BAC Information

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BAC

Clone NameB6Ng01-026E04
Chromosome8 (Build37)
Map Location 64,277,805 - 64,429,127
singlet/doubletdoublet
Overlap genePalld, BC013672
Upstream gene2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4, LOC100040872
Downstream geneAnxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026E04.bB6Ng01-026E04.g
ACCDH857355DH857356
length1,0591,060
definitionDH857355|Mus musculus domesticus DNA, BAC clone: B6Ng01-026E04, 5' end.DH857356|Mus musculus domesticus DNA, BAC clone: B6Ng01-026E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,277,805 - 64,278,859)(64,428,057 - 64,429,127)
sequence
gaattccacaacttcattacattcgtctttacataattatttctttattt
ctttaccttttctctcctttgtcaaatcctgccccacccccacctcccgt
tttttgtttttgttggtttttttttttaaataaataactgagtcacactg
ttttgggtaggaaggtggcagccataggtagactgcccatgcctcagagg
attctaacacatgtgtacatatcagaaacactcattggacttagagagtt
ttgtttttttttttttaaagcacatgaagttgggaggaagatagaagata
tattggagagaaacagatccagagagagaatgtgaggggtggacatgacc
atgcacagacacacacaggtataaatttttcaaaaattaataatttaaaa
agaaaaaaatccatttttcttttaacatccacttcttctaatttgtgtta
agagtgttcctcatcatgactgacgactgtcatgttagctgtgaaggtct
ttgatgacacctgcaaacaagcgaggttaatgtacaaagctctgaaatcc
ccaaggtgtctttctttcccctatcaacctgcaataagctgatgaaatgt
cttcccaataggacagtgctcagtgctccctaacagtaataatccctacg
attcataccttcatgtttagtggttacagccttaagagtttttctcctac
ttttccattataatcacaagtctatgtagacttcccaaaatgatgatgta
agcgggatctttggtacccactttgcagcattgcttccaaaggaaagtac
tatctgcttccaaaacactgacggaaaaccattacacagtagttttccca
gccgaggactccttgtgttcaccctttgtggctatgactgccatttcctt
tgtgttgcttatctgtagaagatcatttttcctgtctgatctctgtcttc
tgacttctcctcattcagttctgcccagattcagtatgaagatagcttgc
tggtagtttgatcgttctgtatgatctagatctgaccagtattgattatc
atcagaacc
gaattctgtagcctcacattctttacttctgtgtcaggaaccaggctgca
cttaaacatgcttgagaaaaaggcgaaaggaagcttctagctttgcagca
gttggcgcgtggcatgattcagtatttcaggaacaccatggttaagctaa
taagccacgtgataaaggaaaggtttcataggaccatggtggttgggcta
catgataagtactctcttctatccatgtatcatattctaaggcaattcta
tgagctaccagcatgaggtcagcaggctatcaatgtatctaaaaggtgta
tctgcagaatgacaacagggtaagtagtagacgtatttagtatctgggtc
aacagcatcatcctattgtcaagcaagacaacttcatgggagatctatag
gatgatagagagggtctaatggttagaagttccaaagagaaaagtttgac
ttactatcgtgattttggggtgatttaaaacaggatgtctcatcctgtag
aaaggtttcgttaaaaattatatttaaggagatactacaaagcaaaatat
taaaaacatgtccttgcccatttctgaaatcaagaaagttaacaggattc
ttcagctgagattgcgcagtactcagatttcatatatgtagcatgctatg
ctgtgtgtttacctatgtgcccacgagcacatagatgcagagatggatgt
ttgcttagtcatagctaaatctcaactggtcaccagattcttgacgcttt
ttgcaataaagacacctaagaacagtattacctccccagttagtaggcta
tcaaggcaccacaatgggagagtatattttaaagtcagtgagagctttca
caagataaatctgaattcaacctactttattatctaataccttgagtggg
aggactgtactctcaaagctaaagtcagttctcgaaacgtggactagaaa
tacatccctatcttgcaagctttcctgaacatttcatgcactatgcaagg
aaaaaacccaagcatgtagtagtagtttctcctttgctgcttgtgggtga
cttaagctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_64277805_64278859
seq2: B6Ng01-026E04.b_44_1102

seq1  GAATTCCACAACTTCATTACATTCGTCTTTACATAATTATTTCTTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAACTTCATTACATTCGTCTTTACATAATTATTTCTTTATTT  50

seq1  CTTTACCTTTTCTCTCCTTTGTCAAATCCTGCCCCACCCCCACCTCCCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTTTTCTCTCCTTTGTCAAATCCTGCCCCACCCCCACCTCCCGT  100

seq1  TTTTTGTTTTTGTTGGTTTTTTTTTTTAAATAAATAACTGAGTCACACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTGTTGGTTTTTTTTTTTAAATAAATAACTGAGTCACACTG  150

