BAC Information

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BAC

Clone NameB6Ng01-019C16
Chromosome8 (Build37)
Map Location 35,543,487 - 35,683,147
singlet/doubletdoublet
Overlap geneLOC666746
Upstream geneLOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
Downstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019C16.bB6Ng01-019C16.g
ACCDH852339DH852340
length1,013844
definitionDH852339|Mus musculus domesticus DNA, BAC clone: B6Ng01-019C16, 5' end.DH852340|Mus musculus domesticus DNA, BAC clone: B6Ng01-019C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,682,127 - 35,683,147)(35,543,487 - 35,544,335)
sequence
gaattcagaaatctgcctgcctctgcctcctaagtgctgggattaaagga
gtgtgccatcagtacccggcgagtggttttaaaatatattttctaaggag
gtgtgtagagccaaagtttctatggaaaaaaaactctttgggggtcctga
actaactgacattcatcctaagagaagtactcagagagctagtgtttgta
aggtgggcctttttgtttgtatttcagtttctctgccttgcgggactcct
gtcatcgcatccagaaaagagcagtgaggcgcttcctgggagccgaatat
tgtggctagagaggcagcccttgccttccaggcacttccatccgggagga
agaatgcagatatactggtcatcgtgtattcagttccatacaagggtgag
gatacagctactgtatttgcttgtactgaatcagacctggccttgacagc
ttcttaggggaagatggagttacaccgtattgcaaagggggtaggattct
gacagcaaagcactaaagcactgcaggcaggggttggggggcatatgtat
tcccaaggcagagtggagggaatgtaagactgcaccgcctgcatggggct
gctttattaaagcagaaggtgagcgttcagatctcagcttccaggtaagt
ataaactaggaaggtgacgatctgaggtgttatttataggaacatttggt
cagcgagcatttgagtgcatccccaagactgagaagataaaaatatgtgc
taatgaggatggctgtggtggccgcaaaggcacactgtgtctgtgacagg
agagtccacatggactgggcacgtctaacgatgttcagcagctgtctgac
cctgtgagtgtggaggtaactcatcagaaccacaacacagcaaaggcaga
aggacgtcaacctagtaagagataacgcaaaaaaaaaattaattagttat
ggggatattgaagtaagttaccttttgtagtgtctctcaaaaaaaaaaaa
cccgttaaaatca
gaattcattgtctttcccctaccaacagtatgccctgccttttctccacc
ctcccatcccacctcccctatcttcaatgctgactggatgtccctgtcac
cccaagcctctttgggtcgcttttagcaagcctggaggactgtttgactt
gtgtggatgagaacacaagtcacccaggctgtgtggtgggtgaaatacca
tctgattcagacgttccttcgtgacttcctccccatctgactactgcctc
caaacatagcatagtgggggtggatcccagcctctctcctgttccctggg
aatgctgggatggaggcatggctttacctgcaggtaacacacacagggag
gttgcttgttcctctttaataaggaaaagtgagcctggttgcggagtggg
gatgtccttgaatgtctccaaactgtggggcatttgcccaggaagtaagc
atgccaaggttggtccaatatgtttattgagtgtgtttcgtgtagatttt
cttcaattgtcagtctatagactagatcagcctttaagcaaaaagggggg
tcaggtagagcattgaaggggtggttctgctgtgagctcattattaaata
tctggtgtattagaccctttttcctaagatcctttccaattgctctttaa
agagaactaaacataaataaaactttaggaaggacaataagtcttaacta
aggtgttgcatcatttcatgtgacaaagataaatgttaggaataaatgtt
agcagcaaagggctttccctcactgagggtagaagaaggaaagaatgtct
gaactcagatgggaaagggttctgacttgggtcctgaacaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_35682127_35683147
seq2: B6Ng01-019C16.b_45_1056 (reverse)

seq1  GATTTTAAACTGGTTTTTTTTTTTTTTGAGATGACACTTACAAAACGTAA  50
      |||||| ||| ||  |||||||||||||||| ||||| ||||||| || |
seq2  GATTTT-AACGGG--TTTTTTTTTTTTGAGA-GACAC-TACAAAAGGT-A  44

