BAC Information

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BAC

Clone NameB6Ng01-020O18
Chromosome8 (Build37)
Map Location 74,921,167 - 75,063,821
singlet/doubletdoublet
Overlap geneEps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7
Upstream gene5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2
Downstream geneLOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large, LOC100039001, LOC666134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020O18.bB6Ng01-020O18.g
ACCDH853583DH853584
length1,000825
definitionDH853583|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O18, 5' end.DH853584|Mus musculus domesticus DNA, BAC clone: B6Ng01-020O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,062,800 - 75,063,821)(74,921,167 - 74,921,989)
sequence
gaattccaggccaaccagggttatactcaaacatagtctcaaaataaata
tatttttaaaaattatttctctcgagctcaggtaggtgtaatgtcttgtg
ttggcagcagcagttaaccggtcagtaccactagatgagcacactggctt
ccatgcacatcaattagcatttgcttgctctttcagtctgaaggttgaca
tttgtcttcaactaaggggccaggaaagactaagcaatctgtgggtctta
aaccagtgctaggtgtccccaaagcaagtgggctcagtgctgcccagccc
actttcctactgcagtacttctgagagctgaggtctatttcaaaggctcc
atcttagagatctgaagtgtttagtttgcaattctgttcacttccctctt
catgcaactttccccttttgcttgaaaaaaaatattaagagaaatttctt
atgtgtcagagtggtgtatgccacattggtgcaagtgcctgaggaggcca
gaagagggcatcagatcccctggagttggagctgtaaggtgatgtgagct
gtggtggagcaggacttgagtccctggagcttctggcatctctccccttc
actttaactctgagttccaaactgttttagatgcaagaacccagttttca
ttttagctttccagtcttcccttggtgtattttttttttttttttttttt
ttttttttttttaggtttttccgagacagggttttctcttgtagtcctgg
ctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaatc
cgcctgtctctgcctcccaagtgctggattaaagcgtgcgccaccaccgc
ccgcgccttggtgtatttttaaatgtagctgggttttcattttttttaag
tctaaagttgggttgctcctgtttcagctgagatcttctagatgaaagct
gcccacctgtagtgataactggatcacttggtactcctctgtgaggagcc

gaattccaaacaagaactttcctccaaagcagtactgcagcccaggtatt
ggatttaaacaactttttcttttttttgagatgaaaccgcatgtatttat
taggaaggaagggtcatgtgcatccagtgtgcatgtaaaaatcggagagc
ttggggaatttagctctcactttctaccatgtgggtctagggattgggtt
caggttgttgttgggcatgacagcaaacaccttcaccagaggaattgtct
tgctgacctactttttctttttagttagttttgctgtgttttttaatcta
tttttttttaatgtatgggtgttctgtctgcacacatacctgcatatcag
aagaaggcatcagattccaccatagatggttatgagccaccatttggttg
ctaggaatttaacacaggaactctctagttaagaattaagtcttgaaggg
ctggcaagatggctcagtgtgtaagagcactgactgctcttctgaaggtc
ctgagttcaaattccagcaaccacatggtggctcacaaccacccttaatg
agctctgacgccctcttctgatgagtctgaagacagctacagtgtacttt
atttataacaataaataaatctttgggcctgagccagtagggccgactgg
agtgaatggggtttgaccagagggagcagaggtcctaaattcaataccca
acaaccacatgatggcatacaaccatctgtacagctacagtatactcata
tatgggccacatgcatgcacacacacacatttctgtgttgctgtgtcatc
atcctgtgttgtgcgtgtgacgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_75062800_75063821
seq2: B6Ng01-020O18.b_46_1045 (reverse)

seq1  GGCTCCTCACCAGAGGGAGTACCAAAGTTGATTCCCAGGTATCACATACA  50
      ||||||||| |||| ||||||||||   ||||  |||| |||||| ||||
seq2  GGCTCCTCA-CAGA-GGAGTACCAA--GTGAT--CCAGTTATCAC-TACA  43

seq1  GGTGAGACCAGCTTTCTCATCTAAGAAGATTCTCAGCTGAAAACAAGAGC  100
      |||| |  ||||||  |||||| |||||| ||||||||| ||||| ||| 
seq2  GGTGGG--CAGCTT--TCATCT-AGAAGA-TCTCAGCTG-AAACAGGAG-  85