seq1  TTTTGGGTAGGAAGGTGGCAGCCATAGGTAGACTGCCCATGCCTCAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTAGGAAGGTGGCAGCCATAGGTAGACTGCCCATGCCTCAGAGG  200

seq1  ATTCTAACACATGTGTACATATCAGAAACACTCATTGGACTTAGAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAACACATGTGTACATATCAGAAACACTCATTGGACTTAGAGAGTT  250

seq1  TTGTTTTTTTTTTTTTAAAGCACATGAAGTTGGGAGGAAGATAGAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTTTTTTTAAAGCACATGAAGTTGGGAGGAAGATAGAAGATA  300

seq1  TATTGGAGAGAAACAGATCCAGAGAGAGAATGTGAGGGGTGGACATGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAGAGAAACAGATCCAGAGAGAGAATGTGAGGGGTGGACATGACC  350

seq1  ATGCACAGACACACACAGGTATAAATTTTTCAAAAATTAATAATTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGACACACACAGGTATAAATTTTTCAAAAATTAATAATTTAAAA  400

seq1  AGAAAAAAATCCATTTTTCTTTTAACATCCACTTCTTCTAATTTGTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAATCCATTTTTCTTTTAACATCCACTTCTTCTAATTTGTGTTA  450

seq1  AGAGTGTTCCTCATCATGACTGACGACTGTCATGTTAGCTGTGAAGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTCCTCATCATGACTGACGACTGTCATGTTAGCTGTGAAGGTCT  500

seq1  TTGATGACACCTGCAAACAAGCGAGGTTAATGTACAAAGCTCTGAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGACACCTGCAAACAAGCGAGGTTAATGTACAAAGCTCTGAAATCC  550

seq1  CCAAGGTGTCTTTCTTTCCCCTATCAACCTGCAATAAGCTGATGAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTGTCTTTCTTTCCCCTATCAACCTGCAATAAGCTGATGAAATGT  600

seq1  CTTCCCAATAGGACAGTGCTCAGTGCTCCCTAACAGTAATAATCCCTACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAATAGGACAGTGCTCAGTGCTCCCTAACAGTAATAATCCCTACG  650

seq1  ATTCATACCTTCATGTTTAGTGGTTACAGCCTTAAGAGTTTTTCTCCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATACCTTCATGTTTAGTGGTTACAGCCTTAAGAGTTTTTCTCCTAC  700

seq1  TTTTCCATTATAATCACAAGTCTATGTAGACTTCCCAAAATGATGATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTATAATCACAAGTCTATGTAGACTTCCCAAAATGATGATGTA  750

seq1  AGCGGGATCTTTGGTACCCACTTTGCAGCATTGCTTCCAAAGGAAAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGATCTTTGGTACCCACTTTGCAGCATTGCTTCCAAAGGAAAGTAC  800

seq1  TATCTGCTTCCAAAACACTGACGGAAAACCATTACACAGTAGTTTTCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTTCCAAAACACTGACGGAAAACCATTACACAGTAGTTTTCCCA  850

seq1  GCCGAGGACTCCTTGTGTTCACCCTTTGTGGCTATGACTGCCATTTCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGGACTCCTTGTGTTCACCCTTTGTGGCTATGACTGCCATTTCCTT  900

seq1  TGTGTTGCTTATCTGTAGAAGATCATTTTTCCTGTCTGATCTTCCTGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  TGTGTTGCTTATCTGTAGAAGATCATTTTTCCTGTCTGATCT--CTGTCT  948

seq1  TCTGACTTCTTCCTCATTCAGTTTCTGGCCCAAGGATTCAAGTATTGAAA  1000
      ||||||||| ||||||||||| |||| |||||  ||||| |||||   ||
seq2  TCTGACTTC-TCCTCATTCAG-TTCT-GCCCA--GATTC-AGTAT--GAA  990

seq1  GATAGCTTGCTGGGTAAGTTTGATCGTTTCTGTTATTGATCTAGAT----  1046
      |||||||||||||   |||||||||| ||||||   ||||||||||    
seq2  GATAGCTTGCTGG--TAGTTTGATCG-TTCTGT--ATGATCTAGATCTGA  1035

seq1  ---------------TTCAGAACC  1055
                      ||||||||
seq2  CCAGTATTGATTATCATCAGAACC  1059

seq1: chr8_64428057_64429127
seq2: B6Ng01-026E04.g_67_1126 (reverse)

seq1  TTAGCTTAAGTCACCCACAAGCAGGCAAAGGAGAAACTACCTACTACATG  50
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  TTAGCTTAAGTCACCCACAAGCA-GCAAAGGAGAAACTA-CTACTACATG  48

