BAC Information

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BAC

Clone NameB6Ng01-025D23
Chromosome8 (Build37)
Map Location 111,871,183 - 112,036,647
singlet/doubletdoublet
Overlap geneLOC100042829, Pmfbp1
Upstream geneAtbf1, 4922502B01Rik, Gm1943
Downstream geneDhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025D23.bB6Ng01-025D23.g
ACCDH856653DH856654
length1,091628
definitionDH856653|Mus musculus domesticus DNA, BAC clone: B6Ng01-025D23, 5' end.DH856654|Mus musculus domesticus DNA, BAC clone: B6Ng01-025D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,871,183 - 111,872,277)(112,036,020 - 112,036,647)
sequence
gaattcctgtggctagttaccacaactttttagaaagcattccttttttt
acaagttaaatatcacaccagtttatgcatttcagagtagcactaactaa
taaagagacagattatatagtcggatgctatttaaaggtcagtagacact
aggttctagaagtctaaagaaatgttatttaccagtagaaattttcattg
tttcactctctagttttctgagtgttggtggaagaaagggagtagccaca
gagtgcagttccgaaaggaggagccaggttacaaaaccgcaggagaaact
ttacaaatacttaaataaatgtgaacatttaaagtgtcgtccaaagttca
cgaacaacagagtgactttaaaataaacctaaagctttaaatggatttgg
gatgtgaactggaaacaaaaccaacctggtgggaactaattgcgtttggg
gctgaaagggactacaatgtcagaagcaaagatgctaacaatcttgaaaa
tggcagctgtggggggctggagagatgggtcagcagccaagagcactggc
tgcccttgccgaagacccaggttccactctctgcacccacatggtagctt
atagccgttccattgggctccagtcattcacacatgggtacacagatata
catgcaagcgctcattcacacatgggtacacatttcttttaaaatggcag
ctggacttacaactttaaaacactagcggggtttagaaattacacctctt
gttagaattatgatcagttctcacagcagttaagctattctgtacaaggc
agattaggtacactgtgagcccccactggaggtctgtggaagttagttaa
cctttcagaggtcaccagcgagggggaggtgtactttctcctgcccagtt
caaaggttggaccagactctgaggtctgagtagcagtggcctccgaatac
cactgtaagctctttgaagaggctccattttattttgcttcttccttggc
agttaatagcaagaaaaaaacatgagttttgttgtgtgccaagcctagga
aactagagtaaaactgaatagttggaagaaataaagcgagt
ctatttctttgtacacagcccattccaattataagaacgtttgtctgttt
gctctttcaaccagaggggaaaggcagagaagatgagacatgctggcgag
tgagtgcccccaggagtgattgccagtagtggtattgggttggagagttc
actgaggaatgtcctagaatatcatccagagatctccagggcttgaaccc
cccatttgcctagagcaagtaacccattccatttgggatttgcccttctt
gatggcaccccctcatgcctcttagaatcacatgactgctcatatgctca
tcttagggtcttgatgttggcagaacccagccttggacagaggtgtggtg
tctctgtgttaatggtgtcaagagaggttggcagaatgtttagaataaat
tttgcagtgctttctcctccaattgaggtctggcagtgaccactgtgcca
aatcctatcctctttcctagcaggtgagcgttcatttgatttagactggg
ggcagcaacatgtcttcttaaaaatgacatttcttggctctctgggaact
agctggggtcatgtggagtgcatgtgcatgtgtgtatgtatatgcgtgca
tgtgtgtgtgtatgtatgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111871183_111872277
seq2: B6Ng01-025D23.b_45_1135

seq1  GAATTCCTGTGGCTAGTTACCACAACTTTTTAGAAAGCATTCCTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGGCTAGTTACCACAACTTTTTAGAAAGCATTCCTTTTTTT  50

seq1  ACAAGTTAAATATCACACCAGTTTATGCATTTCAGAGTAGCACTAACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTAAATATCACACCAGTTTATGCATTTCAGAGTAGCACTAACTAA  100

seq1  TAAAGAGACAGATTATATAGTCGGATGCTATTTAAAGGTCAGTAGACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGACAGATTATATAGTCGGATGCTATTTAAAGGTCAGTAGACACT  150

seq1  AGGTTCTAGAAGTCTAAAGAAATGTTATTTACCAGTAGAAATTTTCATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTAGAAGTCTAAAGAAATGTTATTTACCAGTAGAAATTTTCATTG  200

seq1  TTTCACTCTCTAGTTTTCTGAGTGTTGGTGGAAGAAAGGGAGTAGCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCTCTAGTTTTCTGAGTGTTGGTGGAAGAAAGGGAGTAGCCACA  250

seq1  GAGTGCAGTTCCGAAAGGAGGAGCCAGGTTACAAAACCGCAGGAGAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGTTCCGAAAGGAGGAGCCAGGTTACAAAACCGCAGGAGAAACT  300

seq1  TTACAAATACTTAAATAAATGTGAACATTTAAAGTGTCGTCCAAAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATACTTAAATAAATGTGAACATTTAAAGTGTCGTCCAAAGTTCA  350

seq1  CGAACAACAGAGTGACTTTAAAATAAACCTAAAGCTTTAAATGGATTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAACAGAGTGACTTTAAAATAAACCTAAAGCTTTAAATGGATTTGG  400

seq1  GATGTGAACTGGAAACAAAACCAACCTGGTGGGAACTAATTGCGTTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAACTGGAAACAAAACCAACCTGGTGGGAACTAATTGCGTTTGGG  450

seq1  GCTGAAAGGGACTACAATGTCAGAAGCAAAGATGCTAACAATCTTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGGGACTACAATGTCAGAAGCAAAGATGCTAACAATCTTGAAAA  500

