BAC Information

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BAC

Clone NameB6Ng01-019B21
Chromosome8 (Build37)
Map Location 104,027,014 - 104,175,040
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042086, LOC100042092, LOC384895
Downstream geneCdh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019B21.bB6Ng01-019B21.g
ACCDH852304DH852305
length1,1781,056
definitionDH852304|Mus musculus domesticus DNA, BAC clone: B6Ng01-019B21, 5' end.DH852305|Mus musculus domesticus DNA, BAC clone: B6Ng01-019B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,173,865 - 104,175,040)(104,027,014 - 104,028,079)
sequence
gaattcatcagcatggtgggttggaggcatgttgatctttcaggtctagt
aaacacttcattgtttgcactggcatttgcagagaacccaacaaagcaga
tccttaccaaatgtctcctctataatgacctctggtgttaccagatccag
acttctctcctcctgcctgcatctcaaatggggagcagagagagcctgag
ttagccattttcacaaactgggaagacctaaattcaactcagctgtcctt
gcagtctggcaatcacccatgtctaaatgtgtctttcctatatttggtgc
taatcctcctgaaatcactttggacgggaggacaaactgccaacaacaga
atcaagccagtttttttttccccaagacaacacctgcccatttaaaaaaa
aaatgctttcctttaatgagaacatcctgtgtgctctacagctgtcctca
ctgtctttacctggcatttcccagaaaatgtttgttttagattttttgct
gtttctgtgttgtttaagggacacatgcacagtctctccccacctccacc
ccataagttgtgttaaagtacaacttctaagaacttgcaattttgggctt
gttagctggttggttttgtgcctcctgtgctagcttcacttgtaaggaaa
gagacgtgaaaagaaggacttggaccttcagaacctacattaagcattac
tttctgcccttgaccactatgtgaacttgaagaagcaatgtgtgattctt
tgcctcaatttgtcccactgaagtagcatgaatggactatggtctttgat
ctaaagaaaaacaggacagactaatttttttttcctgctcttcctgggtt
gtgctcattggaaaatctgggggagaaaacaacaacgacgacgacgacga
cgacgacgacgacgacgacgacgaaacaccaccaccaccaccaccaatac
aactaaaaaaaaaatactcccaaacacaaacaaacaaacaaacaaatccc
aaacctcaggaaacatagtaggagaagaaaaaagctttaagatcttatgt
aggaaagaaagaacaagcatctcaaacaggaaccaaacataataaaatta
ttgcctccaattgggaggctatttacaagtaactaagactctcacctgcc
aaacttaacaaggggtgatatatctgct
gaattcaagacaaacgcatacctcttaacaccaaaaattgttgctggaca
gacttttatagtggttttgccagcactggaatgcaaatcacatctttcac
tttgtatgacgcagagaacagtatctggcaactttagagagtgagtaact
ctaagggcttaagtacagggactcactattcatcagggaaacagaactta
atttgttatacctccagagctccagtagccctgggagggaggctgttgtg
gaaaggagtaagactagatacaacactgataagttttcttcctgaatctt
agacaagacagtgatgtgcatactactgtcaggggaccctgcccctctga
gtgtccatgtgtagattttttttcaactgagaataacatctacaatgttt
gttttctcatttttctattataacgtccctgataggctttaatgattttt
aatcatatttctaaatttttgcattttgcatgatttgttttctactgatc
ttgtttttttttttttccttccctctcatttgtgttataggcattgagcc
cttataaaacagattgcatttctaacttaattcactttctcacagtattt
attttatttggaaaatttcttaatatctggaactttatcttttagttttt
acttttttataatactttgctttgttatactttcttagtagcatgctttc
tcattcctttgtttttattttgtttcagttctttatttttctcatttaac
tttatttaattttatgtgtaatcatctacctttcttcattcatttattaa
ctatttccatatttacttgagttttaacttcatagcatattctacttgag
ttttcccattttctgttacaaacaactttggtagttatttgtatgcttta
aaaatgttcaacatatttctacaaatccatggttcattttgttgtcctta
atcattgttttccctcatcaaagcatagggtgactggctcctaaaaagag
cttgatcactaaaactttttctcaaagaaatcttgtagaagtatcagtca
gaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_104173865_104175040
seq2: B6Ng01-019B21.b_46_1223 (reverse)

seq1  AGCAGATA-ATCACCC--TGTTAGGTTTGGCAGGT--GAGTCTAGGTTAC  45
      |||||||| |||||||  ||||| |||||||||||  ||||||  |||||
seq2  AGCAGATATATCACCCCTTGTTAAGTTTGGCAGGTGAGAGTCTTAGTTAC  50

seq1  TTGTAAAATAGGCCTCCAATGGGAG--CATAATTTTAATTAATGTTTGTG  93
      |||| |||||| |  ||||| ||||   |||||||||  | ||||||| |
seq2  TTGT-AAATAGCCTCCCAATTGGAGGCAATAATTTTA--TTATGTTTG-G  96

