BAC Information

Click to search

BAC

Clone NameB6Ng01-020F07
Chromosome8 (Build37)
Map Location 5,651,025 - 5,768,642
singlet/doubletdoublet
Overlap genenone
Upstream geneEG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
Downstream geneLOC100040360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020F07.bB6Ng01-020F07.g
ACCDH853161DH853162
length1,0921,132
definitionDH853161|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F07, 5' end.DH853162|Mus musculus domesticus DNA, BAC clone: B6Ng01-020F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,651,025 - 5,652,137)(5,767,493 - 5,768,642)
sequence
gaattcatataatcgtatatgtattcatattttaattttacaagtatata
tgtatatgtgcgcatatatatatatatatgtgtatatatatatgccataa
caatgtatggaatttaaaaatatagaatataatgctatttttttattctg
tgtaggtaataaagtatttccatgcatcttaccatgcttagttatctatg
tacatgtttaatatgagtaactataattcctccaaattcagtgtggtata
attatcaaaaacaaattctaaaaacaaaactaataacaataaccagcata
cttatacacaagatttttctttaatttaaataaacatatttctttattca
tgttacacatcaagtctgatacaggatacatgtacatcatccattttgct
tcactgttgaaaataagtatatgcttctatcctttttgcattatctagga
ttagtatgtttgctatgtcatggactaaagtaatcttaaaaactctagta
aagttcctgtgggcatatggaaaagagctttagcatagattcaactgcat
gaagataggccattttacagatcagtgaggcttaggtccatgctagcagc
atgtttcagtcattacttcaatgaaaatttcaagacatactcaatgatat
agatgagcaaagtatttcatttatagatactttatattcattggtaataa
actgaagtatttgacatgagacctaggttgccattcatatgattagcttc
ttatgtctaaagttcttaatttgggatttagaacaatattgcacagcaaa
tagttgacttccttttcatatatatattgatattttcagatgagattcat
agaattcaccagtatacagatgaatccataaacaaaggaataacagtccc
cagtagatttaaatagttttcaactattcatgccacatattttattgatc
aacatatgcagatattttattttgaacttagcataaatacaaacgtcaga
atggggtaaatttggccagatcattttacttttatattcagtaagcaaga
cctctaagaagctagtagaaacaaattgattatttgccattt

gaattcttttttgattagatccactgaccttatgcatttttagaaaatat
atttttgggaaatgaaactatgactatcatgtagaaataaattgatactt
gccaaaactaagggcaatgctagaagaaatgaacacatgaaggcatgtct
tgaagaactaaaagtgcaagatattatattccacccaaatgtacaatcct
gatgctcaaggtgcaaaacctcagacaatattagtaattgcggggggctg
gtgagatggctcagtgggtaagagcacctgactgctcttccgaaggtcag
gagttcaaatcccagcaaccacatggtggctcacaaccatctgtaacaag
atctgactccctcttctggagtgtctgaagacagctacagtgtacttaca
tataataaataaataaatcttaaaaaaatatattagtaattgcttagaga
acaaaatgaccatctttgagtttcttttctgttatcaaacacttgatgac
ttttttatgggatacagtgtgctgaactttccaattaatctcagtagtac
agtcttttttgtggactactgcattgattatcatgtgattttgtctatgc
agcactgctttaattaaaaaattaatccagactgaatttgtttgctctta
gcactccaagtctaagatgcatgcaagtatatcagcagcacagatagaaa
catggtagacatccacagatcacaactctgccatcttaactaatacatca
gatttacacagtaaatgtaaaaaaagggccaagggtccaatgtgatcatc
cacaaaccatataaaactgagttgtgcttcataaaacaagtaatcagtaa
caagacacaagacaaagatttcaaatgttctgaactgtgagtgtatgaag
taagggcatcatagaaattaattgagcaaatatcttcacattgtgtgcta
attatggtgtaaagtatctgaggattagaagctctgaagacttgcatcca
gatactctgtactcaacagcatggatacctgtaatccactggagtgagga
gcttctcttgttacagtctttagactccattgttcacaccatgctcaatc
ctggtaacgaagcagaatctgaagtcataccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_5651025_5652137
seq2: B6Ng01-020F07.b_45_1136

seq1  GAATTCATATAATCGTATATGTATTCATATTTTAATTTTACAAGTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAATCGTATATGTATTCATATTTTAATTTTACAAGTATATA  50

seq1  TGTATATGTGCGCATATATATATATATATGTGTATATATATATGCCATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGTGCGCATATATATATATATATGTGTATATATATATGCCATAA  100

seq1  CAATGTATGGAATTTAAAAATATAGAATATAATGCTATTTTTTTATTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTATGGAATTTAAAAATATAGAATATAATGCTATTTTTTTATTCTG  150