seq1  TGGCAGCTGTGGGGGGCTGGAGAGATGGGTCAGCAGCCAAGAGCACTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTGTGGGGGGCTGGAGAGATGGGTCAGCAGCCAAGAGCACTGGC  550

seq1  TGCCCTTGCCGAAGACCCAGGTTCCACTCTCTGCACCCACATGGTAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGCCGAAGACCCAGGTTCCACTCTCTGCACCCACATGGTAGCTT  600

seq1  ATAGCCGTTCCATTGGGCTCCAGTCATTCACACATGGGTACACAGATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCGTTCCATTGGGCTCCAGTCATTCACACATGGGTACACAGATATA  650

seq1  CATGCAAGCGCTCATTCACACATGGGTACACATTTCTTTTAAAATGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAGCGCTCATTCACACATGGGTACACATTTCTTTTAAAATGGCAG  700

seq1  CTGGACTTACAACTTTAAAACACTAGCGGGGTTTAGAAATTACACCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTACAACTTTAAAACACTAGCGGGGTTTAGAAATTACACCTCTT  750

seq1  GTTAGAATTATGATCAGTTCTCACAGCAGTTAAGCTATTCTGTACAAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAATTATGATCAGTTCTCACAGCAGTTAAGCTATTCTGTACAAGGC  800

seq1  AGATTAGGTACACTGTGAGCCCCCACTGGAGGTCTGTGGAAGTTAGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGGTACACTGTGAGCCCCCACTGGAGGTCTGTGGAAGTTAGTTAA  850

seq1  CCTTTCAGAGGTCACCAGCGAGGGGGAGGTGTAC-TTCTCCTGCCCAGTT  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTTTCAGAGGTCACCAGCGAGGGGGAGGTGTACTTTCTCCTGCCCAGTT  900

seq1  CAAAGGTTGGACCAGACTCTGAGGTCTGAGTAGCAGTGGCCTCCGAATAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTGGACCAGACTCTGAGGTCTGAGTAGCAGTGGCCTCCGAATAC  950

seq1  CACTGTAAGCTCTTTGAAGAGGCTCCATTTTAATTTTGCTTC-TCCTTGG  998
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  CACTGTAAGCTCTTTGAAGAGGCTCCATTTT-ATTTTGCTTCTTCCTTGG  999

seq1  CAGTAAATAGCAAGAAAAAAACCATGGAGTCTG-TGTGTGCCAAGCCTAG  1047
      |||| |||||||||||||||| ||||   | || ||||||||||||||||
seq2  CAGTTAATAGCAAGAAAAAAA-CATGAGTTTTGTTGTGTGCCAAGCCTAG  1048

seq1  GAAACTAGAGTAAAAACTGAAATAGGTTGGAAAGAAATAAAGCAGAGT  1095
      ||||||||||| ||||||| |||| ||||| |||||||||||| ||||
seq2  GAAACTAGAGT-AAAACTG-AATA-GTTGG-AAGAAATAAAGC-GAGT  1091

seq1: chr8_112036020_112036647
seq2: B6Ng01-025D23.g_72_699 (reverse)

seq1  CACACACACACATACATACACACACACATGCACGCATATACATACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATACATACACACACACATGCACGCATATACATACACACA  50

seq1  TGCACATGCACTCCACATGACCCCAGCTAGTTCCCAGAGAGCCAAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGCACTCCACATGACCCCAGCTAGTTCCCAGAGAGCCAAGAAAT  100

seq1  GTCATTTTTAAGAAGACATGTTGCTGCCCCCAGTCTAAATCAAATGAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTTAAGAAGACATGTTGCTGCCCCCAGTCTAAATCAAATGAACG  150

seq1  CTCACCTGCTAGGAAAGAGGATAGGATTTGGCACAGTGGTCACTGCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGCTAGGAAAGAGGATAGGATTTGGCACAGTGGTCACTGCCAGA  200

seq1  CCTCAATTGGAGGAGAAAGCACTGCAAAATTTATTCTAAACATTCTGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTGGAGGAGAAAGCACTGCAAAATTTATTCTAAACATTCTGCCA  250

seq1  ACCTCTCTTGACACCATTAACACAGAGACACCACACCTCTGTCCAAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCTTGACACCATTAACACAGAGACACCACACCTCTGTCCAAGGCT  300

seq1  GGGTTCTGCCAACATCAAGACCCTAAGATGAGCATATGAGCAGTCATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGCCAACATCAAGACCCTAAGATGAGCATATGAGCAGTCATGTG  350

seq1  ATTCTAAGAGGCATGAGGGGGTGCCATCAAGAAGGGCAAATCCCAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGAGGCATGAGGGGGTGCCATCAAGAAGGGCAAATCCCAAATGG  400

seq1  AATGGGTTACTTGCTCTAGGCAAATGGGGGGTTCAAGCCCTGGAGATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTTACTTGCTCTAGGCAAATGGGGGGTTCAAGCCCTGGAGATCTC  450

seq1  TGGATGATATTCTAGGACATTCCTCAGTGAACTCTCCAACCCAATACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATATTCTAGGACATTCCTCAGTGAACTCTCCAACCCAATACCAC  500

seq1  TACTGGCAATCACTCCTGGGGGCACTCACTCGCCAGCATGTCTCATCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCAATCACTCCTGGGGGCACTCACTCGCCAGCATGTCTCATCTTC  550

seq1  TCTGCCTTTCCCCTCTGGTTGAAAGAGCAAACAGACAAACGTTCTTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTTCCCCTCTGGTTGAAAGAGCAAACAGACAAACGTTCTTATAA  600

seq1  TTGGAATGGGCTGTGTACAAAGAAATAG  628
      ||||||||||||||||||||||||||||
seq2  TTGGAATGGGCTGTGTACAAAGAAATAG  628