seq1  TTCCTGTTTTGAGATGCTTGGTCTTTC-TTCCTACATAAGGGTCTTAAAG  142
      |||||| ||||||||||||| |||||| ||||||||||| | ||||||||
seq2  TTCCTG-TTTGAGATGCTTGTTCTTTCTTTCCTACATAA-GATCTTAAAG  144

seq1  CTTTTTTCTTCCTCCTACTATGTTTCCTGAGGTTTGGGGTTTTGTTTGTT  192
      |||||||||| |||||||||||||||||||||||| ||| ||||||||||
seq2  CTTTTTTCTT-CTCCTACTATGTTTCCTGAGGTTT-GGGATTTGTTTGTT  192

seq1  TGTTTGTTTGTTGTTTGGGAGTATTTTTTTTTTAGTTGTATTGGTGGTGG  242
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTG-TGTTTGGGAGTATTTTTTTTTTAGTTGTATTGGTGGTGG  241

seq1  TGGTGGTGGTGTTTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGGTGTTTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGT  291

seq1  CGTTGTTGTTTTCT-CCCCAGATTTTCCAATGAGCACAA-CCAGGAAGAG  340
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  CGTTGTTGTTTTCTCCCCCAGATTTTCCAATGAGCACAACCCAGGAAGAG  341

seq1  CAGG-AAAAAAAATTAGTCTGTCCTGTTTTTCTTTAGATCAAAGACCATA  389
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAAAAAATTAGTCTGTCCTGTTTTTCTTTAGATCAAAGACCATA  391

seq1  GTCCATTCATGCTACTTCAGTGGGACAAATTGAGGCAAAGAATCACACAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTCATGCTACTTCAGTGGGACAAATTGAGGCAAAGAATCACACAT  441

seq1  TGCTTCTTCAAGTTCACATAGTGGTCAAGGGCAGAAAGTAATGCTTAATG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTCAAGTTCACATAGTGGTCAAGGGCAGAAAGTAATGCTTAATG  491

seq1  TAGGTTCTGAAGGTCCAAGTCCTTCTTTTCACGTCTCTTTCCTTACAAGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTGAAGGTCCAAGTCCTTCTTTTCACGTCTCTTTCCTTACAAGT  541

seq1  GAAGCTAGCACAGGAGGCACAAAACCAACCAGCTAACAAGCCCAAAATTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGCACAGGAGGCACAAAACCAACCAGCTAACAAGCCCAAAATTG  591

seq1  CAAGTTCTTAGAAGTTGTACTTTAACACAACTTATGGGGTGGAGGTGGGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTTAGAAGTTGTACTTTAACACAACTTATGGGGTGGAGGTGGGG  641

seq1  AGAGACTGTGCATGTGTCCCTTAAACAACACAGAAACAGCAAAAAATCTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGTGCATGTGTCCCTTAAACAACACAGAAACAGCAAAAAATCTA  691

seq1  AAACAAACATTTTCTGGGAAATGCCAGGTAAAGACAGTGAGGACAGCTGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACATTTTCTGGGAAATGCCAGGTAAAGACAGTGAGGACAGCTGT  741

seq1  AGAGCACACAGGATGTTCTCATTAAAGGAAAGCATTTTTTTTTTAAATGG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACACAGGATGTTCTCATTAAAGGAAAGCATTTTTTTTTTAAATGG  791

seq1  GCAGGTGTTGTCTTGGGGAAAAAAAAACTGGCTTGATTCTGTTGTTGGCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGTTGTCTTGGGGAAAAAAAAACTGGCTTGATTCTGTTGTTGGCA  841

seq1  GTTTGTCCTCCCGTCCAAAGTGATTTCAGGAGGATTAGCACCAAATATAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCCTCCCGTCCAAAGTGATTTCAGGAGGATTAGCACCAAATATAG  891

seq1  GAAAGACACATTTAGACATGGGTGATTGCCAGACTGCAAGGACAGCTGAG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACACATTTAGACATGGGTGATTGCCAGACTGCAAGGACAGCTGAG  941

seq1  TTGAATTTAGGTCTTCCCAGTTTGTGAAAATGGCTAACTCAGGCTCTCTC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTAGGTCTTCCCAGTTTGTGAAAATGGCTAACTCAGGCTCTCTC  991

seq1  TGCTCCCCATTTGAGATGCAGGCAGGAGGAGAGAAGTCTGGATCTGGTAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCATTTGAGATGCAGGCAGGAGGAGAGAAGTCTGGATCTGGTAA  1041

seq1  CACCAGAGGTCATTATAGAGGAGACATTTGGTAAGGATCTGCTTTGTTGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGGTCATTATAGAGGAGACATTTGGTAAGGATCTGCTTTGTTGG  1091

seq1  GTTCTCTGCAAATGCCAGTGCAAACAATGAAGTGTTTACTAGACCTGAAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGCAAATGCCAGTGCAAACAATGAAGTGTTTACTAGACCTGAAA  1141

seq1  GATCAACATGCCTCCAACCCACCATGCTGATGAATTC  1176
      |||||||||||||||||||||||||||||||||||||
seq2  GATCAACATGCCTCCAACCCACCATGCTGATGAATTC  1178

