BAC Information

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BAC

Clone NameB6Ng01-019J15
Chromosome8 (Build37)
Map Location 111,446,128 - 111,581,841
singlet/doubletdoublet
Overlap geneAtbf1
Upstream genenone
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019J15.bB6Ng01-019J15.g
ACCDH852643DH852644
length1,1231,145
definitionDH852643|Mus musculus domesticus DNA, BAC clone: B6Ng01-019J15, 5' end.DH852644|Mus musculus domesticus DNA, BAC clone: B6Ng01-019J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,580,708 - 111,581,841)(111,446,128 - 111,447,279)
sequence
gaattcaaagagagcgagatccgaaagtcatcgagtggtcagagagacct
aagggtgcagacgaaggatgaagtgaggggaatttatgacgtggtgattt
gggagactctctgcatccactgtgtgtcacagaaagaatattctgctcct
caaacctctgacaagaaggacatctggaaggcagaactcattttatgtca
agctggtacctaagcactgtcggcagagcaggcatagtaataaaaatgat
taagtcacagaacactgcagacaagtatattcatcttcggcaaattataa
ccgagcggtttcactcgtctttccattcataactgctgatgtaggtgacc
cttccttcctcaggcacatgactcatccggagcctgagagcgccctgcca
gcctcactcccctctgcattgtctctcagcttagcttataaagtaattct
taatgttcttttcttttatttacattacttccaagctcgattaattgcta
gaagtgttgcggcttcactcaaatctgcacgccagcactgcagacatggg
cctcgtcagcagagcaggaagaggaataacatttgtgaaatgtggtaact
gagccctaaatgagtaacaactaaaagaaattaactacagagagggattt
ggaatacactgtaacgtattccagtgaccaaagcagaaaccattaacata
agttataagtgcccactatactgattaaatgttaaataatatatatatat
atatatttttttagatgttgcctcaacatgaaaaacagctatctgggggc
tagagagatggctcagtggttaagagcactgactgctcttccagaggtcc
cgagttcaattcccagcaaccacatggtggctcacaaccacctgtaatga
gatctgactgcctcttctgtgtgtctgaagacagctacagtgtactcata
tacataaactaagtaatctttaaaaaaaaaaaaaaaagacggaagaaaga
aaacagttaatggcttagagtgttcttcttgtaaagttttccacagttaa
aaaaaaagaagaagaaccaatctgaggctattggaagtaatttgctgatt
attaggctcatttatctgaccta
gaattcctcttcaggtatggattggggacgtggtgtgtaaatgaaggagt
atgcaaggtaaatgtagatcttcatcatcactatgggagatattttataa
caggtagctcagccagcaagtgcttgctctgtgagtacaagggacctgaa
ttggaacctctgagcccatgtttttagaaagctggatacagagcatgtag
ttataatcctagctccaggaaggtggagtcaggtggatccctgggactta
ctgggcagctatctagcctacttggtgcccttccgggccagagaaaggca
gcacccgagaaatgacacctgaagttatctcctttggttctgtatccatg
cacacacacattacacatgaataccctggcctgggcagataccctgtaga
tgtgcttatgattctcaggccatggccctgttcatctccccctgccttgt
ctgagctgcagctttcgtaaaggccttctggattctttcaaacatacccc
atgggacatcacttttcttaggcacagctgttctccttgggccctctagt
gccttgattttacagctagagcgttgtgtcccgcagattagggacccctg
ggcatgtcagagctgtgattgacttttctccatgacccaccagcaggttc
tttagcctcctgggtcagatatccatccgctaccttacaagctgaagaat
atataacacggtcactttctcttattatttgataaatggagaagtcatgg
ccaatcctgtgcttcttaagatactccgtcctggcccgccctgtatgtga
caggcagtgactatgtgggcatcttgctaagtgctgctcgggattgctct
gaaacatccctaagagcctagcatggcacaaggtactctgagatgtaagt
tactctactcactcttttgggggcatccagccctggttcatgtgctgagc
agaggaggtaatttaagatgcttcccctgcctaaggcagggtctctcgtg
ctttaagggcttcacagcccgatgggggtccctgtagtcctggaactctg
gtcatttcgaaatggaaccattgcacaggtgtccaaggaattacacggtg
caaactttgggggtgctctgcctctgctgggtcctcctggaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111580708_111581841
seq2: B6Ng01-019J15.b_46_1168 (reverse)

