BAC Information

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BAC

Clone NameB6Ng01-025H04
Chromosome8 (Build37)
Map Location 99,838,970 - 99,840,123
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC333331
Downstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025H04.bB6Ng01-025H04.g
ACCDH856798DH856799
length1,1531,139
definitionDH856798|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H04, 5' end.DH856799|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacgggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagcgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcctctccttagaagtgggaa
caaaacacctatggaaggagttacagagacaaagtttggagctgagatgg
accatgtagagactgccatatccagggatccaccccataatcagcatcca
aacgctgacaccattgcatacactagcaagattttatcgaaaggacccag
atgtagctgtctcttgtgagactatgccagggcctagcaaacacagaagt
ggatgctcacagtcagctaatggatggatcacagggctcccaatggagga
gctagagaaattacccaaggagctaaagggatctgcaccctatagtggac
acattatgaactaccagtaccccggagctctgactctagctgcatatgta
tcaaagatggctagtcgcatcactgcaagagagccattggacacgccaac
tttatatgcccagtaagggaacgccaggccaaaaaggaggtgtgttagga
gct
gaattctcatctctttcttgtgcccaatgagaaaatggctctctgaccac
aactaccccatggccgtctagaaaatgccccccacagaatccgtccaggg
cacacatggagttcctgtcctggatttttattctttgtctttcccaattt
ctgcaaatagctactttagaaactttgtccattcataagctgggttgtgg
ttggaatacatgtagtctgtccataactctttctttgacagaactagaaa
tccattttagttatttttacttcccattaaattttgttagacctattcca
catgcctacagcaattgctttcctttacctggtctttctttgtttacaaa
gtcagaaagaacttgattatttgaccaaaatagataaattttcttataag
ctttggtgacagcaggctttgtatatttgtatatcacaaaaggataaagc
atctttagatttggtaatgggaaacttcggtattgctaaatgatttgtca
gggttcacaggatgtatttagtgagaaaaagacaggtctaagatgaaaac
catgaagcttcaaatctcactttcagagccttaatcctctgggctgtatt
tggggctggggaataataggaaatagcatggagtgaggtcgttagagaat
ggcagtgccaccaatgaatttaatttaaatgcatctcatttcacaccctg
catctttctcctgagatggctgaaagaatatgttacatcttttaactctc
tcaccaccgaaagagaaagagaaagaggcttagtgacaatttcccagcct
acctgatacccagcagccgatttctaaggacatgctgctgtcgtgggatc
catggccagacatgtctacccatatattggggagtacagtcatatattat
atcagtagtgcactgattaaaagttgcagtatctatggggattcatatca
ttatcctttgaattttttgcaagtgttacttagttataggtatcgatatc
aaatataatcattccaggatgttatcttaagagtcttttcttcatcgaga
agcatgatttacataatatttaactatcatgcttttctattcttcagcct
ggagactcccattgtacattctggagtgtaaatgttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_99838970_99840123
seq2: B6Ng01-025H04.g_64_1202

seq1  GAATTCTCATCTCTTTCTTGTGCCCAATGAGAAAATGGCTCTCTGACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCTCTTTCTTGTGCCCAATGAGAAAATGGCTCTCTGACCAC  50

seq1  AACTACCCCATGGCCGTCTAGAAAATGCCCCCCACAGAATCCGTCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCCCATGGCCGTCTAGAAAATGCCCCCCACAGAATCCGTCCAGGG  100

seq1  CACACATGGAGTTCCTGTCCTGGATTTTTATTCTTTGTCTTTCCCAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGGAGTTCCTGTCCTGGATTTTTATTCTTTGTCTTTCCCAATTT  150

seq1  CTGCAAATAGCTACTTTAGAAACTTTGTCCATTCATAAGCTGGGTTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATAGCTACTTTAGAAACTTTGTCCATTCATAAGCTGGGTTGTGG  200

seq1  TTGGAATACATGTAGTCTGTCCATAACTCTTTCTTTGACAGAACTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATACATGTAGTCTGTCCATAACTCTTTCTTTGACAGAACTAGAAA  250

seq1  TCCATTTTAGTTATTTTTACTTCCCATTAAATTTTGTTAGACCTATTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTAGTTATTTTTACTTCCCATTAAATTTTGTTAGACCTATTCCA  300

