BAC Information

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BAC

Clone NameB6Ng01-020E11
Chromosome8 (Build37)
Map Location 52,268,097 - 52,269,262
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039954, LOC100039966
Downstream geneLOC667517, LOC623872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020E11.bB6Ng01-020E11.g
ACCDH853123DH853124
length1,1251,038
definitionDH853123|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E11, 5' end.DH853124|Mus musculus domesticus DNA, BAC clone: B6Ng01-020E11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttagtgttcacatgagaaataacacacaacacagttaagaagat
tgagagattggttagcacttgaacaaactctctgctcttgtagaggatcc
aggcttcattcacagaacccattttggatggatacccatcaacatgaagt
tcataggagatcctaacaccctcttctgacctatttattggcatatatgt
ggtcctaatatatacattaaggcatttatacacataaaaataagagatgt
cttcaataaaacatgtttttgaagctcaaaacaatgttttgaagacctta
ggtacagaatataagtatactaatgaatatttttactaattgtgatttgt
ttatgacaaggtctttggaaaggttttagaatgtagaaaatttaacatac
atatgtacatgcacagaaatcattatttgtaccatatacacagaaataaa
attaatgtacatttaagtttcctagaagagttcacagtttttaagagtga
ataacagaacaaacacgagcatatgttatatttctttcagaaatgggttt
gatgaaatgaagaaatcctgaaagatgtgttaggaaagattatgaatatg
caaccagaaagattcaaactcaggagattgtgaatcaactatttctaaat
gttttttaagcagccaacatatctgaaggatttagggatttcaagtaaga
gacccaatagacgttcattcaatgtcatggtataaaactgataggaagag
tctttacaaaaataacatttcaagaaattcccccccaaataaactactaa
gtcaagaagtagagagctaatataagaactgagttggaaatcatttcaat
aggatgggataaaactggggggaatggtacccgtgactataagtacattc
tttttaattatgttatgccgaagacactgttaaatttagcttatcaaaga
gataatatgattgatcttaagattactgtttctgcaaagatgattgtcat
gaagcaaagacaaataggtcactccttagtgatggaggtgcatctattaa
catttagttaacctatgctgctatggatattgacgatggacttctagact
cgaattatttctcatggatgtattg

gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattcgatattagtcccc
tatctgatttgggataggtaaagatcctttcccaatctgttggtggtctt
ttttgtcttattgaagatgtcttttgccttgcagaagctttgcaatttta
tgaggtcccatttatagattctcgatcttattgcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggcttttccctat
tttctcctctataagtttcagtgtctctggttttatggggcgttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacatgataactgccagttgtgcctgcaccatttgttgaaaat
gctgtcttttttccactagatggttttagctcccttgtccaagatcaagt
gaccataggtgtgtggattcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtacagttttaggtcagcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctcagttttttattattccagatga
atctgccgattgccctttctaattcgtgaagaattgagttggacttttga
tggggattgcattgaatctgtagattgcttttggcagatagccattttta
caatgttgatcctgccaatcatgagcatgagagatctttccatcttctga
gatctcttaatttctttcttcagagactagaagttcttatcatacagatc
tttcacttccttagttagagtcacgccaaggtattttatattatttgtga
ctattggagaggtgttattccctaatttctttctaagctgttaatcttgt
gtaaagaaaggccttgacttgtttgagtatattatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52268097_52269262
seq2: B6Ng01-020E11.b_43_1167 (reverse)

seq1  CAATACATCACTAGTAGAAATAATTTCTGAGTCTAGATAGTCCAATCGCT  50
      ||||||||  | |  ||||||||||   ||||||||| ||||| |||| |
seq2  CAATACAT--CCATGAGAAATAATT--CGAGTCTAGA-AGTCC-ATCG-T  43

seq1  CAGATATACCCATTAAGCAGGCACTAGGTATAACATAAATGGTTAATTAG  100
      ||   ||| ||||  |||| ||| ||||| |||| ||||| ||||| |||
seq2  CA---ATATCCAT--AGCA-GCA-TAGGT-TAAC-TAAAT-GTTAA-TAG  82

seq1  ATTGGCACCTCCATCACCTAAGGAGTTGAACCCTATGTGTTCCTTTTGCT  150
      ||  |||||||||||| |||||||| |||  ||||| |||    ||||| 
seq2  AT--GCACCTCCATCA-CTAAGGAG-TGA--CCTATTTGT---CTTTGC-  122