seq1  CACACCCAAACTTAAGAACTTTAAAAAAAAATGAAAAACCCAGCTACACT  150
        || || ||||| || ||||  |||||||||| |||||||||||||| |
seq2  --CAACCCAACTTTAG-ACTT--AAAAAAAATG-AAAACCCAGCTACATT  129

seq1  TAAAAATACACCAAGGCGCCGGGCGGTGGTGGCGCACGCCTTTAATCCCA  200
      |||||||||||||||||| ||||||||||||||||||| ||||||| |||
seq2  TAAAAATACACCAAGGCG-CGGGCGGTGGTGGCGCACG-CTTTAAT-CCA  176

seq1  GCACTTGGGAGGCAGAGACAGGCGGATTTCTGAGTTCGAGGCCAGCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGGAGGCAGAGACAGGCGGATTTCTGAGTTCGAGGCCAGCCTGG  226

seq1  TCTACAAAGTGAGTTCCAGGACAGCCAGGACTAC-AGAG-AAACCCTGTC  298
      |||||||||||||||||||||||||||||||||| |||| ||||||||||
seq2  TCTACAAAGTGAGTTCCAGGACAGCCAGGACTACAAGAGAAAACCCTGTC  276

seq1  TCGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAC  348
      ||| |||| |  ||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACAC  326

seq1  CAAGGGAAGACTGGAAAGCTAAAATGAAAACTGGGTTCTTGCATCTAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAAGACTGGAAAGCTAAAATGAAAACTGGGTTCTTGCATCTAAAA  376

seq1  CAGTTTGGAACTCAGAGTTAAAGTGAAGGGGAGAGATGCCAGAAGCTCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGAACTCAGAGTTAAAGTGAAGGGGAGAGATGCCAGAAGCTCCA  426

seq1  GGGACTCAAGTCCTGCTCCACCACAGCTCACATCACCTTACAGCTCCAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCAAGTCCTGCTCCACCACAGCTCACATCACCTTACAGCTCCAAC  476

seq1  TCCAGGGGATCTGATGCCCTCTTCTGGCCTCCTCAGGCACTTGCACCAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGATCTGATGCCCTCTTCTGGCCTCCTCAGGCACTTGCACCAAT  526

seq1  GTGGCATACACCACTCTGACACATAAGAAATTTCTCTTAATATTTTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATACACCACTCTGACACATAAGAAATTTCTCTTAATATTTTTTTT  576

seq1  CAAGCAAAAGGGGAAAGTTGCATGAAGAGGGAAGTGAACAGAATTGCAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAAGGGGAAAGTTGCATGAAGAGGGAAGTGAACAGAATTGCAAA  626

seq1  CTAAACACTTCAGATCTCTAAGATGGAGCCTTTGAAATAGACCTCAGCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACACTTCAGATCTCTAAGATGGAGCCTTTGAAATAGACCTCAGCTC  676

seq1  TCAGAAGTACTGCAGTAGGAAAGTGGGCTGGGCAGCACTGAGCCCACTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTACTGCAGTAGGAAAGTGGGCTGGGCAGCACTGAGCCCACTTG  726

seq1  CTTTGGGGACACCTAGCACTGGTTTAAGACCCACAGATTGCTTAGTCTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGACACCTAGCACTGGTTTAAGACCCACAGATTGCTTAGTCTTT  776

seq1  CCTGGCCCCTTAGTTGAAGACAAATGTCAACCTTCAGACTGAAAGAGCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCCTTAGTTGAAGACAAATGTCAACCTTCAGACTGAAAGAGCAA  826

seq1  GCAAATGCTAATTGATGTGCATGGAAGCCAGTGTGCTCATCTAGTGGTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCTAATTGATGTGCATGGAAGCCAGTGTGCTCATCTAGTGGTAC  876

seq1  TGACCGGTTAACTGCTGCTGCCAACACAAGACATTACACCTACCTGAGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGGTTAACTGCTGCTGCCAACACAAGACATTACACCTACCTGAGCT  926

