BAC Information

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BAC

Clone NameB6Ng01-020P03
Chromosome8 (Build37)
Map Location 58,556,494 - 58,603,103
singlet/doubletdoublet
Overlap geneGlra3
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916, Adam29, LOC664812
Downstream geneHpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020P03.bB6Ng01-020P03.g
ACCDH853601DH853602
length1,1671,184
definitionDH853601|Mus musculus domesticus DNA, BAC clone: B6Ng01-020P03, 5' end.DH853602|Mus musculus domesticus DNA, BAC clone: B6Ng01-020P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,601,910 - 58,603,103)(58,556,494 - 58,557,705)
sequence
gaattccatatatttacattaacaaacaccctgacatttgtggttggaca
gtggcttggtggataagaacatttattgctctttcagaagatctgagttc
aaatcccaacattcacatggtgactcacaactgcatataactctggcccc
aggggatccagtgctcttttctggcttccatagacacttcaagcacatgg
tacaaatagactttcacaaacacacatacgtacacagaaaaagtttaatt
agaaactctacacaatgtaatgtaaaattaaaaatataacatctctatgg
tagagaaacagtttattaaccgatttataataaaaatcaatgaataattt
aaaggatgagaataaatggttactgataacaagaatctgttttttttctt
ttgctagtaaaactgcaagtttaaaggtattgattaatatcttttatagt
tatatctttgttcaaagaggtctttttcatataagcttaagagaaaaaag
taatcatttggttcaaaacttaattaggtctatgaaggtagctgctcaat
acatactatattataaaatgtaaaagtgaaagtaaccataattatggata
gaaagggtaagaaagagatcaagattgattcagtaaaatgtgagacagat
ttttaaaattatataggggaggccattccacgcgagataaaaaagcctat
cattgctggaaacatttcagttgtgaggtttataaagcaattggcttttg
atggaaacaattaaaatatgatgattaaaaagcatcttaaagcttccact
gaagttatctttgtctactgatgtaattttgcatagaataactaaaacca
atttttttttagaactctaataaatgtttttgtttttgcagccatatttt
gacttccaaaaactttatggaaaacttattgcatgctatgaaattgtctg
tctttaataaatatatatacttcattgtatctcagtatttatattgtgtg
tgcagtcgcttagtttgaatataatatatacttaattatatcaacatgga
gtttgaatactctttaactagaacacaatagcttctcatgggcatttgta
tatgtgagcatggaagtttcatgatcttgcattattgtttagccaaacga
attcattgcactttctt
gaattctctccatttacttgggctttaggaattgaaataaaatcctcagg
atatgacaatgactttcactcagtgtgccatcctccttgacccaaactat
ttttttgtttttttactttgtaggaatatagaaaatttccccattaatac
ttatctcatttttcaccctgatttaaaatgtgacttttaccttaagtctc
ccttcataggcctgattctgagttctagtctgaactaattctttacttgg
tcgtttaaaatcatttaaagactacagctttatttatctagataaataga
tttagcaggtctacactgttctcccaactggcaccatggtgtttattttt
atcctttgactaactaccagttgaggatcataataaaactttcatttaaa
ttgtgttaaagttacagaacaattttaatagagaagtttcacaatcatgt
gaacttctgcacaagaccattgtgtttcactgtttgcgcatttctatctt
tcaatatttattcaattttttcttttctttataagggtatgttcatgtca
actttaaacaatctgatgatgtttaaagttttcatttactcaagatatta
ctttgaagatatatttgtttaatttcattagagagaagaggtgaatagtc
tatagcagagaaagtaattggagaaaagatcctacgtgggatgagaggtc
atttcctataataataatgggaaataacttttttcacgtgtctaatgaga
actgttcagaggagagatagtatggaaagaattcagtagggattgtctag
agacatcccctgaatcagtatgatggtcagtagattagaggaaatttgat
aaaatggcataggcttcagaaaggttagagggagttgaaaatcaaagtat
ttgtatgaggtttctcttcagttattctgagacttattctcactgcccat
ggctgagcacacagacgaccatataatctacctgtggcatgagatgtcta
cgcgaatagataacaatatttataggtatattttttggtgactaggggaa
aataggatgagacaggataccattttttggttggatactattggttactt
ggaaaggctgacttcagaatggcccataagtcccataacctgagctgaca
attcatctagctctcaaccaaggggtttataata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_58601910_58603103
seq2: B6Ng01-020P03.b_41_1207 (reverse)

