BAC Information

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BAC

Clone NameB6Ng01-021M09
Chromosome8 (Build37)
Map Location 107,230,048 - 107,231,162
singlet/doubletsinglet
Overlap geneLOC382052
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550
Downstream geneLOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021M09.bB6Ng01-021M09.g
ACCDH854185DH854186
length7671,092
definitionDH854185|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M09, 5' end.DH854186|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaatagaggaaattcaaacggccaagaaacacttaagcaatct
tcaacatccttagctatcagggaaatgcaaatcagaagaactttgagatt
tcatcttacacctgtggcaatggcaaagattaacaaaacaaatgacagct
catgctggggaggatgtggagtaagagctgctgataggagtgaaccctgt
accagccttattaaatcagcgtggcggttcctaggggagatggaaattaa
tctacatcaagatccagctatactactctagggcatatacccaaaggtga
ttcattctgccacagagaccttacttgagcaatcatggttgctgctactc
tatttataatgaatttgcatgaaattggaaccaacccagatgtccctcaa
tggatgaatggataaagaaaagtggtacatttgcacaatggagtattact
cagctgtaaagaagtatggcatcctgaaatttgcaagcaactagatggaa
caagaatcaatcatcctagtgaaatatgcaaccttcatccagaaagtcag
gaattgtatggatttgtttatatgtagaaattagctgtgtggttaatgat
aagcaaactatgataggtagacccacagagataggaatagagcaagagac
tagagggaatggagtgatctcattaggaaagggcaatgtaatagataaat
atggatggaagcagagaaggaattggaggttaaagtgatgagggtaagca
ggggtgttgaaggaagg
gaattcagaaaatctgaaaattaagatgaacaggtctcctgtctctatgt
ctgaagactgcctatatctcagcatctatacaccagcccatgcccatgag
gactctaacctgcctgtgagtttaagccatggtcaactgggtaaaaggag
aggatttctttctcagtcagattggaaaggaaacaataaactgagcctct
cactggtgtggactcagattagagtattcccctataggtccaagaagggc
ttttcagacatagtaggcagctgaacccgggatgtggggcacaaagaatt
tgagttctgagatgtcagaggcttagatcgttgatctactagggactcat
tctaccaacttgagcccacagccccattcaggcactcaagggcagaacac
caaggacactccaattcctagctttggaatatctgttgcaccaatgagat
ttgatgatccttttgaataatattctggaagtgacattcataaagacacc
tctttttatcccacttttgaaggttctgagatggtggcactactttgtat
ctagagctacaaatccctaataagattccccagtgaggagagaagggctg
gaaaaattctgattggactagagtaatccatctgtggcccaggttcagaa
ttctgtctgtatgtgtacctgcacagagacaaaagcatttgactatctaa
taggtagtccagtaaagcttgggatgcaaaggagtctttgggcattatcc
tgatttctccaggtgatggtgtggatccatggtggtgggctatgttgggg
catggcttccacgtatgatgggtccacgctggcagccactgaagatgtgg
tggtggtcactatccagtaccgcctgggtatcctgggcttcttcagtgag
cctggggctggataaggcaatgggggctttatataaacataaatagacag
ctctgtgatccatgtcccttcactctcacacagaaatgacatgctgatgc
aactgggattcttgaccaagtgctgcctacgctggttcagcgacatgccc
actttggagcatctgacgggtcactattttgcgagtctgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107230048_107231162
seq2: B6Ng01-021M09.g_64_1155 (reverse)

seq1  CTGCAGACTCGCCAAAAATAGTGACCCGGTCAGGATTGCCTCCAAAGTGG  50
      ||||||||||||  ||||||||||||| |||| |||   |||||||||||
seq2  CTGCAGACTCGC--AAAATAGTGACCC-GTCA-GAT--GCTCCAAAGTGG  44

seq1  GCGATGTTCTGCTGGACCCAGCGTAGGGCAGCCACTTGGTCCAGGTATCC  100
      || ||||   ||| || |||||||| ||||| ||||||||| ||  |  |
seq2  GC-ATGT--CGCT-GAACCAGCGTA-GGCAG-CACTTGGTCAAG--AATC  86

seq1  CCAGTTGCCTCTGGCATGGTCATCTCCTGTGCTGAGAAGTGGAAGGGACA  150
      |||||||| ||  |||| ||||| | ||||| |||| ||| |||||||||
seq2  CCAGTTGCATC-AGCAT-GTCAT-TTCTGTG-TGAG-AGT-GAAGGGACA  130