seq1  TAGGTCAGATTTAATGAGCTTAATAATCAGCAAATTTACTTCCAATAGGC  50
      ||||||||| | ||||||| |||||||||||||| |||||||||||| ||
seq2  TAGGTCAGA-TAAATGAGCCTAATAATCAGCAAA-TTACTTCCAATA-GC  47

seq1  CTCAGATTTGGTTCTTCTTCTTTTTTTTTTTAACTTGTGAAAACTTTACA  100
      |||||| |||||||||||||  |||||||||||||   ||||||||||||
seq2  CTCAGA-TTGGTTCTTCTTC--TTTTTTTTTAACTGTGGAAAACTTTACA  94

seq1  AGAGAAACACTCTTAAGCCATTAACTGTTTTTCTTTCTTTCTGTCTTTTT  150
      |||  ||||||| |||||||||||||| ||||||||| ||| ||||||||
seq2  AGAAGAACACTC-TAAGCCATTAACTG-TTTTCTTTC-TTCCGTCTTTTT  141

seq1  TTTTTTTTTTTAAAGATTTACTTAGTTTATGTATATGAGTACACTGTAGC  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTAAAGA-TTACTTAGTTTATGTATATGAGTACACTGTAGC  190

seq1  TGTCTTCAGACACACCAGAAGAGGCAGTCAGATCTCATTACAGGTGGTTG  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGACACA-CAGAAGAGGCAGTCAGATCTCATTACAGGTGGTTG  239

seq1  TGAGCCACCATGTGGTTGCTGGGAATTGAACTCGGGACCTCTGGAAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCATGTGGTTGCTGGGAATTGAACTCGGGACCTCTGGAAGAGC  289

seq1  AGTCAGTGCTCTTAACCACTGAGCCATCTCTCTAGCCCCCAGATAGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGCTCTTAACCACTGAGCCATCTCTCTAGCCCCCAGATAGCTGT  339

seq1  TTTTCATGTTGAGGCAACATCTAAAAAAATATATATATATATATATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGTTGAGGCAACATCTAAAAAAATATATATATATATATATTATT  389

seq1  TAACATTTAATCAGTATAGTGGGCACTTATAACTTATGTTAATGGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTAATCAGTATAGTGGGCACTTATAACTTATGTTAATGGTTTCT  439

seq1  GCTTTGGTCACTGGAATACGTTACAGTGTATTCCAAATCCCTCTCTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGTCACTGGAATACGTTACAGTGTATTCCAAATCCCTCTCTGTAG  489

seq1  TTAATTTCTTTTAGTTGTTACTCATTTAGGGCTCAGTTACCACATTTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTTTTAGTTGTTACTCATTTAGGGCTCAGTTACCACATTTCAC  539

seq1  AAATGTTATTCCTCTTCCTGCTCTGCTGACGAGGCCCATGTCTGCAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTATTCCTCTTCCTGCTCTGCTGACGAGGCCCATGTCTGCAGTGC  589

seq1  TGGCGTGCAGATTTGAGTGAAGCCGCAACACTTCTAGCAATTAATCGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGCAGATTTGAGTGAAGCCGCAACACTTCTAGCAATTAATCGAGC  639

seq1  TTGGAAGTAATGTAAATAAAAGAAAAGAACATTAAGAATTACTTTATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTAATGTAAATAAAAGAAAAGAACATTAAGAATTACTTTATAAG  689

seq1  CTAAGCTGAGAGACAATGCAGAGGGGAGTGAGGCTGGCAGGGCGCTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTGAGAGACAATGCAGAGGGGAGTGAGGCTGGCAGGGCGCTCTCA  739

