BAC Information

Click to search

BAC

Clone NameB6Ng01-025G12
Chromosome9 (Build37)8 (Build37)
Map Location 100,440,691 - 100,441,72272,492,539 - 72,492,707
singlet/doubletsingletsinglet
Overlap geneNck1
Upstream geneArmc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb
Downstream geneLOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025G12.bB6Ng01-025G12.g
ACCDH856766DH856767
length1,132970
definitionDH856766|Mus musculus domesticus DNA, BAC clone: B6Ng01-025G12, 5' end.DH856767|Mus musculus domesticus DNA, BAC clone: B6Ng01-025G12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,440,691 - 100,441,722)(72,492,539 - 72,492,707)
sequence
gaattctcaggaggatttatagaagccaacaaatacataaaaaatactca
tcgttcatcactagagaaatgcaaatcaaaaccatgtgattaaaagaaaa
caagtaggcacagatgagggtgagctgagaaattagtgttggcaatgtat
tagttacttttctattgctgtgatccaggtaacttactaagactgttggt
ttgtggttccaaagaggtgagaatacatcatggaaaaaagacatgcagta
aaatgacaggcatggcaacaggaacagaagctaagaactaatcacatatt
caatggcaaacaagaagcagaggcagtaaactggaaatgggtgttgcaaa
agcccacccagtgacattcttcctccagcaaggctgtaccacccctcccc
aaacagcagcacagagtaggattcaagtactaaactatctgagccaatcg
gggactttgtcattaaatcatcacagtaggcatgcacaggactgtacagt
gtggaggttcctggggaaacaagaactatggtatgatccggcatgcctac
ttctaggaatatacttgaaggaactgaaatcagcatgctgaagaaataat
cagcactcacacttatctatctgttttggctagggttttgctgctgtttt
ggtgtgtgtggtctggtctcaaggtgtagtccaggttagcctttgaaaat
tattattacaggacacaattgccctaaaattgtgcccttcttaccttcag
cctccctagcactgggaccacaggtctgttgaccacacttcttcatacct
ttattgcacaataccaacccatataatcatgtccttatgtctatcgatag
agaaatgttaagtatacataatggagtgcccaaggaggtcagatcttcag
aaaaagagggaacagacagttgtgaatgggcttgtctgtgctgggaactg
aacccaggttctctggagagccacagtgctctgaaccataagtatgcagg
gggaataaactatctcgaaatagttgaattaaaataaagctgattggtta
attctttatagaaagccctaccacttccacaatttctgccctcccaaaga
aaagtttccatttccctgtttagtttcgcaat
gaattcaaccaggcatggtggctgaactcataatcccaacttaggaagga
gtagtagaaggatcattctaagaccaaggctagtcttgtctatacaataa
gtatggtggtttgaatgagaatggccccatagggacatatattttaatgc
tgtgctgcaggtggtagaactgtttgggaaggatggggaggggacaatgt
gtgtcactgaggtttgggattcataagccctcactgttccctgttacctt
tctctttctttacctcatgattatgtctttggatttcaactctcaggaac
tgttctagtgccatacttgcctgcctactgccatactccctgtcataata
gtcacagactcatgctctgaaaccgtaagcaagccgccaattaaatgctt
tcttctataaattgtcatggtcatggagttcttcacagcaatagaaaagt
aaaatttgaggccagctgagactacatgttgcgagtcagtttcaaaacaa
aaaacaaaaaatatgtttttttcttaatttatttatttattttatgtttg
tgaatacactgtcgcagtcttcagacacaccagaagaggacatcggatcc
ccattacagatggttgtgagacaccatgtggttgctgggaattgaactca
ggacctctggaagaatagtcaatgctctttaaccactgagccatctcccc
agccctatatttcttaactttaacagtaaataacttttgctgttaaagga
gaaaaattagaagaggaaataataacacactttgatgacagccaccatga
tccaattactaaggacagataagaaaccacaagaaaactaaagactaata
ctccttgaatatgaaagcaaaaactcaaggaaatataaacaaaccaaaaa
acacatgcacattaaaaaattacatgctgggcatggggacaccattacta
caatcccagcactcataagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_100440691_100441722
seq2: B6Ng01-025G12.b_141_1160

seq1  GATGAGGGTGAGCTGAGAAATTAGTGTTGGCAATGTATTAGTTACTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGGTGAGCTGAGAAATTAGTGTTGGCAATGTATTAGTTACTTTTC  50

seq1  TATTGCTGTGATCCAGGTAACTTACTAAGACTGTTGGTTTGTGGTTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGTGATCCAGGTAACTTACTAAGACTGTTGGTTTGTGGTTCCAA  100

seq1  AGAGGTGAGAATACATCATGGAAAAAAGACATGCAGTAAAATGACAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGAGAATACATCATGGAAAAAAGACATGCAGTAAAATGACAGGCA  150

seq1  TGGCAACAGGAACAGAAGCTAAGAACTAATCACATATTCAATGGCAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACAGGAACAGAAGCTAAGAACTAATCACATATTCAATGGCAAACA  200

seq1  AGAAGCAGAGGCAGTAAACTGGAAATGGGTGTTGCAAAAGCCCACCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGAGGCAGTAAACTGGAAATGGGTGTTGCAAAAGCCCACCCAGT  250

