BAC Information

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BAC

Clone NameB6Ng01-024G04
Chromosome8 (Build37)
Map Location 79,902,150 - 80,028,892
singlet/doubletdoublet
Overlap geneArhgap10
Upstream geneLOC666226, LOC100039211, LOC384847, Nr3c2
Downstream geneLOC100039235, AI931714, Tmem34, Ednra, EG622803, Ttc29, Pou4f2, LOC100039422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024G04.bB6Ng01-024G04.g
ACCDH856037DH856038
length1,0951,002
definitionDH856037|Mus musculus domesticus DNA, BAC clone: B6Ng01-024G04, 5' end.DH856038|Mus musculus domesticus DNA, BAC clone: B6Ng01-024G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,902,150 - 79,903,265)(80,027,876 - 80,028,892)
sequence
gaattctgagcaaagctgtgagagttccaaccttggactctgagaatgca
tttcaaagtatgagccaagcaggagccttgggaggacagaagcagaatgc
cttccaaggtctatgtattattggaggactggcatctaggaagcaaggct
tagcaggaggttcctaggccagccctactgaggcctggaagaggtctgtg
gaagtcttccacgttgttttctttgctttctagccatatgctgagtggtt
ttacatcactacacagtccatgtgtgctgtgctacttcaccataggtcca
aagctaccagatcaactgatcacagactggtaccttcaaaactgagagcc
aaaaagatttacttatttgtttggttacttatttatagagggtggaccct
ccaggcctccacgaataaggatgctctagaggacaaaggagaatgctaag
ccatcatctctctcagaaacacatgcagagcagttgtgcttcaccccaag
agtcaacaccacagctgcacagggaagctctcctccaactaggcaaggaa
tgaaggcttgggtaaaatggccccaaaacgctggcactcctcgtcattga
ggacgagtgagctaccccccccccatgggcttacaggaagtagatgtgag
agagtacagaagggaggggctacagcgaagcacagggtatggatgagcaa
gaactaggcagatgcccctcaactcccctgggctcatctgcatggcatct
cagtttgattctctcagcttgacacactgagattcgctttcccataagtc
cctacctgattcttacaatctccaaagcccctgggacccagtgaataggt
ttcacacgttactcacacagaaaccatgttgttgttcctgtgcctgacag
cctccttctaactctgcactgctctactcctctcgggttcactgcctaag
catacaccaacatggtcccaacacacttggaaccacagtcaaaaacgcag
caagaagtgtacattgtctctgtggcttagtctctttgcgtcccaagcct
tgcacatccgttgagtctcaagccctctgaccaaataactccaat
gaattccttgtcaccggagagcagagctgtgtgaaaggactagggggcat
ggccttgttggaggaactgtgccactggggatgggctttcgatgtcaaag
gcccatgccaagcccagtttctttctgctgcctgaagatcagagtgtaaa
actctctgttccaaggccatgctggccagtgtgccatgctcgcactgtga
ccatgctggccagtgtgccatgctcgcactgtgaccatgctggccagtgt
gccatgctcgcactgtgaccatgctgaccagtgtgccatgctcgcactgt
gaccatcctggccagtgtgccattcttgctgtgtgaccatgctggccagt
gtgccatgctcgccccgtgatgatggatcctctgaaatggtaagccagcc
cccagttaaacgctttctcttgtcagtgttgtcctgctcctggtgactaa
cacagttgctgagagtcacagggaagacagtcatcctcagatgatctgaa
ttactgtctacaccgttatgtccatcacaaaagaaggagctgatatttgc
ctttaacagaataaggtttcaaaagtaatgttattactaatgatctaggg
ggtcacacagggccactgacaacacgcggctggcttttgctgggtagttt
actaagacctgtgttagtattctcctaaaaaagacttactgaaggatttg
ttttgctccccccccccccccagactgtacagtgtggctcagttggtaga
gtgcttgcctaagctgtgggaaccaccgcacaatggtggtggtgtgacac
catgccttttagaactgccagcagctgaggtaccaggaaggaggagggat
gaacaaaattgccacccaactatcccatcaaggaggaggggctcccaagg
tcccatccttccagacgatataagatagatataaggtcgctggagacagg
gcagatagctttctggggcagcattacagtcattaacagttgtcggaggg
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_79902150_79903265
seq2: B6Ng01-024G04.b_39_1133

seq1  GAATTCTGAGCAAAGCTGTGAGAGTTCCAACCTTGGACTCTGAGAATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCAAAGCTGTGAGAGTTCCAACCTTGGACTCTGAGAATGCA  50

seq1  TTTCAAAGTATGAGCCAAGCAGGAGCCTTGGGAGGACAGAAGCAGAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGTATGAGCCAAGCAGGAGCCTTGGGAGGACAGAAGCAGAATGC  100

seq1  CTTCCAAGGTCTATGTATTATTGGAGGACTGGCATCTAGGAAGCAAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGGTCTATGTATTATTGGAGGACTGGCATCTAGGAAGCAAGGCT  150