seq1  ACTTACCTCAATAATCCCCATTAACTAATTAATTTTTTTTTTGCGTTATC  100
      |||||| ||||| ||||||| |||||||||||||||||||||||||||||
seq2  ACTTACTTCAAT-ATCCCCA-TAACTAATTAATTTTTTTTTTGCGTTATC  92

seq1  TCTTACTAGGTTGAACGTCCTTCTGCCTTTGCTGTGTTGTGGTTCTGATG  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTTACTAGGTTG-ACGTCCTTCTGCCTTTGCTGTGTTGTGGTTCTGATG  141

seq1  AGTTACCTCCACACTCACAGGGTCAGACAGCTGCTGAACATCGTTAGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCTCCACACTCACAGGGTCAGACAGCTGCTGAACATCGTTAGACG  191

seq1  TGCCCAGTCCATGTGGACTCTCCTGTCACAGACACAGTGTGCCTTTGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGTCCATGTGGACTCTCCTGTCACAGACACAGTGTGCCTTTGCGG  241

seq1  CCACCACAGCCATCCTCATTAGCACATATTTTTATCTTCTCAGTCTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACAGCCATCCTCATTAGCACATATTTTTATCTTCTCAGTCTTGGG  291

seq1  GATGCACTCAAATGCTCGCTGACCAAATGTTCCTATAAATAACACCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACTCAAATGCTCGCTGACCAAATGTTCCTATAAATAACACCTCAG  341

seq1  ATCGTCACCTTCCTAGTTTATACTTACCTGGAAGCTGAGATCTGAACGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCACCTTCCTAGTTTATACTTACCTGGAAGCTGAGATCTGAACGCT  391

seq1  CACCTTCTGCTTTAATAAAGCAGCCCCATGCAGGCGGTGCAGTCTTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTGCTTTAATAAAGCAGCCCCATGCAGGCGGTGCAGTCTTACAT  441

seq1  TCCCTCCACTCTGCCTTGGGAATACATATGCCCCCCAACCCCTGCCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCACTCTGCCTTGGGAATACATATGCCCCCCAACCCCTGCCTGCA  491

seq1  GTGCTTTAGTGCTTTGCTGTCAGAATCCTACCCCCTTTGCAATACGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTAGTGCTTTGCTGTCAGAATCCTACCCCCTTTGCAATACGGTGT  541

seq1  AACTCCATCTTCCCCTAAGAAGCTGTCAAGGCCAGGTCTGATTCAGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATCTTCCCCTAAGAAGCTGTCAAGGCCAGGTCTGATTCAGTACA  591

seq1  AGCAAATACAGTAGCTGTATCCTCACCCTTGTATGGAACTGAATACACGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATACAGTAGCTGTATCCTCACCCTTGTATGGAACTGAATACACGA  641

seq1  TGACCAGTATATCTGCATTCTTCCTCCCGGATGGAAGTGCCTGGAAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGTATATCTGCATTCTTCCTCCCGGATGGAAGTGCCTGGAAGGCA  691

seq1  AGGGCTGCCTCTCTAGCCACAATATTCGGCTCCCAGGAAGCGCCTCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGCCTCTCTAGCCACAATATTCGGCTCCCAGGAAGCGCCTCACTG  741

seq1  CTCTTTTCTGGATGCGATGACAGGAGTCCCGCAAGGCAGAGAAACTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTGGATGCGATGACAGGAGTCCCGCAAGGCAGAGAAACTGAAA  791

seq1  TACAAACAAAAAGGCCCACCTTACAAACACTAGCTCTCTGAGTACTTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACAAAAAGGCCCACCTTACAAACACTAGCTCTCTGAGTACTTCTC  841

seq1  TTAGGATGAATGTCAGTTAGTTCAGGACCCCCAAAGAGTTTTTTTTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATGAATGTCAGTTAGTTCAGGACCCCCAAAGAGTTTTTTTTCCAT  891

seq1  AGAAACTTTGGCTCTACACACCTCCTTAGAAAATATATTTTAAAACCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTTGGCTCTACACACCTCCTTAGAAAATATATTTTAAAACCACT  941

seq1  CGCCGGGTACTGATGGCACACTCCTTTAATCCCAGCACTTAGGAGGCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGGGTACTGATGGCACACTCCTTTAATCCCAGCACTTAGGAGGCAGA  991