seq1  TTCATGGACAATCAATCCTTTTGGCAGAAAACAGTTATTCTTTAAGATTC  200
      ||||| ||||||||    | || |||| ||||||| ||   |||||| ||
seq2  TTCAT-GACAATCA----TCTTTGCAG-AAACAGTAAT--CTTAAGA-TC  163

seq1  AATCATATTTATTCTCTTTTGATAAGCTAAATTTAACAGTGTCTTCGGCA  250
      |||||||||   |||| |||||||||||||||||||||||||||||||||
seq2  AATCATATT--ATCTC-TTTGATAAGCTAAATTTAACAGTGTCTTCGGCA  210

seq1  TAACAATAATTAAAAAGAATGTACTTATAGTCACGGGTACCATTCCCCCC  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAC-ATAATTAAAAAGAATGTACTTATAGTCACGGGTACCATTCCCCCC  259

seq1  AGTTTTATCCCATCCTATTGAAATGATTTCCAACTCAGTTCTTATATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATCCCATCCTATTGAAATGATTTCCAACTCAGTTCTTATATTAG  309

seq1  CTCTCTACTTCTTGACTTAGTAGTTTATTTGGGGGGGAATTTCTTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACTTCTTGACTTAGTAGTTTATTTGGGGGGGAATTTCTTGAAAT  359

seq1  GTTATTTTTGTAAAGACTCTTCCTATCAGTTTTATACCATGACATTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTTGTAAAGACTCTTCCTATCAGTTTTATACCATGACATTGAAT  409

seq1  GAACGTCTATTGGGTCTCTTACTTGAAATCCCTAAATCCTTCAGATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTCTATTGGGTCTCTTACTTGAAATCCCTAAATCCTTCAGATATGT  459

seq1  TGGCTGCTTAAAAAACATTTAGAAATAGTTGATTCACAATCTCCTGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTTAAAAAACATTTAGAAATAGTTGATTCACAATCTCCTGAGTT  509

seq1  TGAATCTTTCTGGTTGCATATTCATAATCTTTCCTAACACATCTTTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTTCTGGTTGCATATTCATAATCTTTCCTAACACATCTTTCAGG  559

seq1  ATTTCTTCATTTCATCAAACCCATTTCTGAAAGAAATATAACATATGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCATTTCATCAAACCCATTTCTGAAAGAAATATAACATATGCTC  609

seq1  GTGTTTGTTCTGTTATTCACTCTTAAAAACTGTGAACTCTTCTAGGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTTCTGTTATTCACTCTTAAAAACTGTGAACTCTTCTAGGAAAC  659

seq1  TTAAATGTACATTAATTTTATTTCTGTGTATATGGTACAAATAATGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTACATTAATTTTATTTCTGTGTATATGGTACAAATAATGATTT  709

seq1  CTGTGCATGTACATATGTATGTTAAATTTTCTACATTCTAAAACCTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATGTACATATGTATGTTAAATTTTCTACATTCTAAAACCTTTCC  759

seq1  AAAGACCTTGTCATAAACAAATCACAATTAGTAAAAATATTCATTAGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTTGTCATAAACAAATCACAATTAGTAAAAATATTCATTAGTAT  809

seq1  ACTTATATTCTGTACCTAAGGTCTTCAAAACATTGTTTTGAGCTTCAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATTCTGTACCTAAGGTCTTCAAAACATTGTTTTGAGCTTCAAAA  859

seq1  ACATGTTTTATTGAAGACATCTCTTATTTTTATGTGTATAAATGCCTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTTATTGAAGACATCTCTTATTTTTATGTGTATAAATGCCTTAA  909

seq1  TGTATATATTAGGACCACATATATGCCAATAAATAGGTCAGAAGAGGGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATTAGGACCACATATATGCCAATAAATAGGTCAGAAGAGGGTG  959

seq1  TTAGGATCTCCTATGAACTTCATGTTGATGGGTATCCATCCAAAATGGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGATCTCCTATGAACTTCATGTTGATGGGTATCCATCCAAAATGGGT  1009

seq1  TCTGTGAATGAAGCCTGGATCCTCTACAAGAGCAGAGAGTTTGTTCAAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAATGAAGCCTGGATCCTCTACAAGAGCAGAGAGTTTGTTCAAGT  1059

seq1  GCTAACCAATCTCTCAATCTTCTTAACTGTGTTGTGTGTTATTTCTCATG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACCAATCTCTCAATCTTCTTAACTGTGTTGTGTGTTATTTCTCATG  1109

seq1  TGAACACTAAGAATTC  1166
      ||||||||||||||||
seq2  TGAACACTAAGAATTC  1125


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