seq1  AAGAAAGATGGACAATGAATTCTGTTTTGCTAAACATATATTGCAGGATC  50
      ||||||| ||  |||||||||| |||| |||||||| ||| |||| ||||
seq2  AAGAAAG-TG--CAATGAATTC-GTTTGGCTAAACA-ATAATGCAAGATC  45

seq1  ATGAAAACTTTCCAATTGCTTCCAACATATACAAATGCCCATGGAAGAAG  100
      ||||||   |||||  ||||    |||||||||||||||||||  |||||
seq2  ATGAAA--CTTCCA--TGCT---CACATATACAAATGCCCATG--AGAAG  86

seq1  CTATTGTG-TCTAGTTTAAAGAGGTATTTCAAACT-CATGGTTTGATATA  148
      |||||||| ||||| ||||||| ||| |||||||| ||||  ||||||||
seq2  CTATTGTGTTCTAG-TTAAAGA-GTA-TTCAAACTCCATG--TTGATATA  131

seq1  ATTTAAGTATATATTATATTTCAAAACTAAGCGACCTGCACACACAATAT  198
      | ||||||||||||||||||   ||||||||||| |||||||||||||||
seq2  A-TTAAGTATATATTATATT--CAAACTAAGCGA-CTGCACACACAATAT  177

seq1  AAATTACTGAGATAACAATTGAAGTTATATATTATTTATTAAAGACAGAC  248
      ||| ||||||||| |||| ||||| |||||| ||||||||||||||||||
seq2  AAA-TACTGAGAT-ACAA-TGAAG-TATATA-TATTTATTAAAGACAGAC  222

seq1  AATTTCATAGCATGCAATAAGTTTTCCATAAAGTTTTTTGGAAGTCAAAA  298
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATTTCATAGCATGCAATAAGTTTTCCATAAAG-TTTTTGGAAGTCAAAA  271

seq1  TATGGCTGCAAAAACAAAAACATTTATTAGAGTTCTAAAAAAAAATTGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTGCAAAAACAAAAACATTTATTAGAGTTCTAAAAAAAAATTGGT  321

seq1  TTTAGTTATTCTATGCAAAATTACATCAGTAGACAAAGATAACTTCAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTATTCTATGCAAAATTACATCAGTAGACAAAGATAACTTCAGTG  371

seq1  GAAGCTTTAAGATGCTTTTTAATCATCATATTTTAATTGTTTCCATCAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTAAGATGCTTTTTAATCATCATATTTTAATTGTTTCCATCAAA  421

seq1  AGCCAATTGCTTTATAAACCTCACAACTGAAATGTTTCCAGCAATGATAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATTGCTTTATAAACCTCACAACTGAAATGTTTCCAGCAATGATAG  471

seq1  GCTTTTTTATCTCGCGTGGAATGGCCTCCCCTATATAATTTTAAAAATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTATCTCGCGTGGAATGGCCTCCCCTATATAATTTTAAAAATCT  521

seq1  GTCTCACATTTTACTGAATCAATCTTGATCTCTTTCTTACCCTTTCTATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACATTTTACTGAATCAATCTTGATCTCTTTCTTACCCTTTCTATC  571

seq1  CATAATTATGGTTACTTTCACTTTTACATTTTATAATATAGTATGTATTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTATGGTTACTTTCACTTTTACATTTTATAATATAGTATGTATTG  621

seq1  AGCAGCTACCTTCATAGACCTAATTAAGTTTTGAACCAAATGATTACTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTACCTTCATAGACCTAATTAAGTTTTGAACCAAATGATTACTTT  671

