BAC Information

Click to search

BAC

Clone NameB6Ng01-022K18
Chromosome8 (Build37)
Map Location 96,560,466 - 96,677,544
singlet/doubletdoublet
Overlap geneNudt21, Ogfod1, Bbs2, Mt4, Mt3
Upstream geneEG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7, Gnao1, Amfr
Downstream geneMt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022K18.bB6Ng01-022K18.g
ACCDH854814DH854815
length885501
definitionDH854814|Mus musculus domesticus DNA, BAC clone: B6Ng01-022K18, 5' end.DH854815|Mus musculus domesticus DNA, BAC clone: B6Ng01-022K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,560,466 - 96,561,347)(96,677,038 - 96,677,544)
sequence
gaattcaaagcaaacgcaggttctaaccatccgctgaatgaagggaaagg
gggaaacgaacctcgcttttaaaataggaaaactgccaagtcggggtcga
gaaacaggtctaggaaagaaagcgcgcatcccggaagggacaacccgcat
ccggcgtgagggaggagcgcgcactgggagagcatcaacggccgaggccg
cgccgcacttacagattaatggtgcgctccagggtgaggggcttggtctg
ctggatgtacttgttgccgaactggttgaccccccggggccagcccgtct
gcgagcgattgggcggcaccacagacatgctgaacagctccgacgccggg
gacgtgcagaaagcgggggcccggggagacgtccgcggggcgggcagcgg
ttatctgcgtcccgctcagcagccaccacccgccattaacagtcgagagc
aagaggcgcggaacacacgccggaagtgaatacgctccggaggcaggaag
ttgggaggcaggccactgcgaccatttgaccaattgctggcggcgtgacg
caatatgttgatctcccattggttatttttgtggagatcccgcctccctg
tgctttactgcctttccattgggtaatgctggtgaaataaggaaagaggg
tttttcgggaactgtagttttctggagggaagtagcgtcctgacttcctt
ggcgtgggtctgtgcaccgtgagaagatgaacgggaagcggccggcggat
cctggcccagcgcggccaatgaagaagggaaagaagcagtatcggcagag
tttttcggacgctgtcactgaagaaatcctgaggaagcagttggctgatg
cctgtagctgccggacaccgttcagccatggttat
cctgggaatgctgggctcaggcctgggccagagggagagttaggtctggt
ggaaaaggcaagccaatgtaaaaggtactgagacggaattgcagcaggga
aggggcagggataatgtcgaggccagcacatccgtgagatctatgcatag
ccacactcgagaagaagaaagcgctggtcctacctctacacctcacccca
agcatattacatcgctgaaatctggaaagagcagattgaggagaccccac
aaagcctaagaagggccaaggcactacaactttaaagctgacccccccat
tcttccttggggatcctcgggctctggaaaaatcgaagagtggggctcag
ctttcaaagcggctatcttaatagcttccggaaattcatcaaaatatccc
ccttacattgggttaattaacattggttgtaatagcctcggtatctgaag
gtctgcagcaggaagctttgcttcatagtgtctggtgggggtggggtggg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_96560466_96561347
seq2: B6Ng01-022K18.b_43_927

seq1  GAATTCAAAGCAAACGCAGGTTCTAACCAT-GGCTGAATGAAGGGAAAGG  49
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  GAATTCAAAGCAAACGCAGGTTCTAACCATCCGCTGAATGAAGGGAAAGG  50

seq1  GGGAAACGAACCTCGCTTTTAAAATAGGAAAACTGCCAAGTCGGGGTCGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACGAACCTCGCTTTTAAAATAGGAAAACTGCCAAGTCGGGGTCGA  100

seq1  GAAACAGGTCTAGGAAAGAAAGCGCGCATCCCGGAAGGGACAACCCGCAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTCTAGGAAAGAAAGCGCGCATCCCGGAAGGGACAACCCGCAT  150

seq1  CCGGCGTGAGGGAGGAGCGCGCACTGGGAGAGCATCAACGGCCGAGGCCG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCGTGAGGGAGGAGCGCGCACTGGGAGAGCATCAACGGCCGAGGCCG  200

seq1  CGCCGCACTTACAGATTAATGGTGCGCTCCAGGGTGAGGGGCTTGGTCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCACTTACAGATTAATGGTGCGCTCCAGGGTGAGGGGCTTGGTCTG  250

seq1  CTGGATGTACTTGTTGCCGAACTGGTTGACCCCCCGGGGCCAGCCCGTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTACTTGTTGCCGAACTGGTTGACCCCCCGGGGCCAGCCCGTCT  300

seq1  GCGAGCGATTGGGCGGCACCACAGACATGCTGAACAGCTCCGACGCCGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCGATTGGGCGGCACCACAGACATGCTGAACAGCTCCGACGCCGGG  350

seq1  GACGTGCAGAAAGCGGGGGCCCGGGGAGACGTCCGCGGGGCGGGCAGCGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGCAGAAAGCGGGGGCCCGGGGAGACGTCCGCGGGGCGGGCAGCGG  400