seq1: chr8_104027014_104028079
seq2: B6Ng01-019B21.g_68_1123

seq1  GAATTCAAGACAAACGCATACCTCTTAACACCAAAAATTGTTGCTGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACAAACGCATACCTCTTAACACCAAAAATTGTTGCTGGACA  50

seq1  GACTTTTATAGTGGTTTTGCCAGCACTGGAATGCAAATCACATCTTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTATAGTGGTTTTGCCAGCACTGGAATGCAAATCACATCTTTCAC  100

seq1  TTTGTATGACGCAGAGAACAGTATCTGGCAACTTTAGAGAGTGAGTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGACGCAGAGAACAGTATCTGGCAACTTTAGAGAGTGAGTAACT  150

seq1  CTAAGGGCTTAAGTACAGGGACTCACTATTCATCAGGGAAACAGAACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGCTTAAGTACAGGGACTCACTATTCATCAGGGAAACAGAACTTA  200

seq1  ATTTGTTATACCTCCAGAGCTCCAGTAGCCCTGGGAGGGAGGCTGTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTATACCTCCAGAGCTCCAGTAGCCCTGGGAGGGAGGCTGTTGTG  250

seq1  GAAAGGAGTAAGACTAGATACAACACTGATAAGTTTTCTTCCTGAATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGTAAGACTAGATACAACACTGATAAGTTTTCTTCCTGAATCTT  300

seq1  AGACAAGACAGTGATGTGCATACTACTGTCAGGGGACCCTGCCCCTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGACAGTGATGTGCATACTACTGTCAGGGGACCCTGCCCCTCTGA  350

seq1  GTGTCCATGTGTAGATTTTTTTTCAACTGAGAATAACATCTACAATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATGTGTAGATTTTTTTTCAACTGAGAATAACATCTACAATGTTT  400

seq1  GTTTTCTCATTTTTCTATTATAACGTCCCTGATAGGCTTTAATGATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCATTTTTCTATTATAACGTCCCTGATAGGCTTTAATGATTTTT  450

seq1  AATCATATTTCTAAATTTTTGCATTTTGCATGATTTGTTTTCTACTGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATTTCTAAATTTTTGCATTTTGCATGATTTGTTTTCTACTGATC  500

seq1  TTGTTTTTTTTTTTTTCCTTCCCTCTCATTTGTGTTATAGGCATTGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTTTTTTTCCTTCCCTCTCATTTGTGTTATAGGCATTGAGCC  550

seq1  CTTATAAAACAGATTGCATTTCTAACTTAATTCACTTTCTCACAGTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAAACAGATTGCATTTCTAACTTAATTCACTTTCTCACAGTATTT  600

seq1  ATTTTA-TTGGAAAATTTCTTAATATCTGGAACTTTATCTTTTAGTTTTT  649
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTGGAAAATTTCTTAATATCTGGAACTTTATCTTTTAGTTTTT  650

seq1  ACTTTTTTATAATACTTTGCTTTGTTATACTTTCTTAGTAGCATGCTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTATAATACTTTGCTTTGTTATACTTTCTTAGTAGCATGCTTTC  700

seq1  TCATTCCTTTGTTTTTATTTTGTTTCAGTTCTTTATTTTTCTCATTTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTTTGTTTTTATTTTGTTTCAGTTCTTTATTTTTCTCATTTAAC  750

seq1  TTTATTTAATTTTATGTGTAATCATCTACCTTTCTTCATTTCATTTATTA  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTATTTAATTTTATGTGTAATCATCTACCTTTCTTCA-TTCATTTATTA  799

seq1  ACTATTTCCATATTTACTTTGAGTTTTAACTTCATAGCATATTCTACTTG  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTATTTCCATATTTAC-TTGAGTTTTAACTTCATAGCATATTCTACTTG  848

seq1  AGTTTTCCCATTTTCTGTTAC-AACAACTTTGGTAGTTTATTTGTATGCT  898
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  AGTTTTCCCATTTTCTGTTACAAACAACTTTGGTAG-TTATTTGTATGCT  897

seq1  TTAATAAATGTTCAACATATTTCTACAAATTCCATGGTTTCATTTTGTTG  948
      |||| |||||||||||||||||||||||| ||||||| ||||||||||||
seq2  TTAA-AAATGTTCAACATATTTCTACAAA-TCCATGG-TTCATTTTGTTG  944

seq1  TCCTTATTCATTTGTTTTTCCCTCATCCATAGCATTGGGTGACTGGGCTC  998
      |||||| |||||   ||||||||||| || ||||| |||||||| |||||
seq2  TCCTTAATCATT--GTTTTCCCTCAT-CAAAGCATAGGGTGACT-GGCTC  990

seq1  CTAAAAAGAGCTTGATCACTAAGACTTTTTCCCAAAGAAATCTCTTAGAA  1048
      |||||||||||||||||||||| |||||||| |||||||||||  |||||
seq2  CTAAAAAGAGCTTGATCACTAAAACTTTTTCTCAAAGAAATCTTGTAGAA  1040

seq1  GTACCAAACCCAGAAATG  1066
      ||| |  |  ||||||||
seq2  GTATC--AGTCAGAAATG  1056