seq1  GGCTCCGGATGAGTCATGTGCCTGAGGAAGGAAGGGTCACCTACATCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCGGATGAGTCATGTGCCTGAGGAAGGAAGGGTCACCTACATCAGC  789

seq1  AGTTATGAATGGAAAGACGAGTGAAACCGCTCGGTTATAATTTGCCGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAATGGAAAGACGAGTGAAACCGCTCGGTTATAATTTGCCGAAG  839

seq1  ATGAATATACTTGTCTGCAGTGTTCTGTGACTTAATCATTTTTATTACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATACTTGTCTGCAGTGTTCTGTGACTTAATCATTTTTATTACTA  889

seq1  TGCCTGCTCTGCCGACAGTGCTTAGGTACCAGCTTGACATAAAATGAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTCTGCCGACAGTGCTTAGGTACCAGCTTGACATAAAATGAGTT  939

seq1  CTGCCTTCCAGATGTCCTTCTTGTCAGAGGTTTGAGGAGCAGAATATTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCCAGATGTCCTTCTTGTCAGAGGTTTGAGGAGCAGAATATTCT  989

seq1  TTCTGTGACACACAGTGGATGCAGAGAGTCTCCCAAATCACCACGTCATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGACACACAGTGGATGCAGAGAGTCTCCCAAATCACCACGTCATA  1039

seq1  AATTCCCCTCACTTCATCCTTCGTCTGCACCCTTAGGTCTCTCTGACCAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCCTCACTTCATCCTTCGTCTGCACCCTTAGGTCTCTCTGACCAC  1089

seq1  TCGATGACTTTCGGATCTCGCTCTCTTTGAATTC  1134
      ||||||||||||||||||||||||||||||||||
seq2  TCGATGACTTTCGGATCTCGCTCTCTTTGAATTC  1123

seq1: chr8_111446128_111447279
seq2: B6Ng01-019J15.g_67_1211

seq1  GAATTCCTCTTCAGGTATGGATTGGGGACGTGGTGTGTAAATGAAGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCAGGTATGGATTGGGGACGTGGTGTGTAAATGAAGGAGT  50

seq1  ATGCAAGGTAAATGTAGATCTTCATCATCACTATGGGAGATATTTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGGTAAATGTAGATCTTCATCATCACTATGGGAGATATTTTATAA  100

seq1  CAGGTAGCTCAGCCAGCAAGTGCTTGCTCTGTGAGTACAAGGGACCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCTCAGCCAGCAAGTGCTTGCTCTGTGAGTACAAGGGACCTGAA  150

seq1  TTGGAACCTCTGAGCCCATGTTTTTAGAAAGCTGGATACAGAGCATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACCTCTGAGCCCATGTTTTTAGAAAGCTGGATACAGAGCATGTAG  200

seq1  TTATAATCCTAGCTCCAGGAAGGTGGAGTCAGGTGGATCCCTGGGACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATCCTAGCTCCAGGAAGGTGGAGTCAGGTGGATCCCTGGGACTTA  250

seq1  CTGGGCAGCTATCTAGCCTACTTGGTGCCCTTCCGGGCCAGAGAAAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGCTATCTAGCCTACTTGGTGCCCTTCCGGGCCAGAGAAAGGCA  300

seq1  GCACCCGAGAAATGACACCTGAAGTTATCTCCTTTGGTTCTGTATCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCGAGAAATGACACCTGAAGTTATCTCCTTTGGTTCTGTATCCATG  350

seq1  CACACACACATTACACATGAATACCCTGGCCTGGGCAGATACCCTGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATTACACATGAATACCCTGGCCTGGGCAGATACCCTGTAGA  400

seq1  TGTGCTTATGATTCTCAGGCCATGGCCCTGTTCATCTCCCCCTGCCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTATGATTCTCAGGCCATGGCCCTGTTCATCTCCCCCTGCCTTGT  450