seq1  TTTCTCTTAAGCTTATATGAAAAAGACCTCTTTGAACAAAGATATAACTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTAAGCTTATATGAAAAAGACCTCTTTGAACAAAGATATAACTA  721

seq1  TAAAAGATATTAATCAATACCTTTAAACTTGCAGTTTTACTAGCAAAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGATATTAATCAATACCTTTAAACTTGCAGTTTTACTAGCAAAAGA  771

seq1  AAAAAAACAGATTCTTGTTATCAGTAACCATTTATTCTCATCCTTTAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAGATTCTTGTTATCAGTAACCATTTATTCTCATCCTTTAAAT  821

seq1  TATTCATTGATTTTTATTATAAATCGGTTAATAAACTGTTTCTCTACCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTGATTTTTATTATAAATCGGTTAATAAACTGTTTCTCTACCAT  871

seq1  AGAGATGTTATATTTTTAATTTTACATTACATTGTGTAGAGTTTCTAATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTTATATTTTTAATTTTACATTACATTGTGTAGAGTTTCTAATT  921

seq1  AAACTTTTTCTGTGTACGTATGTGTGTTTGTGAAAGTCTATTTGTACCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTTCTGTGTACGTATGTGTGTTTGTGAAAGTCTATTTGTACCAT  971

seq1  GTGCTTGAAGTGTCTATGGAAGCCAGAAAAGAGCACTGGATCCCCTGGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGAAGTGTCTATGGAAGCCAGAAAAGAGCACTGGATCCCCTGGGG  1021

seq1  CCAGAGTTATATGCAGTTGTGAGTCACCATGTGAATGTTGGGATTTGAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTATATGCAGTTGTGAGTCACCATGTGAATGTTGGGATTTGAAC  1071

seq1  TCAGATCTTCTGAAAGAGCAATAAATGTTCTTATCCACCAAGCCACTGTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTTCTGAAAGAGCAATAAATGTTCTTATCCACCAAGCCACTGTC  1121

seq1  CAACCACAAATGTCAGGGTGTTTGTTAATGTAAATATATGGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACAAATGTCAGGGTGTTTGTTAATGTAAATATATGGAATTC  1167

seq1: chr8_58556494_58557705
seq2: B6Ng01-020P03.g_66_1249

seq1  GAATTCTCTCCATTTACTTGGGCTTTAGGAATTGAAATAAAATCCTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCATTTACTTGGGCTTTAGGAATTGAAATAAAATCCTCAGG  50

seq1  ATATGACAATGACTTTCACTCAGTGTGCCATCCTCCTTGACCCAAACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAATGACTTTCACTCAGTGTGCCATCCTCCTTGACCCAAACTAT  100

seq1  TTTTTTGTTTTTTTACTTTGTAGGAATATAGAAAATTTCCCCATTAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTTTACTTTGTAGGAATATAGAAAATTTCCCCATTAATAC  150

seq1  TTATCTCATTTTTCACCCTGATTTAAAATGTGACTTTTACCTTAAGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCATTTTTCACCCTGATTTAAAATGTGACTTTTACCTTAAGTCTC  200

seq1  CCTTCATAGGCCTGATTCTGAGTTCTAGTCTGAACTAATTCTTTACTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATAGGCCTGATTCTGAGTTCTAGTCTGAACTAATTCTTTACTTGG  250

seq1  TCGTTTAAAATCATTTAAAGACTACAGCTTTATTTATCTAGATAAATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTAAAATCATTTAAAGACTACAGCTTTATTTATCTAGATAAATAGA  300

seq1  TTTAGCAGGTCTACACTGTTCTCCCAACTGGCACCATGGTGTTTATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGGTCTACACTGTTCTCCCAACTGGCACCATGGTGTTTATTTTT  350

seq1  ATCCTTTGACTAACTACCAGTTGAGGATCATAATAAAACTTTCATTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTGACTAACTACCAGTTGAGGATCATAATAAAACTTTCATTTAAA  400