seq1  TAGCAGGAGGTTCCTAGGCCAGCCCTACTGAGGCCTGGAAGAGGTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAGGTTCCTAGGCCAGCCCTACTGAGGCCTGGAAGAGGTCTGTG  200

seq1  GAAGTCTTCCACGTTGTTTTCTTTGCTTTCTAGCCATATGCTGAGTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTCCACGTTGTTTTCTTTGCTTTCTAGCCATATGCTGAGTGGTT  250

seq1  TTACATCACTACACAGTCCATGTGTGCTGTGCTACTTCACCATAGGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCACTACACAGTCCATGTGTGCTGTGCTACTTCACCATAGGTCCA  300

seq1  AAGCTACCAGATCAACTGATCACAGACTGGTACCTTCAAAACTGAGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACCAGATCAACTGATCACAGACTGGTACCTTCAAAACTGAGAGCC  350

seq1  AAAAAGATTTACTTATTTGTTTGGTTACTTATTTATAGAGGGTGGACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATTTACTTATTTGTTTGGTTACTTATTTATAGAGGGTGGACCCT  400

seq1  CCAGGCCTCCACGAATAAGGATGCTCTAGAGGACAAAGGAGAATGCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTCCACGAATAAGGATGCTCTAGAGGACAAAGGAGAATGCTAAG  450

seq1  CCATCATCTCTCTCAGAAACACATGCAGAGCAGTTGTGCTTCACCCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCTCTCTCAGAAACACATGCAGAGCAGTTGTGCTTCACCCCAAG  500

seq1  AGTCAACACCACAGCTGCACAGGGAAGCTCTCCTCCAACTAGGCAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACACCACAGCTGCACAGGGAAGCTCTCCTCCAACTAGGCAAGGAA  550

seq1  TGAAGGCTTGGGTAAAATGGCCCCAAAACGCTGGCACTCCTCGTCATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTTGGGTAAAATGGCCCCAAAACGCTGGCACTCCTCGTCATTGA  600

seq1  GGACGAGTGAGCTACCCCCCCCCCATGGGCTTACAGGAAGTAGATGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGAGTGAGCTACCCCCCCCCCATGGGCTTACAGGAAGTAGATGTGAG  650

seq1  AGAGTACAGAAGGGAGGGGCTACAGCGAAGCACAGGGTATGGATGAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACAGAAGGGAGGGGCTACAGCGAAGCACAGGGTATGGATGAGCAA  700

seq1  GAACTAGGCAGATGCCCCTCAACTCCCCTGGGCTCATCTGCATGGCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGGCAGATGCCCCTCAACTCCCCTGGGCTCATCTGCATGGCATCT  750

seq1  CAGTTTGATTCTCTCAGCTTGACACACTGAGATTCGCTTTCCCATAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGATTCTCTCAGCTTGACACACTGAGATTCGCTTTCCCATAAGTC  800

seq1  CCTACCTGATTCTTACAATCTCCAAAGCCCCTGGGACCCAGTGAATAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTGATTCTTACAATCTCCAAAGCCCCTGGGACCCAGTGAATAGGT  850

seq1  TTCACACATCACTCACACAGAAACCATGGTTGTTGTTCCTGTGCCCTGAC  900
      ||||||| | ||||||||||||||||| ||||||||||||||| ||||||
seq2  TTCACACGTTACTCACACAGAAACCAT-GTTGTTGTTCCTGTG-CCTGAC  898

seq1  AGCCTCC-TCTAACTCTGCAGCTGCTCTACTCCTCTCGGGTTTCACTGCC  949
      ||||||| |||||||||||| ||||||||||||||||||| |||||||||
seq2  AGCCTCCTTCTAACTCTGCA-CTGCTCTACTCCTCTCGGG-TTCACTGCC  946

seq1  TAAAGCAGACACCAACAATGGTCCCCAACACACTTGGAACCCACAGTCAC  999
      | ||||| |||||||| ||||| |||||||||||||||| ||||||||| 
seq2  T-AAGCATACACCAAC-ATGGT-CCCAACACACTTGGAA-CCACAGTCA-  991

seq1  AAAACGCAGCAAGGATGTGTCACAAATGTCTCTGTGGCTTTAGTCCTCTT  1049
      |||||||||||| || |||| || | |||||||||||| ||||| |||||
seq2  AAAACGCAGCAA-GAAGTGT-AC-ATTGTCTCTGTGGC-TTAGT-CTCTT  1036

seq1  TGCGTCCCAAAGTCCTTGCAGCAATCCGGTGAGTCTCCAAGCACTTCGTG  1099
      ||||||||||   |||||||   ||||| ||||||| ||||| ||   ||
seq2  TGCGTCCCAA--GCCTTGCA--CATCCGTTGAGTCT-CAAGCCCT--CTG  1079

seq1  ACCAACAGAACTCCAAT  1116
      ||||| | |||||||||
seq2  ACCAA-ATAACTCCAAT  1095

seq1: chr8_80027876_80028892
seq2: B6Ng01-024G04.g_67_1068 (reverse)