seq1  CTGAGCTGCAGCTTTCGTAAAGGCCTTCTGGATTCTTTCAAACATACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGCAGCTTTCGTAAAGGCCTTCTGGATTCTTTCAAACATACCCC  500

seq1  ATGGGACATCACTTTTCTTAGGCACAGCTGTTCTCCTTGGGCCCTCTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACATCACTTTTCTTAGGCACAGCTGTTCTCCTTGGGCCCTCTAGT  550

seq1  GCCTTGATTTTACAGCTAGAGCGTTGTGTCCCGCAGATTAGGGACCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGATTTTACAGCTAGAGCGTTGTGTCCCGCAGATTAGGGACCCCTG  600

seq1  GGCATGTCAGAGCTGTGATTGAC-TTTCTCCATGACCCACCAGCAGGTTC  649
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGCATGTCAGAGCTGTGATTGACTTTTCTCCATGACCCACCAGCAGGTTC  650

seq1  TTTAGCCTCCTGGGTCAGATATCCATCCGCTACCTTACAAGCTGAAGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTCCTGGGTCAGATATCCATCCGCTACCTTACAAGCTGAAGAAT  700

seq1  ATATAACACGGTCACTTTCTCTTATTATTTGATAAATGGAGAAGTCATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACACGGTCACTTTCTCTTATTATTTGATAAATGGAGAAGTCATGG  750

seq1  CCAATCCTGTGCTTCTTAAGATACTCCGTCCTGGCCCGCCCTGTATGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCTGTGCTTCTTAAGATACTCCGTCCTGGCCCGCCCTGTATGTGA  800

seq1  CAGGCAGTGACTATGT-GGCATC-TGCTAAGTGCTGCTCGGGACTGCTCT  847
      |||||||||||||||| |||||| ||||||||||||||||||| ||||||
seq2  CAGGCAGTGACTATGTGGGCATCTTGCTAAGTGCTGCTCGGGATTGCTCT  850

seq1  GAAACATCCCTAAGAGCCTAGCATGGCACAAGGTACTCTGAGATGTAAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCCCTAAGAGCCTAGCATGGCACAAGGTACTCTGAGATGTAAGT  900

seq1  TACTCTACTCACTC-TTTGGGGGCATCCAGCCCTGTTTCATGTTGCTGAG  946
      |||||||||||||| |||||||||||||||||||| |||||| |||||||
seq2  TACTCTACTCACTCTTTTGGGGGCATCCAGCCCTGGTTCATG-TGCTGAG  949

seq1  CAGAAGAGGTAAATTTAGGATGCTTCCCCTTGCCTAAAGCCAGGGTCTCT  996
      |||| ||||| |||||| ||||||||||| ||||| ||| ||||||||||
seq2  CAGAGGAGGT-AATTTAAGATGCTTCCCC-TGCCT-AAGGCAGGGTCTCT  996

seq1  CTGTCATACAGGGCTTCACAGCCCGATGTGGGCTCCTGTTAGTCCCTGGA  1046
      |   | |  ||||||||||||||||||| |||  |||| |||| ||||||
seq2  CGTGCTTTAAGGGCTTCACAGCCCGATGGGGGTCCCTG-TAGT-CCTGGA  1044

seq1  ACTCCTGTTCATTTCTGAAAATGAAACCATTGCAGCAGGTGTCCAAGACA  1096
      ||| ||| |||||||   ||||| |||||||||| ||||||||||||  |
seq2  ACT-CTGGTCATTTC--GAAATGGAACCATTGCA-CAGGTGTCCAAGGAA  1090

seq1  TTACAGCGTGCTAGACTTTGTGGTGTGCTGCGCCTTCTGCTGGG--CTCC  1144
      |||||  |||| | |||||| || |||||  ||| |||||||||  ||||
seq2  TTACACGGTGC-AAACTTTG-GGGGTGCTCTGCC-TCTGCTGGGTCCTCC  1137

seq1  TGGAAGCC  1152
      ||||||||
seq2  TGGAAGCC  1145