seq1  TTATCTGCGTCCCGCTCAGCAGCCACCACCCGCCATTAACAGTCGAGAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGCGTCCCGCTCAGCAGCCACCACCCGCCATTAACAGTCGAGAGC  450

seq1  AAGAGGCGCGGAACACACGCCGGAAGTGAATACGCTCCGGAGGCAGGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCGCGGAACACACGCCGGAAGTGAATACGCTCCGGAGGCAGGAAG  500

seq1  TTGGGAGGCAGGCCACTGCGACCATTTGACCAATTGCTGGCGGCGTGACG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGCAGGCCACTGCGACCATTTGACCAATTGCTGGCGGCGTGACG  550

seq1  CAATATGTTGATCTCCCATTGGTTATTTTTGTGGAGATCCCGCCTCCCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGTTGATCTCCCATTGGTTATTTTTGTGGAGATCCCGCCTCCCTG  600

seq1  TGCTTTACTGCCTTTCCATTGGGTAATGCTGGTGAAATAAGGAAAGAGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTACTGCCTTTCCATTGGGTAATGCTGGTGAAATAAGGAAAGAGGG  650

seq1  -TTTTCGGGAACTGTAG-TTTCTGGAGGGAAGTAGCGTCCTGACTTCCTT  697
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTTCGGGAACTGTAGTTTTCTGGAGGGAAGTAGCGTCCTGACTTCCTT  700

seq1  GGCGTGGGTCTGTGCACCGTGAGAAGATGAACGGGAAGCGGCCGGCGGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGGTCTGTGCACCGTGAGAAGATGAACGGGAAGCGGCCGGCGGAT  750

seq1  CCTGGCCCAGCGCGGCCAATGAAGAAGGGAAAGAAGCAGGTATCGGCAGA  797
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCTGGCCCAGCGCGGCCAATGAAGAAGGGAAAGAAGCA-GTATCGGCAGA  799

seq1  G-TTTTCGGACGCTGTCACTGAAGAAATCCTGAGGAAGCAGGTGGCTGAG  846
      | ||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  GTTTTTCGGACGCTGTCACTGAAGAAATCCTGAGGAAGCAGTTGGCTGAT  849

seq1  GCCTGGAGCTGCCGGACACCGTTCAGCCATGGTAAT  882
      ||||| ||||||||||||||||||||||||||| ||
seq2  GCCTGTAGCTGCCGGACACCGTTCAGCCATGGTTAT  885

seq1: chr8_96677038_96677544
seq2: B6Ng01-022K18.g_70_576 (reverse)

seq1  GCCCACCCCACCCCCACCAGACACTATGAAGCAAAGCTTCCTGCTGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCCCACCCCCACCAGACACTATGAAGCAAAGCTTCCTGCTGCAGA  50

seq1  CCTTCAGATACCGAGGCTATTACAACCAATGTTAATTAACCCAATGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGATACCGAGGCTATTACAACCAATGTTAATTAACCCAATGTAAG  100

seq1  GGGGATATTTTGATGAATTTCCGGAAGCTATTAAGATAGCCGCTTTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATATTTTGATGAATTTCCGGAAGCTATTAAGATAGCCGCTTTGAAA  150

seq1  GCTGAGCCCCACTCTTCGATTTTTCCAGAGCCCGAGGATCCCCAAGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCCCCACTCTTCGATTTTTCCAGAGCCCGAGGATCCCCAAGGAAG  200

seq1  AATGGGGGGGTCAGCTTTAAAGTTGTAGTGCCTTGGCCCTTCTTAGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGGGTCAGCTTTAAAGTTGTAGTGCCTTGGCCCTTCTTAGGCTT  250

seq1  TGTGGGGTCTCCTCAATCTGCTCTTTCCAGATTTCAGCGATGTAATATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTCTCCTCAATCTGCTCTTTCCAGATTTCAGCGATGTAATATGC  300

seq1  TTGGGGTGAGGTGTAGAGGTAGGACCAGCGCTTTCTTCTTCTCGAGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGAGGTGTAGAGGTAGGACCAGCGCTTTCTTCTTCTCGAGTGTG  350

seq1  GCTATGCATAGATCTCACGGATGTGCTGGCCTCGACATTATCCCTGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCATAGATCTCACGGATGTGCTGGCCTCGACATTATCCCTGCCCC  400

seq1  TTCCCTGCTGCAATTCCGTCTCAGTACCTTTTACATTGGCTTGCCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCTGCAATTCCGTCTCAGTACCTTTTACATTGGCTTGCCTTTTC  450

seq1  CACCAGACCTAACTCTCCCTCTGGCCCAGGCCTGAGCCCAGCATTCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGACCTAACTCTCCCTCTGGCCCAGGCCTGAGCCCAGCATTCCCAG  500

seq1  GGAATTC  507
      |||||||
seq2  GGAATTC  507