGTGAAAATCCAAGTGCCAC  350

seq1  AGTTTGTGGAGATGCTTCAGGCAGTGGGTATTTATTTTCAGGCTTTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGGAGATGCTTCAGGCAGTGGGTATTTATTTTCAGGCTTTGTAT  400

seq1  GTGACTTCCTCTTCAGTGTTTTCTAGATGGATTTTTAAAAAAGGATGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTCCTCTTCAGTGTTTTCTAGATGGATTTTTAAAAAAGGATGGGG  450

seq1  GGTGGGGGGG  460
      ||||||||||
seq2  GGTGGGGGGG  460

seq1: chr8_85847991_85849065
seq2: B6Ng01-018H08.g_66_1136 (reverse)

seq1  CTTATTAATACATA-GCAGTGGCCTCCAGGGACCCAGCACTGTCTACATC  49
      |||| ||||||||| |||||||||| |||||||| ||||| ||| |||||
seq2  CTTA-TAATACATATGCAGTGGCCT-CAGGGACCAAGCACCGTCAACATC  48

seq1  CT-CAGACTACATCTCTGTTAATACATGTAGCTCTTTCTGGCCAACTATG  98
      || |||||||||| ||| |||||||||||| ||||||||| |||||||||
seq2  CTCCAGACTACATTTCT-TTAATACATGTAACTCTTTCTGCCCAACTATG  97

seq1  TCTCAGGTTTTGTTTTTGTTTTGTTTTTCCTTGCTGACTGTGGTCCCCAA  148
      ||||| | |||||||||| |||||||||||||||||||||||||||||||
seq2  TCTCA-GATTTGTTTTTG-TTTGTTTTTCCTTGCTGACTGTGGTCCCCAA  145

seq1  GATTTCAGTAAAATGCTGAATAGAAGCAGAGAAACTAATCATATCTGTCA  198
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  GATTTCAGTAAAATGCTGAATAGAAGCAGAGAAA-TTATCATATCTGTCA  194

seq1  TGCTTCCAACTACAAGTGACTAAACCTTCAAAGTTTAATGTCTTCTGTGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCAACTACAAGTGACTAAACCTTCAAAGTTTAATGTCTTCTGTGA  244

seq1  TGTCAGCTAGATTGTCCGCTGGCGACCTTTAATGGATTGTGGGATAGATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCTAGATTGTCCGCTGGCGACCTTTAATGGATTGTGGGATAGATT  294

seq1  TTAATCATGAGCCGATTTTTCAGTACCTGTCGACTCTGTTACCGTGGTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATGAGCCGATTTTTCAGTACCTGTCGACTCTGTTACCGTGGTAA  344

seq1  TAGATGAAGTCCCTGAACTTAAACTTTAATCCTAACAGTGTCCTTTTATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAAGTCCCTGAACTTAAACTTTAATCCTAACAGTGTCCTTTTATG  394

seq1  TGTTTCTATGATCACTCAGCTCATGTTCTGTAAGAACTCTTGCATCACGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTATGATCACTCAGCTCATGTTCTGTAAGAACTCTTGCATCACGT  444

seq1  TCATAAAGGACACCGAGTTGTATTTTTTATTTATAGGTCTTTGGTTTTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGGACACCGAGTTGTATTTTTTATTTATAGGTCTTTGGTTTTAG  494

seq1  TGTGCACTCAAAAGGGGGGGGGTCTTCCCTCCATTTCCCAGGACTTTCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTCAAAAGGGGGGGGGTCTTCCCTCCATTTCCCAGGACTTTCTG  544

seq1  TTAACAGTGGCACTGTTTCTTCTTCCATAAATGTTTGGTAAGAATTAAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTGGCACTGTTTCTTCTTCCATAAATGTTTGGTAAGAATTAAGC  594

seq1  AAGGCTAGAGAGAGGCTCAATGGCAAAGAACACTACTTCTGCAGAGGACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAGAGAGAGGCTCAATGGCAAAGAACACTACTTCTGCAGAGGACT  644

seq1  GGGTTTGGTTTCCAGGACCTACCTGATGGCTCACAACCACCTGACAATCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGTTTCCAGGACCTACCTGATGGCTCACAACCACCTGACAATCC  694

seq1  AGCTCCAGAGAATCTGATGCCCTCTTCTTACCTCTGTGGGCAGCAGGTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGAGAATCTGATGCCCTCTTCTTACCTCTGTGGGCAGCAGGTAT  744

seq1  GTACACAGCACAGACACAGTGCATACAGGCAAACACTCAAAAGCACAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGCACAGACACAGTGCATACAGGCAAACACTCAAAAGCACAAGG  794

seq1  GCCCAAACATCTATTAAAAGAGAACTAAATAGGCCAATGCTACAGAGTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAACATCTATTAAAAGAGAACTAAATAGGCCAATGCTACAGAGTTT  844

seq1  TACAATATTTTAAATTGGAGATTTTATTTCTTTTCTTGAATATATGGCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATTTTAAATTGGAGATTTTATTTCTTTTCTTGAATATATGGCAA  894

seq1  CCTAGATTCTTTTATTTTCATATTAGTTGACAAACTGCTTTCCACAAACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATTCTTTTATTTTCATATTAGTTGACAAACTGCTTTCCACAAACT  944

seq1  TTTCCCACTTCACAGAAACTACAGGGTTTCCCAGGATGAAGCTGCTCACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACTTCACAGAAACTACAGGGTTTCCCAGGATGAAGCTGCTCACA  994

seq1  GAACCTGTGACCCAGGCTCTGGGGCCTTATGTTCTACCTTTCCTAAGACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTGACCCAGGCTCTGGGGCCTTATGTTCTACCTTTCCTAAGACT  1044

seq1  GGGAATCTTGGCTTTCTCGCAGAATTC  1075
      |||||||||||||||||||||||||||
seq2  GGGAATCTTGGCTTTCTCGCAGAATTC  1071