BAC Information

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BAC

Clone NameB6Ng01-020O15
Chromosome8 (Build37)
Map Location 120,269,313 - 120,407,650
singlet/doubletdoublet
Overlap geneHsd17b2, Mphosph6
Upstream geneLOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020O15.bB6Ng01-020O15.g
ACCDH853577DH853578
length3711,052
definitionDH853577|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O15, 5' end.DH853578|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,269,313 - 120,269,683)(120,406,588 - 120,407,650)
sequence
agcagaagccacaaagaggaatgaatgtctggaaccatcacggaggattt
tgtaatataataaagactattttgagggggaaaaacaaaagagcctaggg
caatggaaatggcctattctatacagtctgcatttggatcctcagtagcc
agccgtggcagcatgtacccagaatcctagcactggagagatagaaacag
gctcatacctgaagctcattggctagtcatcctagatgaatgagcaagct
ccagattcaaggagaccatgtctaaagaaataaggtggagagaaagtgag
aaagacacttagtgctgagctctggcttccataggtatacacgcttgtgt
gtgtgtgtgtggtgggggggg
gaattctcatctcagacccccatcctcaggaccatgtctgctcaaggctc
aggtcaccatgtgccaaaatccactgactcatctgcactgagataaccac
cttgggctctccattgatgacaggtacagtagaagttctagggtgaggca
cttgctgaaacacacaggctcctctgacatctgtctttggcttataactc
cggagactgagctgtccttagatgtcacacggccttctccttcctcctca
ctttcccttcaagtgacacttgtatgccaatccagatcgctccctgtttg
gccaattttgagtttctgtcatgggcttttccctcataaaattcttgtat
atatgcacgcagtcctcacaggtacctctcagaagagctgaacaaacatg
gttacgaccaaacccccatccatttcctctcatgaaatctactacttacc
cttcctgtcaacacctagaatttgctttcctcacttttttatataatatc
tataaatgatagaagaaaatggggctggagatgagacagtctcgccctac
agtccaggctggcctcgaactcaccatgatccttctgcattagcctccta
aatgactgggattacaaacataagccaccacacccatctttgaggaagtt
gctttttttttttaatatttcacaatagagaaagacaaattacttccagc
aagtccagtaatggttttattgttgtgaagagacaccacaaccacagcaa
ctcttacaaagaaagacatttcactgaggctagtttacagtttactgaga
ggtctatatcttgatctgcaggcagcaggagactgtgccacactgggcat
agcctgagcatagaacaccttaatgcttaccctcacaccttgtaacacag
taccactccctatgagccaagcattcaacacatgagtctacggggccggt
ctacttgtaaccaccacagtgtgataggtaagaaaacactggtggaaagt
ttacattctgaataattatactttagatctacaattcttgggataatcca
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_120269313_120269683
seq2: B6Ng01-020O15.b_52_422

seq1  AGCAGAAGCCACAAAGAGGAATGAATGTCTGGAACCATCACGGAGGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGCCACAAAGAGGAATGAATGTCTGGAACCATCACGGAGGATTT  50

seq1  TGTAATATAATAAAGACTATTTTGAGGGGGAAAAACAAAAGAGCCTAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATAATAAAGACTATTTTGAGGGGGAAAAACAAAAGAGCCTAGGG  100

seq1  CAATGGAAATGGCCTATTCTATACAGTCTGCATTTGGATCCTCAGTAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAATGGCCTATTCTATACAGTCTGCATTTGGATCCTCAGTAGCC  150

seq1  AGCCGTGGCAGCATGTACCCAGAATCCTAGCACTGGAGAGATAGAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTGGCAGCATGTACCCAGAATCCTAGCACTGGAGAGATAGAAACAG  200

seq1  GCTCATACCTGAAGCTCATTGGCTAGTCATCCTAGATGAATGAGCAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATACCTGAAGCTCATTGGCTAGTCATCCTAGATGAATGAGCAAGCT  250

seq1  CCAGATTCAAGGAGACCATGTCTAAAGAAATAAGGTGGAGAGAAAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCAAGGAGACCATGTCTAAAGAAATAAGGTGGAGAGAAAGTGAG  300

seq1  AAAGACACTTAGTGCTGAGCTCTGGCTTCCATAGGTATACACGCTTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACTTAGTGCTGAGCTCTGGCTTCCATAGGTATACACGCTTGTGT  350

seq1  GTGTGTGTGTGGTGGGGGGGG  371
      |||||||||||||||||||||
seq2  GTGTGTGTGTGGTGGGGGGGG  371

seq1: chr8_120406588_120407650
seq2: B6Ng01-020O15.g_70_1121 (reverse)

seq1  TTTGGGTTTATCCCAAAGAATTGTAGATCTAAAGGTATAATTATTCAAGG  50
       || || ||||||| |||||||||||||||||| |||||||||||||  |
seq2  -TTTGGATTATCCC-AAGAATTGTAGATCTAAA-GTATAATTATTCA--G  45