seq1  CTTTGGGTTTTTTCTGTGCATAGTGCATGAAATGTTCAGGAAAGCTTTGC  100
      | ||||||||||||  ||||||||||||||||||||||||||||| ||||
seq2  C-TTGGGTTTTTTCCTTGCATAGTGCATGAAATGTTCAGGAAAGC-TTGC  96

seq1  AAGATAGGGATTGTTATTTCTAGTCCACGTTTTCGAGAACTGACTTTAGG  150
      |||||||||||   ||||||||||||||| ||||||||||||||||||| 
seq2  AAGATAGGGAT--GTATTTCTAGTCCACG-TTTCGAGAACTGACTTTAG-  142

seq1  CTTTTGAGAGTAACAGTCCTCCAACTCAAGGTATTAGATAATAAAGTAGG  200
        ||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  -CTTTGAGAGT-ACAGTCCTCCCACTCAAGGTATTAGATAATAAAGTAGG  190

seq1  TTGAATTCAGATTTATCTTGTGGAAAGCTCTCACTGACTTTAAAATATAC  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGAATTCAGATTTATCTTGT-GAAAGCTCTCACTGACTTTAAAATATAC  239

seq1  TCTCCCATTGTGGTGCCTTGATAGCCTACTAACTGGGGAGGTAATACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATTGTGGTGCCTTGATAGCCTACTAACTGGGGAGGTAATACTGT  289

seq1  TCTTAGGTGTCTTTATTGCAAAAAGCGTCAAGAATCTGGTGACCAGTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGTGTCTTTATTGCAAAAAGCGTCAAGAATCTGGTGACCAGTTGA  339

seq1  GATTTAGCTATGACTAAGCAAACATCCATCTCTGCATCTATGTGCTCGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGCTATGACTAAGCAAACATCCATCTCTGCATCTATGTGCTCGTG  389

seq1  GGCACATAGGTAAACACACAGCATAGCATGCTACATATATGAAATCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATAGGTAAACACACAGCATAGCATGCTACATATATGAAATCTGAG  439

seq1  TACTGCGCAATCTCAGCTGAAGAATCCTGTTAACTTTCTTGATTTCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCGCAATCTCAGCTGAAGAATCCTGTTAACTTTCTTGATTTCAGAA  489

seq1  ATGGGCAAGGACATGTTTTTAATATTTTGCTTTGTAGTATCTCCTTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAAGGACATGTTTTTAATATTTTGCTTTGTAGTATCTCCTTAAAT  539

seq1  ATAATTTTTAACGAAACCTTTCTACAGGATGAGACATCCTGTTTTAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTAACGAAACCTTTCTACAGGATGAGACATCCTGTTTTAAATC  589

seq1  ACCCCAAAATCACGATAGTAAGTCAAACTTTTCTCTTTGGAACTTCTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAAATCACGATAGTAAGTCAAACTTTTCTCTTTGGAACTTCTAAC  639

seq1  CATTAGACCCTCTCTATCATCCTATAGATCTCCCATGAAGTTGTCTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGACCCTCTCTATCATCCTATAGATCTCCCATGAAGTTGTCTTGCT  689

seq1  TGACAATAGGATGATGCTGTTGACCCAGATACTAAATACGTCTACTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAGGATGATGCTGTTGACCCAGATACTAAATACGTCTACTACTT  739

seq1  ACCCTGTTGTCATTCTGCAGATACACCTTTTAGATACATTGATAGCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTGTCATTCTGCAGATACACCTTTTAGATACATTGATAGCCTGC  789

seq1  TGACCTCATGCTGGTAGCTCATAGAATTGCCTTAGAATATGATACATGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCATGCTGGTAGCTCATAGAATTGCCTTAGAATATGATACATGGA  839

seq1  TAGAAGAGAGTACTTATCATGTAGCCCAACCACCATGGTCCTATGAAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGAGTACTTATCATGTAGCCCAACCACCATGGTCCTATGAAACC  889

seq1  TTTCCTTTATCACGTGGCTTATTAGCTTAACCATGGTGTTCCTGAAATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTATCACGTGGCTTATTAGCTTAACCATGGTGTTCCTGAAATAC  939

seq1  TGAATCATGCCACGCGCCAACTGCTGCAAAGCTAGAAGCTTCCTTTCGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATGCCACGCGCCAACTGCTGCAAAGCTAGAAGCTTCCTTTCGCC  989

seq1  TTTTTCTCAAGCATGTTTAAGTGCAGCCTGGTTCCTGACACAGAAGTAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCAAGCATGTTTAAGTGCAGCCTGGTTCCTGACACAGAAGTAAA  1039

seq1  GAATGTGAGGCTACAGAATTC  1071
      |||||||||||||||||||||
seq2  GAATGTGAGGCTACAGAATTC  1060