seq1  TTGTGTTAAAGTTACAGAACAATTTTAATAGAGAAGTTTCACAATCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTAAAGTTACAGAACAATTTTAATAGAGAAGTTTCACAATCATGT  450

seq1  GAACTTCTGCACAAGACCATTGTGTTTCACTGTTTGCGCATTTCTATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTGCACAAGACCATTGTGTTTCACTGTTTGCGCATTTCTATCTT  500

seq1  TCAATATTTATTCAATTTTTTCTTTTCTTTATAAGGGTATGTTCATGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTTATTCAATTTTTTCTTTTCTTTATAAGGGTATGTTCATGTCA  550

seq1  ACTTTAAACAATCTGATGATGTTTAAAGTTTTCATTTACTCAAGATATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAACAATCTGATGATGTTTAAAGTTTTCATTTACTCAAGATATTA  600

seq1  CTTTGAAGATATATTTGTTTAATTTCATTAGAGAGAAGAGGTGAATAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGATATATTTGTTTAATTTCATTAGAGAGAAGAGGTGAATAGTC  650

seq1  TATAGCAGAGAAAGTAATTGGAGAAAAGATCCTACGTGGGATGAGAGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGAGAAAGTAATTGGAGAAAAGATCCTACGTGGGATGAGAGGTC  700

seq1  ATTTCCTATAATAATAATGGGAAATAACTTTTTTCAGGTGTCTAATGAGA  750
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTTCCTATAATAATAATGGGAAATAACTTTTTTCACGTGTCTAATGAGA  750

seq1  ACTGTTCAGAGGAGAGATAGTATGGAAAGAATTCAGTAGGGATTGTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCAGAGGAGAGATAGTATGGAAAGAATTCAGTAGGGATTGTCTAG  800

seq1  AGACATCCCCTGAATCAGTATGATGGTCAGTAGATTAGAGGAAATTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCCCCTGAATCAGTATGATGGTCAGTAGATTAGAGGAAATTTGAT  850

seq1  AAAATGGCATAGGCTTCAGAAAGGTTAGAGGGAGTTGAAAATCAAAGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCATAGGCTTCAGAAAGGTTAGAGGGAGTTGAAAATCAAAGTAT  900

seq1  TTGTATGAGGTTTCTCTTCAGTTATTCTGAGACTTATTCTCACTGCCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAGGTTTCTCTTCAGTTATTCTGAGACTTATTCTCACTGCCCAT  950

seq1  TGGCCTGAGCCAACACAGACGACCATATAATCTACCTGTGGCATGAGATG  1000
        | ||||||  ||||||||||||||||||||||||||||||||||||||
seq2  --GGCTGAGC--ACACAGACGACCATATAATCTACCTGTGGCATGAGATG  996

seq1  TCTACGCGAATAGATAACAATATTTATAGGTATATTTTTTGGTTGACTAA  1050
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  TCTACGCGAATAGATAACAATATTTATAGGTATATTTTTTGG-TGACTA-  1044

seq1  GTGGAAAAATAGACAGAGACAAGATAACACATTTTTTTGTTTTGATTTAC  1100
        || |||||||   |||||| |||| ||   ||||||| || ||  |||
seq2  -GGGGAAAATAGGATGAGACAGGATACCA---TTTTTTGGTTGGA--TAC  1088

seq1  TATTTTGTGTTACTTGGAAATAGTCTAGACTTTCTAGATGGTCCCATAGA  1150
      ||||    |||||||||||  || || |||||   |||  | |||||| |
seq2  TATT---GGTTACTTGGAA--AGGCT-GACTT--CAGAATGGCCCATA-A  1129

seq1  GTCCCATAAACTCAGAGCTAGCAATTTCAATTCTTAGCTCATCAACCAAG  1200
      ||||||||| ||  |||||  ||| ||||  || |||||| |||||||||
seq2  GTCCCATAACCT--GAGCTGACAA-TTCA--TC-TAGCTC-TCAACCAAG  1172

seq1  GGGTTTAAAATA  1212
      ||||||| ||||
seq2  GGGTTTATAATA  1184