seq1  ATTGTAAACTTTTTCCACCAGTGTTTTCTTACCTATCACACTGTGGTGGT  100
      | |||||||  |||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAC--TTTCCACCAGTGTTTTCTTACCTATCACACTGTGGTGGT  93

seq1  TACAAGTAGAACCGGCCCCCGTAGACTCATGTGTTTGAATGCTTGGCTCA  150
      ||||||||| ||||| ||||||||||||||||| ||||||||||||||||
seq2  TACAAGTAG-ACCGG-CCCCGTAGACTCATGTG-TTGAATGCTTGGCTCA  140

seq1  TAGGGAGTGGTACTGTTGTTACAAGGTGTGAGGGTAAGCATTAAGGTGTT  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAGGGAGTGGTACTG-TGTTACAAGGTGTGAGGGTAAGCATTAAGGTGTT  189

seq1  CTATGCTCAGGCTATGCCCAGTGTGGCACAGTCTCCTGCTGCCTGCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTCAGGCTATGCCCAGTGTGGCACAGTCTCCTGCTGCCTGCAGAT  239

seq1  CAAGATATAGACCTCTCAGTAAACTGTAAACTAGCCTCAGTGAAATGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATAGACCTCTCAGTAAACTGTAAACTAGCCTCAGTGAAATGTCT  289

seq1  TTCTTTGTAAGAGTTGCTGTGGTTGTGGTGTCTCTTCACAACAATAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTAAGAGTTGCTGTGGTTGTGGTGTCTCTTCACAACAATAAAAC  339

seq1  CATTACTGGACTTGCTGGAAGTAATTTGTCTTTCTCTATTGTGAAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGGACTTGCTGGAAGTAATTTGTCTTTCTCTATTGTGAAATATT  389

seq1  AAAAAAAAAAAGCAACTTCCTCAAAGATGGGTGTGGTGGCTTATGTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGCAACTTCCTCAAAGATGGGTGTGGTGGCTTATGTTTGT  439

seq1  AATCCCAGTCATTTAGGAGGCTAATGCAGAAGGATCATGGTGAGTTCGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGTCATTTAGGAGGCTAATGCAGAAGGATCATGGTGAGTTCGAG  489

seq1  GCCAGCCTGGACTGTAGGGCGAGACTGTCTCATCTCCAGCCCCATTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGACTGTAGGGCGAGACTGTCTCATCTCCAGCCCCATTTTCT  539

seq1  TCTATCATTTATAGATATTATATAAAAAAGTGAGGAAAGCAAATTCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCATTTATAGATATTATATAAAAAAGTGAGGAAAGCAAATTCTAGG  589

seq1  TGTTGACAGGAAGGGTAAGTAGTAGATTTCATGAGAGGAAATGGATGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACAGGAAGGGTAAGTAGTAGATTTCATGAGAGGAAATGGATGGGG  639

seq1  GTTTGGTCGTAACCATGTTTGTTCAGCTCTTCTGAGAGGTACCTGTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTCGTAACCATGTTTGTTCAGCTCTTCTGAGAGGTACCTGTGAGG  689

seq1  ACTGCGTGCATATATACAAGAATTTTATGAGGGAAAAGCCCATGACAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGTGCATATATACAAGAATTTTATGAGGGAAAAGCCCATGACAGAA  739

seq1  ACTCAAAATTGGCCAAACAGGGAGCGATCTGGATTGGCATACAAGTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAATTGGCCAAACAGGGAGCGATCTGGATTGGCATACAAGTGTCA  789

seq1  CTTGAAGGGAAAGTGAGGAGGAAGGAGAAGGCCGTGTGACATCTAAGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGGAAAGTGAGGAGGAAGGAGAAGGCCGTGTGACATCTAAGGAC  839

seq1  AGCTCAGTCTCCGGAGTTATAAGCCAAAGACAGATGTCAGAGGAGCCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTCTCCGGAGTTATAAGCCAAAGACAGATGTCAGAGGAGCCTGT  889

seq1  GTGTTTCAGCAAGTGCCTCACCCTAGAACTTCTACTGTACCTGTCATCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCAGCAAGTGCCTCACCCTAGAACTTCTACTGTACCTGTCATCAA  939

seq1  TGGAGAGCCCAAGGTGGTTATCTCAGTGCAGATGAGTCAGTGGATTTTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGCCCAAGGTGGTTATCTCAGTGCAGATGAGTCAGTGGATTTTGG  989

seq1  CACATGGTGACCTGAGCCTTGAGCAGACATGGTCCTGAGGATGGGGGTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGACCTGAGCCTTGAGCAGACATGGTCCTGAGGATGGGGGTCT  1039

seq1  GAGATGAGAATTC  1063
      |||||||||||||
seq2  GAGATGAGAATTC  1052