seq1  TGTAGGTAATAAAGTATTTCCATGCATCTTACCATGCTTAGTTATCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTAATAAAGTATTTCCATGCATCTTACCATGCTTAGTTATCTATG  200

seq1  TACATGTTTAATATGAGTAACTATAATTCCTCCAAATTCAGTGTGGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTTAATATGAGTAACTATAATTCCTCCAAATTCAGTGTGGTATA  250

seq1  ATTATCAAAAACAAATTCTAAAAACAAAACTAATAACAATAACCAGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAAAAACAAATTCTAAAAACAAAACTAATAACAATAACCAGCATA  300

seq1  CTTATACACAAGATTTTTCTTTAATTTAAATAAACATATTTCTTTATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACACAAGATTTTTCTTTAATTTAAATAAACATATTTCTTTATTCA  350

seq1  TGTTACACATCAAGTCTGATACAGGATACATGTACATCATCCATTTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACATCAAGTCTGATACAGGATACATGTACATCATCCATTTTGCT  400

seq1  TCACTGTTGAAAATAAGTATATGCTTCTATCCTTTTTGCATTATCTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTGAAAATAAGTATATGCTTCTATCCTTTTTGCATTATCTAGGA  450

seq1  TTAGTATGTTTGCTATGTCATGGACTAAAGTAATCTTAAAAACTCTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATGTTTGCTATGTCATGGACTAAAGTAATCTTAAAAACTCTAGTA  500

seq1  AAGTTCCTGTGGGCATATGGAAAAGAGCTTTAGCATAGATTCAACTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTGTGGGCATATGGAAAAGAGCTTTAGCATAGATTCAACTGCAT  550

seq1  GAAGATAGGCCATTTTACAGATCAGTGAGGCTTAGGTCCATGCTAGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAGGCCATTTTACAGATCAGTGAGGCTTAGGTCCATGCTAGCAGC  600

seq1  ATGTTTCAGTCATTACTTCAATGAAAATTTCAAGACATACTCAATGATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCAGTCATTACTTCAATGAAAATTTCAAGACATACTCAATGATAT  650

seq1  AGATGAGCAAAGTATTTCATTTATAGATACTTTATATTCATTGGTAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGCAAAGTATTTCATTTATAGATACTTTATATTCATTGGTAATAA  700

seq1  ACTGAAGTATTTGACATGAGACCTAGGTTGCCATTCATATGATTAGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTATTTGACATGAGACCTAGGTTGCCATTCATATGATTAGCTTC  750

seq1  TTATGTCTAAAGTTCTTAATTTGGGATTTAGAACAATATTGCACAGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTAAAGTTCTTAATTTGGGATTTAGAACAATATTGCACAGCAAA  800

seq1  TAGTTGACTTCCTTTTCATATATATATTGATATTTTCAGATGAGATTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGACTTCCTTTTCATATATATATTGATATTTTCAGATGAGATTCAT  850

seq1  AGAATTCACCAGTATACAGATGAATCCATAAACAAAGGAAATAACAGTCC  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAATTCACCAGTATACAGATGAATCCATAAACAAAGG-AATAACAGTCC  899

seq1  CCAGTAGATTTAAATAGTTTTCAACTATTCATGCCACATATTTTATTGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGATTTAAATAGTTTTCAACTATTCATGCCACATATTTTATTGAT  949

seq1  CAAACATATGCAAGATATTTTATTTTGAAACTTAGCATAAATACAAAAGG  1000
      | ||||||||| ||||||||||||||| |||||||||||||||| ||| |
seq2  C-AACATATGC-AGATATTTTATTTTG-AACTTAGCATAAATAC-AAACG  995

seq1  CCAGAATGGGGTAAATTTTGGCCAGAATCATTTTTACATTTTTATTAATT  1050
       |||||||||||||| ||||||||| ||||||||   | ||||||  |||
seq2  TCAGAATGGGGTAAA-TTTGGCCAG-ATCATTTT---ACTTTTAT--ATT  1038

seq1  CAGTAAAAGCAAAGACCACCAAAGAAGCATAGTAGAAAACAAATATGTAT  1100
      ||||  |||| ||||||  | ||||||| |||||| |||||||| || ||
seq2  CAGT--AAGC-AAGACC-TCTAAGAAGC-TAGTAG-AAACAAAT-TG-AT  1080

seq1  TATTTTGCCATTT  1113
      || ||||||||||
seq2  TA-TTTGCCATTT  1092


seq1: chr8_5767493_5768642
seq2: B6Ng01-020F07.g_66_1197 (reverse)

seq1  GGGTATGACTTTCAGAATCCTGCTGTCGTTACCAGGATATTGAGGCATGG  50
      ||||||||| ||||| || ||||| |||||||||||  ||||| ||||||
seq2  GGGTATGAC-TTCAG-ATTCTGCT-TCGTTACCAGG--ATTGA-GCATGG  44