seq1  CGAGAGAAATAATTTTTAAAAATATATTTATTTTGAGACTATGTTTGAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGAAATAATTTTTAAAAATATATTTATTTTGAGACTATGTTTGAGT  976

seq1  ATAACCCTGGTTGGCCTGGAATTC  1022
      ||||||||||||||||||||||||
seq2  ATAACCCTGGTTGGCCTGGAATTC  1000

seq1: chr8_74921167_74921989
seq2: B6Ng01-020O18.g_66_890

seq1  GAATTCCAAACAAGAACTTTCCTCCAAAGCAGTACTGCAGCCCAGGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACAAGAACTTTCCTCCAAAGCAGTACTGCAGCCCAGGTATT  50

seq1  GGATTTAAACAACTTTTTCTTTTTTTTGAGATGAAACCGCATGTATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAAACAACTTTTTCTTTTTTTTGAGATGAAACCGCATGTATTTAT  100

seq1  TAGGAAGGAAGGGTCATGTGCATCCAGTGTGCATGTAAAAATCGGAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGAAGGGTCATGTGCATCCAGTGTGCATGTAAAAATCGGAGAGC  150

seq1  TTGGGGAATTTAGCTCTCACTTTCTACCATGTGGGTCTAGGGATTGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAATTTAGCTCTCACTTTCTACCATGTGGGTCTAGGGATTGGGTT  200

seq1  CAGGTTGTTGTTGGGCATGACAGCAAACACCTTCACCAGAGGAATTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGTTGTTGGGCATGACAGCAAACACCTTCACCAGAGGAATTGTCT  250

seq1  TGCTGACCTACTTTTTCTTTTTAGTTAGTTTTGCTGTGTTTTTTAATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACCTACTTTTTCTTTTTAGTTAGTTTTGCTGTGTTTTTTAATCTA  300

seq1  TTTTTTTTTAATGTATGGGTGTTCTGTCTGCACACATACCTGCATATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAATGTATGGGTGTTCTGTCTGCACACATACCTGCATATCAG  350

seq1  AAGAAGGCATCAGATTCCACCATAGATGGTTATGAGCCACCATTTGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCATCAGATTCCACCATAGATGGTTATGAGCCACCATTTGGTTG  400

seq1  CTAGGAATTTAACACAGGAACTCTCTAGTTAAGAATTAAGTCTTGAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATTTAACACAGGAACTCTCTAGTTAAGAATTAAGTCTTGAAGGG  450

seq1  CTGGCAAGATGGCTCAGTGTGTAAGAGCACTGACTGCTCTTCTGAAGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAGATGGCTCAGTGTGTAAGAGCACTGACTGCTCTTCTGAAGGTC  500

seq1  CTGAGTTCAAATTCCAGCAACCACATGGTGGCTCACAACCACCCTTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAAATTCCAGCAACCACATGGTGGCTCACAACCACCCTTAATG  550

seq1  AGCTCTGACGCCCTCTTCTGATGAGTCTGAAGACAGCTACAGTGTAC-TT  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGCTCTGACGCCCTCTTCTGATGAGTCTGAAGACAGCTACAGTGTACTTT  600

seq1  ATTTATAACAATAAATAAATCTTTGGGCCTGAGCCAGTAGGGCCGACTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAACAATAAATAAATCTTTGGGCCTGAGCCAGTAGGGCCGACTGG  650

seq1  AGTGAATGGGG-TTGACCAGAGGGAGCAGAGGTCCTAAATTCAATACCCA  698
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGGGGTTTGACCAGAGGGAGCAGAGGTCCTAAATTCAATACCCA  700

seq1  ACAACCACATGAAGGCATACAACCATCTGTACAGCTACAGTATACTCATA  748
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACAACCACATGATGGCATACAACCATCTGTACAGCTACAGTATACTCATA  750

seq1  TATGGGCCACATGCATGCACACACACACATTTCTGTGTTGCTGTGTCATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGCCACATGCATGCACACACACACATTTCTGTGTTGCTGTGTCATC  800

seq1  ATCCTGTGTTGTGCGTGTGTCGGGT  823
      ||||||||||||||||||| |||||
seq2  ATCCTGTGTTGTGCGTGTGACGGGT  825