seq1  TGGATCACAGAGCTGTCTTATTTATGTTTAATATAAAGCCCCCATTGCCT  200
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TGGATCACAGAGCTGTC-TATTTATGTTT-ATATAAAGCCCCCATTGCCT  178

seq1  TATCCAGCCCCAGGCTCACCTGAAGAAGCCCAGGATACCCAGGCGGTACT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATCCAGCCCCAGGCTCA-CTGAAGAAGCCCAGGATACCCAGGCGGTACT  227

seq1  GGATAGTGACCACCACCACATCTTCAGTGGCTGCCAGCGTGGACCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTGACCACCACCACATCTTCAGTGGCTGCCAGCGTGGACCCATCA  277

seq1  TACGTGGAAGCCATGCCCCAACATAGCCCACCACCATGGATCCACACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGGAAGCCATGCCCCAACATAGCCCACCACCATGGATCCACACCAT  327

seq1  CACCTGGAGAAATCAGGATAATGCCCAAAGACTCCTTTGCATCCCAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGAGAAATCAGGATAATGCCCAAAGACTCCTTTGCATCCCAAGCT  377

seq1  TTACTGGACTACCTATTAGATAGTCAAATGCTTTTGTCTCTGTGCAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGACTACCTATTAGATAGTCAAATGCTTTTGTCTCTGTGCAGGTA  427

seq1  CACATACAGACAGAATTCTGAACCTGGGCCACAGATGGATTACTCTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACAGACAGAATTCTGAACCTGGGCCACAGATGGATTACTCTAGTC  477

seq1  CAATCAGAATTTTTCCAGCCCTTCTCTCCTCACTGGGGAATCTTATTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGAATTTTTCCAGCCCTTCTCTCCTCACTGGGGAATCTTATTAGG  527

seq1  GATTTGTAGCTCTAGATACAAAGTAGTGCCACCATCTCAGAACCTTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTAGCTCTAGATACAAAGTAGTGCCACCATCTCAGAACCTTCAAA  577

seq1  AGTGGGATAAAAAGAGGTGTCTTTATGAATGTCACTTCCAGAATATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGATAAAAAGAGGTGTCTTTATGAATGTCACTTCCAGAATATTATT  627

seq1  CAAAAGGATCATCAAATCTCATTGGTGCAACAGATATTCCAAAGCTAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGATCATCAAATCTCATTGGTGCAACAGATATTCCAAAGCTAGGA  677

seq1  ATTGGAGTGTCCTTGGTGTTCTGCCCTTGAGTGCCTGAATGGGGCTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGTGTCCTTGGTGTTCTGCCCTTGAGTGCCTGAATGGGGCTGTGG  727

seq1  GCTCAAGTTGGTAGAATGAGTCCCTAGTAGATCAACGATCTAAGCCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGTTGGTAGAATGAGTCCCTAGTAGATCAACGATCTAAGCCTCTG  777

seq1  ACATCTCAGAACTCAAATTCTTTGTGCCCCACATCCCGGGTTCAGCTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCAGAACTCAAATTCTTTGTGCCCCACATCCCGGGTTCAGCTGCC  827

seq1  TACTATGTCTGAAAAGCCCTTCTTGGACCTATAGGGGAATACTCTAATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTCTGAAAAGCCCTTCTTGGACCTATAGGGGAATACTCTAATCT  877

seq1  GAGTCCACACCAGTGAGAGGCTCAGTTTATTGTTTCCTTTCCAATCTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCACACCAGTGAGAGGCTCAGTTTATTGTTTCCTTTCCAATCTGAC  927

seq1  TGAGAAAGAAATCCTCTCCTTTTACCCAGTTGACCATGGCTTAAACTCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGAAATCCTCTCCTTTTACCCAGTTGACCATGGCTTAAACTCAC  977

seq1  AGGCAGGTTAGAGTCCTCATGGGCATGGGCTGGTGTATAGATGCTGAGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTTAGAGTCCTCATGGGCATGGGCTGGTGTATAGATGCTGAGAT  1027

seq1  ATAGGCAGTCTTCAGACATAGAGACAGGAGACCTGTTCATCTTAATTTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAGTCTTCAGACATAGAGACAGGAGACCTGTTCATCTTAATTTTC  1077

seq1  AGATTTTCTGAATTC  1115
      |||||||||||||||
seq2  AGATTTTCTGAATTC  1092