seq1  TGTGAGACAATGGAGTTCTTAAAGACTGTAACAAGAGAAGCTTCCTCACT  100
      ||||| ||||||||||   |||||||||||||||||||||| ||||||||
seq2  TGTGA-ACAATGGAGT--CTAAAGACTGTAACAAGAGAAGC-TCCTCACT  90

seq1  CCAGTGGATTACAGGGTATCCATGGCTGTTGAGGTACAGAGTATACTGGA  150
      ||||||||||||| ||||||||| |||||||| ||||||||||| |||||
seq2  CCAGTGGATTACA-GGTATCCAT-GCTGTTGA-GTACAGAGTAT-CTGGA  136

seq1  TGCAGGGTCTTCAGAGGCTTCTATTCCTCAGATACTTTACACCATATTTA  200
      ||||  ||||||||| ||||||| |||||||||||||||||||||| |||
seq2  TGCA-AGTCTTCAGA-GCTTCTAATCCTCAGATACTTTACACCATAATTA  184

seq1  GCACACATAGTGAAAGATATTTGCTCAATTAATTTCTATGATGCCCTTAC  250
      |||||||  ||| |||||||||||||||||||||||||||||||||||||
seq2  GCACACAATGTG-AAGATATTTGCTCAATTAATTTCTATGATGCCCTTAC  233

seq1  TTCATACACTCACAGTTCAGAACATTTGAAATCTTTGTCTTGTGTCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACACTCACAGTTCAGAACATTTGAAATCTTTGTCTTGTGTCTTGT  283

seq1  TACTGATTTACTTGTTTTATGAAGCACAACTCAGTTTTATATGGTTTGTG  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGA-TTACTTGTTTTATGAAGCACAACTCAGTTTTATATGGTTTGTG  332

seq1  GATGATCACATTGGACCCTTGGCCCTTTTTTTACATTTACTGTGTAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCACATTGGACCCTTGGCCCTTTTTTTACATTTACTGTGTAAATC  382

seq1  TGATGTATTAGTTAAGATGGCAGAGTTGTGATCTGTGGATGTCTACCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATTAGTTAAGATGGCAGAGTTGTGATCTGTGGATGTCTACCATG  432

seq1  TTTCTATCTGTGCTGCTGATATACTTGCATGCATCTTAGACTTGGAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCTGTGCTGCTGATATACTTGCATGCATCTTAGACTTGGAGTGC  482

seq1  TAAGAGCAAACAAATTCAGTCTGGATTAATTTTTTAATTAAAGCAGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAAACAAATTCAGTCTGGATTAATTTTTTAATTAAAGCAGTGCT  532

seq1  GCATAGACAAAATCACATGATAATCAATGCAGTAGTCCACAAAAAAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGACAAAATCACATGATAATCAATGCAGTAGTCCACAAAAAAGACT  582

seq1  GTACTACTGAGATTAATTGGAAAGTTCAGCACACTGTATCCCATAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTACTGAGATTAATTGGAAAGTTCAGCACACTGTATCCCATAAAAAA  632

seq1  GTCATCAAGTGTTTGATAACAGAAAAGAAACTCAAAGATGGTCATTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAAGTGTTTGATAACAGAAAAGAAACTCAAAGATGGTCATTTTGT  682

seq1  TCTCTAAGCAATTACTAATATATTTTTTTAAGATTTATTTATTTATTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGCAATTACTAATATATTTTTTTAAGATTTATTTATTTATTATA  732

seq1  TGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGAT  782

seq1  CTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTC  832

seq1  CTGACCTTCGGAAGAGCAGTCAGGTGCTCTTACCCACTGAGCCATCTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTTCGGAAGAGCAGTCAGGTGCTCTTACCCACTGAGCCATCTCAC  882

seq1  CAGCCCCCCGCAATTACTAATATTGTCTGAGGTTTTGCACCTTGAGCATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCCGCAATTACTAATATTGTCTGAGGTTTTGCACCTTGAGCATC  932

seq1  AGGATTGTACATTTGGGTGGAATATAATATCTTGCACTTTTAGTTCTTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTACATTTGGGTGGAATATAATATCTTGCACTTTTAGTTCTTCA  982

seq1  AGACATGCCTTCATGTGTTCATTTCTTCTAGCATTGCCCTTAGTTTTGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGCCTTCATGTGTTCATTTCTTCTAGCATTGCCCTTAGTTTTGGC  1032

seq1  AAGTATCAATTTATTTCTACATGATAGTCATAGTTTCATTTCCCAAAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCAATTTATTTCTACATGATAGTCATAGTTTCATTTCCCAAAAAT  1082

seq1  ATATTTTCTAAAAATGCATAAGGTCAGTGGATCTAATCAAAAAAGAATTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTAAAAATGCATAAGGTCAGTGGATCTAATCAAAAAAGAATTC  1132


| Home | SequenceCutter | Blast | Download |