seq1  GACATTCTTCCTCCAGCAAGGCTGTACCACCCCTCCCCAAACAGCAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTTCCTCCAGCAAGGCTGTACCACCCCTCCCCAAACAGCAGCAC  300

seq1  AGAGTAGGATTCAAGTACTAAACTATCTGAGCCAATCGGGGACTTTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGATTCAAGTACTAAACTATCTGAGCCAATCGGGGACTTTGTCA  350

seq1  TTAAATCATCACAGTAGGCATGCACAGGACTGTACAGTGTGGAGGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCATCACAGTAGGCATGCACAGGACTGTACAGTGTGGAGGTTCCT  400

seq1  GGGGAAACAAGAACTATGGTATGATCCGGCATGCCTACTTCTAGGAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAACAAGAACTATGGTATGATCCGGCATGCCTACTTCTAGGAATAT  450

seq1  ACTTGAAGGAACTGAAATCAGCATGCTGAAGAAATAATCAGCACTCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGGAACTGAAATCAGCATGCTGAAGAAATAATCAGCACTCACAC  500

seq1  TTATCTATCTGTTTTGGCTAGGGTTTTGCTGCTGTTTTGGTGTGTGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATCTGTTTTGGCTAGGGTTTTGCTGCTGTTTTGGTGTGTGTGGT  550

seq1  CTGGTCTCAAGGTGTAGTCCAGGTTAGCCTT--GAAATTATTA-TACAGG  597
      |||||||||||||||||||||||||||||||   ||||||||| ||||||
seq2  CTGGTCTCAAGGTGTAGTCCAGGTTAGCCTTTGAAAATTATTATTACAGG  600

seq1  ACACAATTGCCCTAAAATTGTGCCCTTCTTACCTTCAGCCTCCCTAGCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTGCCCTAAAATTGTGCCCTTCTTACCTTCAGCCTCCCTAGCAC  650

seq1  TGGGACCACAGGTCTGTTGACCACACTTCTTCATACCTTTATTGCACAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCACAGGTCTGTTGACCACACTTCTTCATACCTTTATTGCACAAT  700

seq1  ACCAACCCATATAATCAATGTCC-TATGTCTATCGATAGAGAAAATGTTA  746
      |||||||||||||||| |||||| ||||||||||||||||| ||||||||
seq2  ACCAACCCATATAATC-ATGTCCTTATGTCTATCGATAGAG-AAATGTTA  748

seq1  AGTATACATAATGGAGTGCCCAAGGAGGTCAGATCTTCAGGAAAAAGAGG  796
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTATACATAATGGAGTGCCCAAGGAGGTCAGATCTTCA-GAAAAAGAGG  797

seq1  G-ACAGACAGTTGTGAATGGCCTTGTCTGTGCTGGGAACTGAACCCAGGT  845
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAACAGACAGTTGTGAATGGGCTTGTCTGTGCTGGGAACTGAACCCAGGT  847

seq1  TCTCTGGAAGAGCAACCAGTGCTCTGAACCATAAAGTAGGCAGGGGGAAT  895
      ||||||| ||||| | |||||||||||||||| ||||| |||||||||||
seq2  TCTCTGG-AGAGCCA-CAGTGCTCTGAACCAT-AAGTATGCAGGGGGAAT  894

seq1  AAAACTATTCAGATATTAGTTGATATAAAAATAAAAAGCAAGATTGGTAA  945
       |||||||   || | ||||||| || |||||  |||||  ||||||| |
seq2  -AAACTATCTCGA-AATAGTTGA-ATTAAAAT--AAAGC-TGATTGGTTA  938

seq1  GACATAGAAAGAAAGCCCATAGCAGCTTCCACAATTTCTGCCTCTCCCAA  995
          |  | ||||||||| || || ||||||||||||||||| |||||||
seq2  ATTCTTTATAGAAAGCCC-TACCA-CTTCCACAATTTCTGCC-CTCCCAA  985

seq1  GGAAATGTTTCCAATCCCCTGTTTATGTTTCTGCAAT  1032
       |||| ||||||| | ||||||||| ||||| |||||
seq2  AGAAAAGTTTCCATTTCCCTGTTTA-GTTTC-GCAAT  1020

seq1: chr8_72492539_72492707
seq2: B6Ng01-025G12.g_602_772 (reverse)

seq1  GGGCTGGAGATATGGCTCAGTGGTT-AAGGGCACTGACTGCCCTTCTAGA  49
      ||||||| || |||||||||||||| ||| ||| |||||   |||| |||
seq2  GGGCTGGGGAGATGGCTCAGTGGTTAAAGAGCATTGACTATTCTTCCAGA  50

seq1  GGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGT  99
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGTCCTGAGTTCAATTCCCAGCAACCACATGGTGTCTCACAACCATCTGT  100

seq1  AAT-GGGATGCAATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACAGTAT  148
      ||| ||||| | ||| ||||||||||||||||||||||| || ||||| |
seq2  AATGGGGATCCGATGTCCTCTTCTGGTGTGTCTGAAGACTGCGACAGTGT  150

seq1  ACTCACATACATAAAATAAAT  169
      | ||||| |||||||||||||
seq2  ATTCACAAACATAAAATAAAT  171