seq1  CCCCCTCCAGCAACTGTTAAATGACTGTAAATGCTGCCCCAGGAAAGGCT  50
      ||||||||  |||||||| ||||||||| |||||||||||| |||||   
seq2  CCCCCTCCGACAACTGTT-AATGACTGT-AATGCTGCCCCA-GAAAGCTA  47

seq1  TATAAGGCCCTGTCTCCAGCAACCCTTATTAACTATCTTATAAATCCTCA  100
      | |   |||||||||||||| | ||||| || |||||||||  ||| || 
seq2  TCT---GCCCTGTCTCCAGCGA-CCTTA-TATCTATCTTAT--ATCGTC-  89

seq1  GGGAAGGGCGGGGCCTTGGGAGCCCCTCCTCCCTTGAAGGGAAAGTTGGG  150
       ||||||  ||| ||||||||||||||||| |||||| |||| |||||||
seq2  TGGAAGGATGGGACCTTGGGAGCCCCTCCT-CCTTGATGGGATAGTTGGG  138

seq1  GGGACAATCTTGTTCATCCCTCCTCCTTCCTGGTAACCTCAGCTGCTGGC  200
       || |||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TGG-CAATTTTGTTCATCCCTCCTCCTTCCTGGT-ACCTCAGCTGCTGGC  186

seq1  AGTTCTAAAAAGCATGGTGTCACCACCACCACCATTGTGCGGTGCTTCCC  250
      |||||||||| ||||||||||| ||||||||||||||||||||| |||||
seq2  AGTTCTAAAAGGCATGGTGTCA-CACCACCACCATTGTGCGGTGGTTCCC  235

seq1  ACAGCCTAGGCAAGCACTCTACCAACTGAGCCACACTGTACAGTCTGGGG  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAGGCAAGCACTCTACCAACTGAGCCACACTGTACAGTCTGGGG  285

seq1  GGGGGGGGGGAGCAAAACAAAACCTTCTGTAAGTCTTTTTTAGGAGAATA  350
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  GGGGGGGGGGAGCAAAACAAATCCTTCAGTAAGTCTTTTTTAGGAGAATA  335

seq1  CTAACACAGGTCTTAGTAAACTACCCAGCAAAAGCCAGCCGCGTGTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACAGGTCTTAGTAAACTACCCAGCAAAAGCCAGCCGCGTGTTGTC  385

seq1  AGTGGCCCTGTGTGACCCCCTAGATCATTAGTAATAACATTACTTTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCCTGTGTGACCCCCTAGATCATTAGTAATAACATTACTTTTGAA  435

seq1  ACCTTATTCTGTTAAAGGCAAATATCAGCTCCTTCTTTTGTGATGGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTCTGTTAAAGGCAAATATCAGCTCCTTCTTTTGTGATGGACAT  485

seq1  AACGGTGTAGACAGTAATTCAGATCATCTGAGGATGACTGTCTTCCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTGTAGACAGTAATTCAGATCATCTGAGGATGACTGTCTTCCCTGT  535

seq1  GACTCTCAGCAACTGTCTTAGTCACCAGGAGCAGGACAACACTGACAAGA  600
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GACTCTCAGCAACTGTGTTAGTCACCAGGAGCAGGACAACACTGACAAGA  585

seq1  GAAAGCGTTTAACTGGGGGCTGGCTTACCATTTCAGAGGATCCATCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCGTTTAACTGGGGGCTGGCTTACCATTTCAGAGGATCCATCATCA  635

seq1  CGGGGCGAGCATGGCACACTGGCCAGCATGGTCACACAGCAAGAATGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCGAGCATGGCACACTGGCCAGCATGGTCACACAGCAAGAATGGCA  685

seq1  CACTGGCCAGGATGGTCACAGTGCGAGCATGGCACACTGGTCAGCATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCCAGGATGGTCACAGTGCGAGCATGGCACACTGGTCAGCATGGT  735

seq1  CACAGTGCGAGCATGGCACACTGGCCAGCATGGTCACAGTGCGAGCATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCGAGCATGGCACACTGGCCAGCATGGTCACAGTGCGAGCATGG  785

seq1  CACACTGGCCAGCATGGTCACAGTGCGAGCATGGCACACTGGCCAGCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGCCAGCATGGTCACAGTGCGAGCATGGCACACTGGCCAGCATG  835

seq1  GCCTTGGAACAGAGAGTTTTACACTCTGATCTTCAGGCAGCAGAAAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGAACAGAGAGTTTTACACTCTGATCTTCAGGCAGCAGAAAGAAA  885

seq1  CTGGGCTTGGCATGGGCCTTTGACATCGAAAGCCCATCCCCAGTGGCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTGGCATGGGCCTTTGACATCGAAAGCCCATCCCCAGTGGCACA  935

seq1  GTTCCTCCAACAAGGCCATGCCCCCTAGTCCTTTCACACAGCTCTGCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCAACAAGGCCATGCCCCCTAGTCCTTTCACACAGCTCTGCTCT  985

seq1  CCGGTGACAAGGAATTC  1017
      |||||||||||||||||
seq2  CCGGTGACAAGGAATTC  1002