seq1  GGCAGGCAGATTTCTGAATTC  1021
      |||||||||||||||||||||
seq2  GGCAGGCAGATTTCTGAATTC  1012

seq1: chr8_35543487_35544335
seq2: B6Ng01-019C16.g_68_911

seq1  GAATTCATTGTCTTTCCCCTACCAACAGTATGCCCTGCCTTTTCTCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTCTTTCCCCTACCAACAGTATGCCCTGCCTTTTCTCCACC  50

seq1  CTCCCATCCCACCTCCCCTATCTTCAATGCTGACTGGATGTCCCTGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCCCACCTCCCCTATCTTCAATGCTGACTGGATGTCCCTGTCAC  100

seq1  CCCAAGCCTCTTTGGGTCGCTTTTAGCAAGCCTGGAGGACTGTTTGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCCTCTTTGGGTCGCTTTTAGCAAGCCTGGAGGACTGTTTGACTT  150

seq1  GTGTGGATGAGAACACAAGTCACCCAGGCTGTGTGGTGGGTGAAATACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGATGAGAACACAAGTCACCCAGGCTGTGTGGTGGGTGAAATACCA  200

seq1  TCTGATTCAGACGTTCCTTCGTGACTTCCTCCCCATCTGACTACTGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCAGACGTTCCTTCGTGACTTCCTCCCCATCTGACTACTGCCTC  250

seq1  CAAACATAGCATAGTGGGGGTGGATCCCAGCCTCTCTCCTGTTCCCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATAGCATAGTGGGGGTGGATCCCAGCCTCTCTCCTGTTCCCTGGG  300

seq1  AATGCTGGGATGGAGGCATGGCTTTACCTGCAGGTAACACACACAGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGGATGGAGGCATGGCTTTACCTGCAGGTAACACACACAGGGAG  350

seq1  GTTGCTTGTTCCTCTTTAATAAGGAAAAGTGAGCCTGGTTGCGGAGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTGTTCCTCTTTAATAAGGAAAAGTGAGCCTGGTTGCGGAGTGGG  400

seq1  GATGTCCTTGAATGTCTCCAAACTGTGGGGCATTTGCCCAGGAAGTAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCTTGAATGTCTCCAAACTGTGGGGCATTTGCCCAGGAAGTAAGC  450

seq1  ATGCCAAGGTTGGTCCAATATGTTTATTGAGTGTGTTTCGTGTAGATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAGGTTGGTCCAATATGTTTATTGAGTGTGTTTCGTGTAGATTTT  500

seq1  CTTCAATTGTCAGTCTATAGACTAGATCAGCCTTTAAGCAAAAAGGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTGTCAGTCTATAGACTAGATCAGCCTTTAAGCAAAAAGGGGGG  550

seq1  TCAGGTAGAGCATTGAAGGGGTGGTTCTGCTGTGAGCTCATTATTAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAGAGCATTGAAGGGGTGGTTCTGCTGTGAGCTCATTATTAAATA  600

seq1  TCTGGTGTATTAGACCC-TTTTCCTAAGATCCTTTCCAATTGCTCTTTAA  649
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTGGTGTATTAGACCCTTTTTCCTAAGATCCTTTCCAATTGCTCTTTAA  650

seq1  AGAGAACTAAAACATAAATAAAACTTTAGGAAGGACAATAAGTCTTAACT  699
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACT-AAACATAAATAAAACTTTAGGAAGGACAATAAGTCTTAACT  699

seq1  AAGGTGTTGCATCATTTCATGTGACAAAGATAAATGTTAGGAATAAATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTTGCATCATTTCATGTGACAAAGATAAATGTTAGGAATAAATGT  749

seq1  TAGCAGCAAAGGGC-TTCCCTCACTGAGGGGTAGGAAGAAGGGAAAGAAT  798
      |||||||||||||| |||||||||||| ||||| |||||| |||||||||
seq2  TAGCAGCAAAGGGCTTTCCCTCACTGA-GGGTA-GAAGAA-GGAAAGAAT  796

seq1  GATCTGAAACTCAGATGGGAAAGGGTTCTGACTTGGGTCCTGGAACAGGT  848
      | |||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  G-TCTG-AACTCAGATGGGAAAGGGTTCTGACTTGGGTCCT-GAACAGGT  843

seq1  A  849
      |
seq2  A  844