seq1  CATGCCTACAGCAATTGCTTTCCTTTACCTGGTCTTTCTTTGTTTACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTACAGCAATTGCTTTCCTTTACCTGGTCTTTCTTTGTTTACAAA  350

seq1  GTCAGAAAGAACTTGATTATTTGACCAAAATAGATAAATTTTCTTATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAAGAACTTGATTATTTGACCAAAATAGATAAATTTTCTTATAAG  400

seq1  CTTTGGTGACAGCAGGCTTTGTATATTTGTATATCACAAAAGGATAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGACAGCAGGCTTTGTATATTTGTATATCACAAAAGGATAAAGC  450

seq1  ATCTTTAGATTTGGTAATGGGAAACTTCGGTATTGCTAAATGATTTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAGATTTGGTAATGGGAAACTTCGGTATTGCTAAATGATTTGTCA  500

seq1  GGGTTCACAGGATGTATTTAGTGAGAAAAAGACAGGTCTAAGATGAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCACAGGATGTATTTAGTGAGAAAAAGACAGGTCTAAGATGAAAAC  550

seq1  CATGAAGCTTCAAATCTCACTTTCAGAGCCTTAATCCTCTGGGCTGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGCTTCAAATCTCACTTTCAGAGCCTTAATCCTCTGGGCTGTATT  600

seq1  TGGGGCTGGGGAATAATAGGAAATAGCATGGAGTGAGGTCGTTAGAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGGGGAATAATAGGAAATAGCATGGAGTGAGGTCGTTAGAGAAT  650

seq1  GGCAGTGCCACCAATGAATTTAATTTAAATGCATCTCATTTCACACCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGCCACCAATGAATTTAATTTAAATGCATCTCATTTCACACCCTG  700

seq1  CATCTTTCTCCTGAGATGGCTGAAAGAATATGTTACATCTTTTAACTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTCCTGAGATGGCTGAAAGAATATGTTACATCTTTTAACTCTC  750

seq1  TCACCACCGAAAGAGAAAGAGAAAGAGGCTTAGTGACAATTTCCCAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACCGAAAGAGAAAGAGAAAGAGGCTTAGTGACAATTTCCCAGCCT  800

seq1  ACCTGATACCCAGCAGCCGATTTCTAAGGACATGCTGCTGTCGTGGGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATACCCAGCAGCCGATTTCTAAGGACATGCTGCTGTCGTGGGATC  850

seq1  CATGGCCAGACATGTCTACCCATATATTGGGGAGTACAGTCATATATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCAGACATGTCTACCCATATATTGGGGAGTACAGTCATATATTAT  900

seq1  ATCAGTAGGTGCACTGATTAAAAAGTTGCAGGTAATCTATGGGGAATTCA  950
      ||||||| ||||||||||| |||||||||||   |||||||||| |||||
seq2  ATCAGTA-GTGCACTGATT-AAAAGTTGCAG--TATCTATGGGG-ATTCA  945

seq1  TATCATTATCCTTTGAATTTTTTTGCAAAGTGTTACTTAGTTATAGGTAT  1000
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  TATCATTATCCTTTGAA-TTTTTTGC-AAGTGTTACTTAGTTATAGGTAT  993

seq1  CGATAATCAAATATAAATCATTCCAGGATGGTTATCTTAAGAGTCTTTTC  1050
      |||| ||||||||| |||||||||||||| ||||||||||||||||||||
seq2  CGAT-ATCAAATAT-AATCATTCCAGGAT-GTTATCTTAAGAGTCTTTTC  1040

seq1  TTCCATCGAGAAGCATTGATTTACATAATATTTTAACTATCATGCTTTTC  1100
      || |||||||||||| |||||||||||||| |||||||||||||||||||
seq2  TT-CATCGAGAAGCA-TGATTTACATAATA-TTTAACTATCATGCTTTTC  1087

seq1  TATCTTTCAG-CTGGAGAACTCCCAATGGTACCATTCTGGATGTGT-AAT  1148
      |||  ||||| |||||| |||||| || ||| ||||||||| |||| |||
seq2  TATTCTTCAGCCTGGAG-ACTCCC-ATTGTA-CATTCTGGA-GTGTAAAT  1133

seq1  GTTAAA  1154
      ||||||
seq2  GTTAAA  1139